KCC001165A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001165A_C01 KCC001165A_c01
gcaccagGTACAGTCAAAATGCAGATGCTCGCGTCCTCCTCTCGCTCTGCCATCCGGGCT
TCGCGCCCCACCGGCTCCAGCCGGTCGTCGGTGGTGGTCCGCGCGACCGCTGAGGCGCCC
GTCGTCGAGAAGAAGGAGCGCAAGCTGGGCCCTCTGGAGCGCGGTGGCACTCTGTCCGGC
GACGCTGCTGCCGGCAAGGATGCTGGCGACAAGGCCCGCGCCATGGCGACTGGCGTCACT
GCGAAGCCTGTGACGATCCTCCAGATTGTCGACGGCCGCTTCCGCGACGACCGCTGGATC
GATGGCCGCTGGGACCTGAGCCAGTTCAAGAGCGCCAAGACTGGCGAGGTTGATTGGGAC
CTGGTGATTGACGCCGAGGTGGCCCGCCGCAAGCTACTGGAGGACAACCCCATCCCGTCC
ATCAACGAGGAGCCCGTCAACTTCGACACCAGCGAGATCCCCTGGTGGGCCTGGGTCAAG
CGCTTCCACCTGCCTGAGGCTGAGAAGCTGAACGGCCGCGCTGCTATGATGGGCTACGTG
CTGGCCCTGTTCGTGGACTCGCTGTCGGGCGCTGGCCTGATCTGACAGAGGGGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001165A_C01 KCC001165A_c01
         (594 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_567532.1| Lil3 protein [Arabidopsis thaliana] gi|25455770...   151  8e-36
pir||G71445 hypothetical protein - Arabidopsis thaliana gi|22451...   151  8e-36
gb|AAM63936.1| Lil3 protein [Arabidopsis thaliana]                    150  1e-35
ref|NP_199522.2| Lil3 protein [Arabidopsis thaliana]                  139  4e-32
dbj|BAA98106.1| Lil3 protein [Arabidopsis thaliana]                   139  4e-32

>ref|NP_567532.1| Lil3 protein [Arabidopsis thaliana] gi|25455770|pir||T52310 Lil3
           protein [imported] - Arabidopsis thaliana
           gi|4741966|gb|AAD28780.1|AF134133_1 Lil3 protein
           [Arabidopsis thaliana]
           gi|14030673|gb|AAK53011.1|AF375427_1 AT4g17600/dl4835w
           [Arabidopsis thaliana] gi|18491101|gb|AAL69517.1|
           AT4g17600/dl4835w [Arabidopsis thaliana]
           gi|22530970|gb|AAM96989.1| Lil3 protein [Arabidopsis
           thaliana] gi|23198388|gb|AAN15721.1| Lil3 protein
           [Arabidopsis thaliana] gi|23306350|gb|AAN17402.1| Lil3
           protein [Arabidopsis thaliana]
           gi|25084208|gb|AAN72196.1| Lil3 protein [Arabidopsis
           thaliana]
          Length = 262

 Score =  151 bits (381), Expect = 8e-36
 Identities = 90/194 (46%), Positives = 113/194 (57%), Gaps = 5/194 (2%)
 Frame = +1

Query: 28  LASSSR----SAIRASRPTGSSRSSVVVRATAEAPV-VEKKERKLGPLERGGTLSGDAAA 192
           L SS+R    S  RAS  +GS+  +  V   A  PV V  KE    P         + A 
Sbjct: 26  LLSSNRFSLLSVTRASSDSGSTSPTAAVSVEAPEPVEVIVKEP---PQSTPAVKKEETAT 82

Query: 193 GKDAGDKARAMATGVTAKPVTILQIVDGRFRDDRWIDGRWDLSQFKSAKTGEVDWDLVID 372
            K+   +   M T  +            +F+D RWI+G WDL QF+  K G+ DWD VI 
Sbjct: 83  AKNVAVEGEEMKTTESVV----------KFQDARWINGTWDLKQFE--KDGKTDWDSVIV 130

Query: 373 AEVARRKLLEDNPIPSINEEPVNFDTSEIPWWAWVKRFHLPEAEKLNGRAAMMGYVLALF 552
           AE  RRK LE+NP  + N+EPV FDTS IPWWAW+KR+HLPEAE LNGRAAM+G+ +A F
Sbjct: 131 AEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELLNGRAAMIGFFMAYF 190

Query: 553 VDSLSGAGLI*QRG 594
           VDSL+G GL+ Q G
Sbjct: 191 VDSLTGVGLVDQMG 204

>pir||G71445 hypothetical protein - Arabidopsis thaliana
           gi|2245118|emb|CAB10540.1| hypothetical protein
           [Arabidopsis thaliana] gi|7268512|emb|CAB78763.1|
           hypothetical protein [Arabidopsis thaliana]
          Length = 350

 Score =  151 bits (381), Expect = 8e-36
 Identities = 90/194 (46%), Positives = 113/194 (57%), Gaps = 5/194 (2%)
 Frame = +1

Query: 28  LASSSR----SAIRASRPTGSSRSSVVVRATAEAPV-VEKKERKLGPLERGGTLSGDAAA 192
           L SS+R    S  RAS  +GS+  +  V   A  PV V  KE    P         + A 
Sbjct: 26  LLSSNRFSLLSVTRASSDSGSTSPTAAVSVEAPEPVEVIVKEP---PQSTPAVKKEETAT 82

Query: 193 GKDAGDKARAMATGVTAKPVTILQIVDGRFRDDRWIDGRWDLSQFKSAKTGEVDWDLVID 372
            K+   +   M T  +            +F+D RWI+G WDL QF+  K G+ DWD VI 
Sbjct: 83  AKNVAVEGEEMKTTESVV----------KFQDARWINGTWDLKQFE--KDGKTDWDSVIV 130

Query: 373 AEVARRKLLEDNPIPSINEEPVNFDTSEIPWWAWVKRFHLPEAEKLNGRAAMMGYVLALF 552
           AE  RRK LE+NP  + N+EPV FDTS IPWWAW+KR+HLPEAE LNGRAAM+G+ +A F
Sbjct: 131 AEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELLNGRAAMIGFFMAYF 190

Query: 553 VDSLSGAGLI*QRG 594
           VDSL+G GL+ Q G
Sbjct: 191 VDSLTGVGLVDQMG 204

>gb|AAM63936.1| Lil3 protein [Arabidopsis thaliana]
          Length = 262

 Score =  150 bits (380), Expect = 1e-35
 Identities = 90/194 (46%), Positives = 113/194 (57%), Gaps = 5/194 (2%)
 Frame = +1

Query: 28  LASSSR----SAIRASRPTGSSRSSVVVRATAEAPV-VEKKERKLGPLERGGTLSGDAAA 192
           L SS+R    S  RAS  +GS+  +  V   A  PV V  KE    P         + A 
Sbjct: 26  LLSSNRFSLLSVTRASSDSGSTSPTAAVSVEAPEPVEVIVKEP---PQSTPAVKKEETAT 82

Query: 193 GKDAGDKARAMATGVTAKPVTILQIVDGRFRDDRWIDGRWDLSQFKSAKTGEVDWDLVID 372
            K+   +   M T  +            +F+D RWI+G WDL QF+  K G+ DWD VI 
Sbjct: 83  AKNVAVEGEEMKTTESVI----------KFQDARWINGTWDLKQFE--KDGKTDWDSVIV 130

Query: 373 AEVARRKLLEDNPIPSINEEPVNFDTSEIPWWAWVKRFHLPEAEKLNGRAAMMGYVLALF 552
           AE  RRK LE+NP  + N+EPV FDTS IPWWAW+KR+HLPEAE LNGRAAM+G+ +A F
Sbjct: 131 AEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELLNGRAAMIGFFMAYF 190

Query: 553 VDSLSGAGLI*QRG 594
           VDSL+G GL+ Q G
Sbjct: 191 VDSLTGVGLVDQMG 204

>ref|NP_199522.2| Lil3 protein [Arabidopsis thaliana]
          Length = 258

 Score =  139 bits (349), Expect = 4e-32
 Identities = 81/183 (44%), Positives = 110/183 (59%)
 Frame = +1

Query: 46  SAIRASRPTGSSRSSVVVRATAEAPVVEKKERKLGPLERGGTLSGDAAAGKDAGDKARAM 225
           S  RAS   G++  S VV     A V  ++     P E   + S + A G +A D +   
Sbjct: 39  SVPRASSDNGTT--SPVVEIPKPASVAVEEVPVKSPAE-SSSASENGAVGGEATDSSTE- 94

Query: 226 ATGVTAKPVTILQIVDGRFRDDRWIDGRWDLSQFKSAKTGEVDWDLVIDAEVARRKLLED 405
                    T++     ++++ +W++G WDL QF+  K G+ DWD VI +E  RRK LED
Sbjct: 95  ---------TVI-----KYQNAKWVNGTWDLKQFE--KDGKTDWDSVIVSEAKRRKWLED 138

Query: 406 NPIPSINEEPVNFDTSEIPWWAWVKRFHLPEAEKLNGRAAMMGYVLALFVDSLSGAGLI* 585
           NP  + N+E V FDTS IPWWAW+KR+HLPEAE LNGRAAM+G+ +A FVDSL+G GL+ 
Sbjct: 139 NPETTSNDELVVFDTSIIPWWAWMKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVD 198

Query: 586 QRG 594
           Q G
Sbjct: 199 QMG 201

>dbj|BAA98106.1| Lil3 protein [Arabidopsis thaliana]
          Length = 254

 Score =  139 bits (349), Expect = 4e-32
 Identities = 81/183 (44%), Positives = 110/183 (59%)
 Frame = +1

Query: 46  SAIRASRPTGSSRSSVVVRATAEAPVVEKKERKLGPLERGGTLSGDAAAGKDAGDKARAM 225
           S  RAS   G++  S VV     A V  ++     P E   + S + A G +A D +   
Sbjct: 35  SVPRASSDNGTT--SPVVEIPKPASVAVEEVPVKSPAE-SSSASENGAVGGEATDSSTE- 90

Query: 226 ATGVTAKPVTILQIVDGRFRDDRWIDGRWDLSQFKSAKTGEVDWDLVIDAEVARRKLLED 405
                    T++     ++++ +W++G WDL QF+  K G+ DWD VI +E  RRK LED
Sbjct: 91  ---------TVI-----KYQNAKWVNGTWDLKQFE--KDGKTDWDSVIVSEAKRRKWLED 134

Query: 406 NPIPSINEEPVNFDTSEIPWWAWVKRFHLPEAEKLNGRAAMMGYVLALFVDSLSGAGLI* 585
           NP  + N+E V FDTS IPWWAW+KR+HLPEAE LNGRAAM+G+ +A FVDSL+G GL+ 
Sbjct: 135 NPETTSNDELVVFDTSIIPWWAWMKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVD 194

Query: 586 QRG 594
           Q G
Sbjct: 195 QMG 197



EST assemble image


clone accession position
1 CM023a10_r AV387779 1 594
2 MX224b11_r BP090457 3 407
3 HC091e08_r AV638841 8 419
4 MX204d09_r BP089287 11 488
5 MX002c04_r BP086118 22 413




Chlamydomonas reinhardtii
Kazusa DNA Research Institute