Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001155A_C01 KCC001155A_c01
(612 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566122.1| expressed protein [Arabidopsis thaliana] gi|306... 167 1e-40
pir||A84923 hypothetical protein At2g48070 [imported] - Arabidop... 167 1e-40
ref|NP_064121.1| pr5 [Rat cytomegalovirus] gi|9800242|gb|AAF9911... 50 3e-05
ref|XP_220207.2| similar to splicing coactivator subunit SRm300;... 38 6e-04
ref|ZP_00089959.1| COG0129: Dihydroxyacid dehydratase/phosphoglu... 45 0.001
>ref|NP_566122.1| expressed protein [Arabidopsis thaliana]
gi|30690887|ref|NP_850484.1| expressed protein
[Arabidopsis thaliana] gi|15027853|gb|AAK76457.1|
unknown protein [Arabidopsis thaliana]
gi|19310717|gb|AAL85089.1| unknown protein [Arabidopsis
thaliana] gi|20197563|gb|AAD13710.2| expressed protein
[Arabidopsis thaliana]
Length = 197
Score = 167 bits (423), Expect = 1e-40
Identities = 77/152 (50%), Positives = 107/152 (69%)
Frame = +2
Query: 155 GNEQQTTTAEQPSTSSTPSVEKDILRSTRQIAGTFAPRSSTKSKNPATKGTVLYDVFEWQ 334
G E + E P SS+ ++ KD+ + + A TFAPR+ST SKNPA GT LY VFE Q
Sbjct: 37 GLEPKDDPPESPLPSSSSALGKDLKKVVNKTAATFAPRASTASKNPALPGTTLYKVFEVQ 96
Query: 335 SWICLVAGGLLSFNIIWPTDEPSIPRLLGMWSIWMFTIPSLRAKECMANEKDALNLLFVL 514
+ + GG+LSFN+++P+ EP + RL+GMWSIWMFTIPSLRA++C + EK+ALN LF++
Sbjct: 97 GYASMFLGGVLSFNLLFPSSEPDLWRLMGMWSIWMFTIPSLRARDCPSKEKEALNYLFLI 156
Query: 515 VPLMNVTLPFLWKSFPFIFVSHVLALGGVYWW 610
VPL+NV +PF WKSF ++ + +A +Y W
Sbjct: 157 VPLLNVAIPFFWKSFALVWSADTVAFFAMYAW 188
>pir||A84923 hypothetical protein At2g48070 [imported] - Arabidopsis thaliana
Length = 205
Score = 167 bits (423), Expect = 1e-40
Identities = 77/152 (50%), Positives = 107/152 (69%)
Frame = +2
Query: 155 GNEQQTTTAEQPSTSSTPSVEKDILRSTRQIAGTFAPRSSTKSKNPATKGTVLYDVFEWQ 334
G E + E P SS+ ++ KD+ + + A TFAPR+ST SKNPA GT LY VFE Q
Sbjct: 37 GLEPKDDPPESPLPSSSSALGKDLKKVVNKTAATFAPRASTASKNPALPGTTLYKVFEVQ 96
Query: 335 SWICLVAGGLLSFNIIWPTDEPSIPRLLGMWSIWMFTIPSLRAKECMANEKDALNLLFVL 514
+ + GG+LSFN+++P+ EP + RL+GMWSIWMFTIPSLRA++C + EK+ALN LF++
Sbjct: 97 GYASMFLGGVLSFNLLFPSSEPDLWRLMGMWSIWMFTIPSLRARDCPSKEKEALNYLFLI 156
Query: 515 VPLMNVTLPFLWKSFPFIFVSHVLALGGVYWW 610
VPL+NV +PF WKSF ++ + +A +Y W
Sbjct: 157 VPLLNVAIPFFWKSFALVWSADTVAFFAMYAW 188
>ref|NP_064121.1| pr5 [Rat cytomegalovirus] gi|9800242|gb|AAF99116.1|AF232689_7 pr5
[rat cytomegalovirus Maastricht]
Length = 629
Score = 50.1 bits (118), Expect = 3e-05
Identities = 62/181 (34%), Positives = 74/181 (40%), Gaps = 11/181 (6%)
Frame = -2
Query: 611 PTSTH-RPAPARGTRR*KGSSSTGTAVSRSSAAPARTAG*ARPSRWPCTPWRAGRGW*TS 435
PTST R A GT R ++S GTA S + +PAR G SR P + A RG
Sbjct: 447 PTSTATRTRTAGGTGRATAATSDGTAASSRTTSPARPCGSPATSRAPASGGSA-RG---- 501
Query: 434 RWTTCPA--GAGCWARRWAR*C*MRAGRPPLGKSTTATRRRRTGPS-PWSR-GSLTWWTS 267
TT PA A C RR + C A RP G S T R R S PW R GS T
Sbjct: 502 -PTTWPASTAASCTTRRSSSTC-RGAARPRDGSSPTPARSGRCPWSPPWPRPGSAAASTG 559
Query: 266 ----GARRCRQSGACCAGYPSPRWEWK-RSTAALQWLSAAHFRCAQAPSGAEEPGAG-PK 105
G+ S + G S W R T ++ RC P + G G P+
Sbjct: 560 RGIRGSSPSSSSRSSATGTDSSSGTWTGRPTGTASRSASRPARCTSTPRASASSGGGTPR 619
Query: 104 A 102
A
Sbjct: 620 A 620
Score = 38.9 bits (89), Expect = 0.059
Identities = 47/162 (29%), Positives = 64/162 (39%), Gaps = 10/162 (6%)
Frame = +3
Query: 147 CAAEMSSRQPLQSSRRPLPLPAWRRISCAARARLPAPSRPARPPSQRTPR---------- 296
C A +SR P+ + P PA R + ++ A P R A PP+ T
Sbjct: 390 CPAPGASR-PIPTDAAPPRRPAGPRGASSSTA--PGTGRSASPPACWTATASCWTSPSSG 446
Query: 297 PRGRSCTTSSSGSRGFA*WRAACSHSTSSGPPTSPASRACWACGPSGCSPSPPCAPRSAW 476
P + T ++G G A AA S T++ T+ +R C G S +P +
Sbjct: 447 PTSTATRTRTAGGTGRA--TAATSDGTAASSRTTSPARPC---GSPATSRAPASGGSARG 501
Query: 477 PTRRTRSTCCSCWCR**T*HCRSCGRASLSSSCPTCWRWAVC 602
PT ST SC R + CR R SS PT R C
Sbjct: 502 PTTWPASTAASCTTRRSSSTCRGAARPRDGSS-PTPARSGRC 542
>ref|XP_220207.2| similar to splicing coactivator subunit SRm300; RNA binding protein;
AT-rich element binding factor [Rattus norvegicus]
Length = 1971
Score = 37.7 bits (86), Expect(2) = 6e-04
Identities = 31/109 (28%), Positives = 47/109 (42%), Gaps = 6/109 (5%)
Frame = +3
Query: 189 RRPLPLPAWRRISCAARARLPAPSRPARPPSQRTPRPRGRSCTTSSSGSRGFA*WRAACS 368
R P P P + R + P P++ R R S ++SSS S + ++ S
Sbjct: 1790 RVPSPTPVPKEAVREGRPQEPTPAKRKR---------RSSSSSSSSSSSSSSSSSSSSSS 1840
Query: 369 HSTSSGPPTSPASRACWACGPSGCSPSPPCAPRSAWP------TRRTRS 497
S+SS +S +S + + PS P P P+ A P RR+RS
Sbjct: 1841 SSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRS 1889
Score = 35.4 bits (80), Expect = 0.65
Identities = 30/93 (32%), Positives = 41/93 (43%)
Frame = +3
Query: 174 PLQSSRRPLPLPAWRRISCAARARLPAPSRPARPPSQRTPRPRGRSCTTSSSGSRGFA*W 353
P + SR PL RR +R+R P +R R ++ P R RS + SSS A
Sbjct: 1249 PRKRSRSRSPLAIRRR----SRSRTPRAARGKRSLTRSPPAIRRRSASGSSSDRSRSATP 1304
Query: 354 RAACSHSTSSGPPTSPASRACWACGPSGCSPSP 452
A +HS S PP + +S SP+P
Sbjct: 1305 PATRNHSGSRTPPVALSSSRMSCFSRPSMSPTP 1337
Score = 26.9 bits (58), Expect(2) = 6e-04
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 89 QRPASLSVQRPALPHRSVLVRSGNEQQTTTAEQPSTSSTPS 211
Q+P++L+V +PA RS S + ++++ S+SS+ S
Sbjct: 1728 QQPSALAVLQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSS 1768
>ref|ZP_00089959.1| COG0129: Dihydroxyacid dehydratase/phosphogluconate dehydratase
[Azotobacter vinelandii]
Length = 731
Score = 44.7 bits (104), Expect = 0.001
Identities = 39/126 (30%), Positives = 58/126 (45%), Gaps = 12/126 (9%)
Frame = +3
Query: 159 MSSRQPLQSSRRPLPLPAWRRISCAARARLPAPSR--PARPPSQRTPRPRGRSCTTSSSG 332
+ SRQ S + P+ P W + ++P+ + P P+ PR R+ S+G
Sbjct: 4 LKSRQSQSSMKWPVGQPTWPP-TIVGTCKIPSCNWRWPPWEPTSSMLEPRPRAMAAESTG 62
Query: 333 -SRGFA*WRA--ACSH-------STSSGPPTSPASRACWACGPSGCSPSPPCAPRSAWPT 482
S A WRA A +H ST PPTSPA A + S +P PP PR+ P
Sbjct: 63 TSCRVAPWRAWAAFTHEQPKYSASTPRLPPTSPARCALPSIALSSTAPYPPEIPRTVMPD 122
Query: 483 RRTRST 500
R++++
Sbjct: 123 YRSKTS 128
