Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001162A_C01 KCC001162A_c01
(551 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_812036.1| putative sialic acid-specific acetylesterase [B... 32 4.4
ref|NP_189802.1| hypothetical protein [Arabidopsis thaliana] gi|... 31 9.7
ref|ZP_00024077.1| COG3741: N-formylglutamate amidohydrolase [Ra... 31 9.7
>ref|NP_812036.1| putative sialic acid-specific acetylesterase [Bacteroides
thetaiotaomicron VPI-5482] gi|29340438|gb|AAO78230.1|
putative sialic acid-specific acetylesterase
[Bacteroides thetaiotaomicron VPI-5482]
Length = 479
Score = 32.3 bits (72), Expect = 4.4
Identities = 23/66 (34%), Positives = 34/66 (50%), Gaps = 4/66 (6%)
Frame = -3
Query: 246 PPIFGVLEKRTAE*YLPSYSTSDGLYGLWTESLK----AGSHKVFKSWYPCIADMLAHTN 79
PP++ +E + + Y+ Y+ GL +WT SLK AG KVF YP A++ T
Sbjct: 381 PPVYKSMEIQENKIYINFYNAQRGLSPMWT-SLKGFEIAGEDKVF---YPAFAEIETTTA 436
Query: 78 IIVVKS 61
+ V S
Sbjct: 437 RLAVSS 442
>ref|NP_189802.1| hypothetical protein [Arabidopsis thaliana] gi|11290625|pir||T46110
hypothetical protein T27B3.30 - Arabidopsis thaliana
gi|6735289|emb|CAB68117.1| putative protein [Arabidopsis
thaliana]
Length = 153
Score = 31.2 bits (69), Expect = 9.7
Identities = 20/49 (40%), Positives = 27/49 (54%), Gaps = 2/49 (4%)
Frame = -1
Query: 317 GSAMREG--LRTPIDKCKLDPCTTLYHQFLASLRNEPRNSTFHRTPRVM 177
G+ M+E R P + KLD T LY AS + +PR+ FH PRV+
Sbjct: 54 GATMKEYNCQRLPRHEEKLDNHTLLYRGPKASRQAKPRHKFFHTNPRVV 102
>ref|ZP_00024077.1| COG3741: N-formylglutamate amidohydrolase [Ralstonia metallidurans]
Length = 312
Score = 31.2 bits (69), Expect = 9.7
Identities = 28/91 (30%), Positives = 42/91 (45%), Gaps = 9/91 (9%)
Frame = +2
Query: 137 LPAFKDSVHKPYNPSLVE--YDGRYYSAVRFSR-TPK---IGGKEWYMDRVYICRSEFLN 298
+PAF ++H+ P LV + G + A R TP+ + +W+MDRVY C E
Sbjct: 48 IPAF--TLHRGTRPLLVSMPHVGTHLPAKLAERLTPEARTVPDTDWHMDRVYECARELGA 105
Query: 299 LHALRCHSYYPFE---EPYNECEYPPEIRDG 382
+ HS Y + P N+ YP + G
Sbjct: 106 SILMATHSRYVIDLNRPPDNQNLYPGQDTTG 136
Database: nr
Posted date: Oct 14, 2003 12:26 AM
Number of letters in database: 498,525,298
Number of sequences in database: 1,537,769
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 558,498,935
Number of Sequences: 1537769
Number of extensions: 12300029
Number of successful extensions: 31243
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31237
length of database: 498,525,298
effective HSP length: 116
effective length of database: 320,144,094
effective search space used: 21449654298
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
