Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001166A_C01 KCC001166A_c01
(599 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564688.1| CHP-rich zinc finger protein, putative [Arabido... 32 6.8
dbj|BAB64296.1| aspartic proteinase 2 [Glycine max] 32 8.9
sp|Q56806|PEL_XANCM Pectate lyase precursor (PL) (PSTRU-3) gi|11... 32 8.9
>ref|NP_564688.1| CHP-rich zinc finger protein, putative [Arabidopsis thaliana]
gi|25405831|pir||E96596 hypothetical protein T5A14.16
[imported] - Arabidopsis thaliana
gi|4204272|gb|AAD10653.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 725
Score = 32.0 bits (71), Expect = 6.8
Identities = 13/32 (40%), Positives = 20/32 (61%)
Frame = +3
Query: 348 WINEAWPHEHHVFINDGHGGCTFGCYTDSCFS 443
++++ PH+H +F N G C GC +DSC S
Sbjct: 507 FVHDCHPHDHPLFFNLTKGNC-MGCGSDSCSS 537
>dbj|BAB64296.1| aspartic proteinase 2 [Glycine max]
Length = 508
Score = 31.6 bits (70), Expect = 8.9
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +1
Query: 19 VFLGVVSWQCCYLLRDRLGLLGHGNPFRAQLNYLASASTLLYVENWNLVNQ*MSSVWDLL 198
V GV C ++ LL P A++N+ A +L VE +V+Q +WDLL
Sbjct: 276 VSTGVCEGGCAAIVDSGTSLLAGPTPVVAEINHAIGAEGVLSVECKEVVSQYGELIWDLL 335
>sp|Q56806|PEL_XANCM Pectate lyase precursor (PL) (PSTRU-3) gi|1197029|gb|AAC41522.1|
pectate lyase
Length = 377
Score = 31.6 bits (70), Expect = 8.9
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Frame = +3
Query: 264 YQSTTCDIGSSQWWKNTVFT-GWVTRFMNWINEAWPHEHHVFINDGHGGCTFGCYTDSCF 440
Y T + ++ W + FT G T N P +HH D G F + S F
Sbjct: 165 YDGLTVEGATNVWVDHVTFTDGRRTDDQNGTANGRPKQHHDGAMDVKKGANFVTISYSAF 224
Query: 441 SLPHPLDLVILENMAGKSESVDVERLVRHILHESISGKL------QTAIYSN 578
DL+ + A ++S ++ + + L E+IS + Q +Y+N
Sbjct: 225 KSHEKNDLIGSSDSASSTDSGKLKVTIHNTLFENISARAPRVRFGQVHLYNN 276
Database: nr
Posted date: Oct 14, 2003 12:26 AM
Number of letters in database: 498,525,298
Number of sequences in database: 1,537,769
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 635,580,902
Number of Sequences: 1537769
Number of extensions: 14716425
Number of successful extensions: 36821
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 35642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36809
length of database: 498,525,298
effective HSP length: 118
effective length of database: 317,068,556
effective search space used: 25682553036
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
