KCC001156A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001156A_C01 KCC001156A_c01
CTTGCATTAAGAGTTTTCACAATCAGAGCTCACTGCGCTGCACAACCTGAGCATACTCTG
ATTCCTTGGAGGCGCCAAGACCAATCTCGTCGCTGCACCTTTCCGAGGTCACCAAGAGTT
TATTACACCGTAAAAATGGTCTATGGAGCAGTGTCTGGCAATCAGACGCGGAGATATCCG
CATGTCAAGGAGCACTATCAAACGACGAAGGAACACTTCCATGATTCGCCCAACGCCAAA
GAGCCAAACAAGACCTCAACCTTTGGGCTGCTGTACAACAACAGCACCCACTTCATGGAC
CGGCGGCTTGACCCGAAGCCAGTCTCGCGAAGCTCCATGGTAGGCGGCGGCGCCACGACC
CTAAAATTTGGCCAGGGCGAGAGTAAGCCGATCACGTGGTCGGGACGCCTGCCGGAGTCC
TCATACCGCGGCAACGGCACGTTCGAGCTGGCCAACGGTCTCACGTACAGCTACCGCAGC
CACAAGCCGGTGAAGCTGGTGCCGTACGCATCCCTCACAAAGTCGGAGTATCAGGCCAAC
TACAACCGCACCGCGCAGGCCTCGGAGCATCCGCGCTGGGTGACCATGCGCGCCCCGTAC
AGCGTAGACTACAAGACAACTGGCCGCTTCAATGGCACCGGTGGATACTAGCTGAGATCG
GCCGGGGCAGGGTCAGTTTCAGGACTTTGTTTGGCCGCTAGGTGAGGTGACGTGAAGGCA
CCAGACGGCAGCAGGGTGTAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001156A_C01 KCC001156A_c01
         (741 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophil...    44  0.003
pir||S50125 larval glue protein Lgp3 precursor - fruit fly (Dros...    42  0.010
ref|NP_477153.1| toucan CG9660-PA [Drosophila melanogaster] gi|2...    40  0.038
pir||T13806 toucan gene protein - fruit fly (Drosophila melanoga...    40  0.038
ref|NP_612676.1| pp150 tegument protein UL32 [Chimpanzee cytomeg...    40  0.050

>ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophila melanogaster]
           gi|28380257|gb|AAF50957.3| CG3047-PA [Drosophila
           melanogaster]
          Length = 1225

 Score = 43.9 bits (102), Expect = 0.003
 Identities = 44/152 (28%), Positives = 63/152 (40%), Gaps = 9/152 (5%)
 Frame = +2

Query: 185 SRSTIKRRRNTSMIRPTPKSQTRPQPLGCCTTTAPTSWTGGLTRSQSREAPW*AAAPRP* 364
           SR T    R+T+    +  + T P+     TT  PT+ T   T + S  AP     PR  
Sbjct: 233 SRPTTTTPRSTTTTTTSRPTTTTPRSTTTTTTRRPTTTTPRCTTTTSTCAPT-TTTPR-- 289

Query: 365 NLARARVSRSRGRDACRSPHTAATARSSWPTVSR---TATAATSR*SW----CRTHPSQS 523
               +  + +  R    +P    T  +  PT +    T T +TSR +     C T PS +
Sbjct: 290 ----STTTTTTSRPTTTTPRCTTTTSTCSPTRTTPRSTTTTSTSRPTTTTPRCTTTPSTT 345

Query: 524 RSIRPTTTAPRRPRSIRAG*P--CAPRTA*TT 613
            + RPTTT PR   +     P    PR+  TT
Sbjct: 346 CTRRPTTTTPRSTTTTCTSGPTTTTPRSTTTT 377

 Score = 38.9 bits (89), Expect = 0.085
 Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 6/144 (4%)
 Frame = +2

Query: 185  SRSTIKRRRNTSMIRPTPKSQTRPQPLGCCTTTAPTSWTGGLTRSQSREAPW*AAAPRP* 364
            SR T    R+T+    +  + T P+     +T APT+ T   T + +   P     PR  
Sbjct: 988  SRPTTTTPRSTTTTSTSRPTTTTPRSTTKTSTCAPTTTTPRSTTTTTTSRPT-TTTPR-- 1044

Query: 365  NLARARVSRSRGRDACRSPHTAATARSSWPTVS---RTATAATSR*SWCRTHPSQSRSIR 535
                +  + +  R    +P +  T  +S PT +    T T  TSR +   T P  + +  
Sbjct: 1045 ----STTTTTTSRPTTTTPRSTTTPCTSRPTTTTPRSTTTTTTSRPT--TTTPRSTTTPC 1098

Query: 536  PTTT---APRRPRSIRAG*PCAPR 598
            PTTT   +P R  + R   PC P+
Sbjct: 1099 PTTTPSASPTRTTTTRRPCPCHPQ 1122

 Score = 37.7 bits (86), Expect = 0.19
 Identities = 40/145 (27%), Positives = 57/145 (38%), Gaps = 4/145 (2%)
 Frame = +2

Query: 191  STIKRRRNTSMIRPTPKSQTRPQPLGCCTTTAPTSWTGGLTRSQSREAPW*AAAPRP*NL 370
            +T +    TS  RPT    T P+     TT+ PT+ T   T + S   P     PR    
Sbjct: 945  TTPRSTTTTSTSRPTT---TTPRSTTTTTTSRPTTTTPRSTTTPSTSRPT-TTTPR---- 996

Query: 371  ARARVSRSRGRDACRSPHTAATARSSWPTVSR---TATAATSR*SWCRTHPSQSRSI-RP 538
              +  + S  R    +P +     +  PT +    T T  TSR +      + + +  RP
Sbjct: 997  --STTTTSTSRPTTTTPRSTTKTSTCAPTTTTPRSTTTTTTSRPTTTTPRSTTTTTTSRP 1054

Query: 539  TTTAPRRPRSIRAG*PCAPRTA*TT 613
            TTT PR   +     PC  R   TT
Sbjct: 1055 TTTTPRSTTT-----PCTSRPTTTT 1074

 Score = 37.7 bits (86), Expect = 0.19
 Identities = 39/144 (27%), Positives = 55/144 (38%), Gaps = 4/144 (2%)
 Frame = +2

Query: 233  TPKSQTRPQPLGCCTTTAP----TSWTGGLTRSQSREAPW*AAAPRP*NLARARVSRSRG 400
            TP+S T      C TTT P    T+ T G T +  R     +         R+  + S  
Sbjct: 898  TPRSTTTTCT-SCPTTTTPRSTTTTCTSGPTTTTPRSTTKTSTCAPTTTTPRSTTTTSTS 956

Query: 401  RDACRSPHTAATARSSWPTVSRTATAATSR*SWCRTHPSQSRSIRPTTTAPRRPRSIRAG 580
            R    +P +  T  +S PT +   +  T         PS SR   PTTT PR   +    
Sbjct: 957  RPTTTTPRSTTTTTTSRPTTTTPRSTTT---------PSTSR---PTTTTPRSTTTTSTS 1004

Query: 581  *PCAPRTA*TTRQLAASMAPVDTS 652
             P       TT+   ++ AP  T+
Sbjct: 1005 RPTTTTPRSTTK--TSTCAPTTTT 1026

>pir||S50125 larval glue protein Lgp3 precursor - fruit fly (Drosophila virilis)
           gi|450902|emb|CAA82671.1| glue protein [Drosophila
           virilis] gi|1091591|prf||2021274A glue protein
          Length = 379

 Score = 42.0 bits (97), Expect = 0.010
 Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 1/146 (0%)
 Frame = +2

Query: 179 RMSRSTIKRRRNTSMIRPTPKSQTRPQPLGCCTTTAPTSWTGGLTRSQSREAPW*AAAPR 358
           R S  TI   + T   +PT   +T+P      TTT  T  T     +  R  P      +
Sbjct: 57  RCSTKTINPTKPTKPTKPTTTRRTKP------TTTRRTKPT-----TTRRTKPTTTRRTK 105

Query: 359 P*NLARARVSRSRGRDACRSPHTAATARSSWPTVSRTATAATSR*SWCRTHPSQSRSIRP 538
           P    R + + +R     R+  T  T R + PT +R     T+R    RT P+ +R  +P
Sbjct: 106 PTTTRRTKPTTTR-----RTKPT--TTRRTKPTTTRRTKPTTTR----RTKPTTTRRTKP 154

Query: 539 TTTAPRRPRSIRAG*P-CAPRTA*TT 613
           TTT   +P + R   P   P+T  TT
Sbjct: 155 TTTRKTKPTTTRKTKPTTTPKTIPTT 180

>ref|NP_477153.1| toucan CG9660-PA [Drosophila melanogaster]
           gi|22945364|gb|AAF51145.2| CG9660-PA [Drosophila
           melanogaster]
          Length = 2162

 Score = 40.0 bits (92), Expect = 0.038
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
 Frame = +2

Query: 371 ARARVSRSRGRDACRSPHTAATARSSWPTVSRTATAATSR*SWCRTHPSQSRSIRPTTTA 550
           A  R+ R  G      P T   A SS  T +RT T  TS           ++ IRP T+A
Sbjct: 6   ATTRIPRLDGVSRLPKPSTFGLASSSGSTTNRTTTTTTST----------TQHIRPPTSA 55

Query: 551 PRRPRSIRA-G*PCAPRTA*TTRQLAASMAPVDTS*DRPGQGQ 676
           P+  +  RA G P  PR A +    +A++  + +S  +   G+
Sbjct: 56  PKATQIFRAPGDPAKPRPASSYAPSSAALRDLGSSLKKSASGE 98

>pir||T13806 toucan gene protein - fruit fly (Drosophila melanogaster)
           gi|2760522|emb|CAA74574.1| Toucan protein [Drosophila
           melanogaster]
          Length = 2176

 Score = 40.0 bits (92), Expect = 0.038
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
 Frame = +2

Query: 371 ARARVSRSRGRDACRSPHTAATARSSWPTVSRTATAATSR*SWCRTHPSQSRSIRPTTTA 550
           A  R+ R  G      P T   A SS  T +RT T  TS           ++ IRP T+A
Sbjct: 6   ATTRIPRLDGVSRLPKPSTFGLASSSGSTTNRTTTTTTST----------TQHIRPPTSA 55

Query: 551 PRRPRSIRA-G*PCAPRTA*TTRQLAASMAPVDTS*DRPGQGQ 676
           P+  +  RA G P  PR A +    +A++  + +S  +   G+
Sbjct: 56  PKATQIFRAPGDPAKPRPASSYAPSSAALRDLGSSLKKSASGE 98

>ref|NP_612676.1| pp150 tegument protein UL32 [Chimpanzee cytomegalovirus]
            gi|19881063|gb|AAM00683.1|AF480884_35 pp150 tegument
            protein UL32 [chimpanzee cytomegalovirus]
          Length = 1014

 Score = 39.7 bits (91), Expect = 0.050
 Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
 Frame = +2

Query: 212  NTSMIRPTPKSQTRPQPLGCCTTTAPTSWTGGLTRSQSREAPW*AAAPRP*NLARARVSR 391
            ++S + P P  +++ QP+G   +TAPT     LT +   + P   A PRP   A  +   
Sbjct: 767  SSSPVSPAPPVKSQAQPMGSRISTAPTMPASFLTPANVPKTPSPLAVPRPATTA-VKTPA 825

Query: 392  SRGRDACRSPHTAATARSSWPTVSRTATAATSR*SWCRTHPSQSRSIRPT-------TTA 550
            S      RSP   A+  SS PT + ++  ++      R  P    S++PT        TA
Sbjct: 826  SATSSPLRSP---ASMLSSAPTSAPSSATSSPVKLTIRPQP----SLKPTHAGKAAVGTA 878

Query: 551  PRRPRSIRAG*PCAPRTA*TT 613
            P+   S R      P TA TT
Sbjct: 879  PKMTASKRV----LPATATTT 895



EST assemble image


clone accession position
1 LC091d10_r AV625357 1 469
2 HC034c07_r AV634504 1 479
3 HC054e01_r AV636045 17 521
4 MX048d02_r BP087973 18 254
5 MX067c08_r BP088721 18 358
6 MX011a08_r BP086541 18 396
7 LC083e07_r AV624846 23 540
8 HC095h03_r AV639170 23 513
9 CM022c11_r AV387884 204 765




Chlamydomonas reinhardtii
Kazusa DNA Research Institute