KCC001154A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001154A_C01 KCC001154A_c01
CTCCCATATACAGATTTACAAGCTCACTCTCTGGATAGCCCAGGTGGTTAGTGCGACCAC
AACACAGACACGCCCTCTCTGAAAGTTTGTAGCCGACGTAGGGTTGTGCGTACTGAACAG
ACATGTCTACTATCGGCAAGCCCATTGAGTGCAAGGCGGCCATCGCCTGGGAGGCCAAGA
AGCCGCTGGAGGTGCGCACGGTCACCGTGGCGCCGCCCGGCCCCGGCGAAGTGCGCGTGC
AGATCAAGGCGACCGCGTTGTGCCACACGGATGCCTATACTCTGGACGGGCTGGACCCCG
AGGGCCTGTTCCCCTGCATCCTGGGGCACGAGGCCGCGGGCGTTGTGGAGAGCGTCGGCG
AGGGCGTCACCTCCGTGAAGCCGGGTGACCACGTCATCCCCTGCTACCAGGCTTACTGCG
GCGAGTGCAAGTTCTGCAAGCACCCGGAGTCCAACCTGTGCGTGTCGGTGCGCGCTTTCA
CAGGCAAGGGCGTGATGAAGTCAGACGGCAAGCCTCGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001154A_C01 KCC001154A_c01
         (519 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P80572|ADHX_PEA Alcohol dehydrogenase class III (Glutathione-...   199  1e-50
sp|P93436|ADHX_ORYSA Alcohol dehydrogenase class III (Glutathion...   193  1e-48
pir||S71244 alcohol dehydrogenase (EC 1.1.1.1) class III - Arabi...   187  5e-47
gb|AAB06322.1| glutathione-dependent formaldehyde dehydrogenase       187  5e-47
ref|NP_199207.1| alcohol dehydrogenase class III (glutathione-de...   187  5e-47

>sp|P80572|ADHX_PEA Alcohol dehydrogenase class III (Glutathione-dependent formaldehyde
           dehydrogenase) (FDH) (FALDH) (GSH-FDH)
          Length = 378

 Score =  199 bits (507), Expect = 1e-50
 Identities = 95/131 (72%), Positives = 104/131 (78%)
 Frame = +3

Query: 126 STIGKPIECKAAIAWEAKKPLEVRTVTVAPPGPGEVRVQIKATALCHTDAYTLDGLDPEG 305
           +T G+ I CKAA+AWE  KPL +  V VAPP   EVR+QI  TALCHTDAYTL G DPEG
Sbjct: 1   ATQGQVITCKAAVAWEPNKPLTIEDVEVAPPQANEVRIQILFTALCHTDAYTLGGKDPEG 60

Query: 306 LFPCILGHEAAGVVESVGEGVTSVKPGDHVIPCYQAYCGECKFCKHPESNLCVSVRAFTG 485
           LFPCILGHEAAG+VESVGEGVT VKPGDHVIP YQA CGECKFCK P++NLC  VRA TG
Sbjct: 61  LFPCILGHEAAGIVESVGEGVTDVKPGDHVIPSYQAECGECKFCKSPKTNLCGKVRAATG 120

Query: 486 KGVMKSDGKPR 518
            GVM +D K R
Sbjct: 121 VGVMMADRKSR 131

>sp|P93436|ADHX_ORYSA Alcohol dehydrogenase class III (Glutathione-dependent formaldehyde
           dehydrogenase) (FDH) (FALDH) (GSH-FDH)
           gi|7430933|pir||T04164 formaldehyde dehydrogenase
           (glutathione) (EC 1.2.1.1) - rice
           gi|1675394|gb|AAB19117.1| class III ADH enzyme [Oryza
           sativa]
          Length = 381

 Score =  193 bits (490), Expect = 1e-48
 Identities = 92/131 (70%), Positives = 102/131 (77%)
 Frame = +3

Query: 126 STIGKPIECKAAIAWEAKKPLEVRTVTVAPPGPGEVRVQIKATALCHTDAYTLDGLDPEG 305
           ST G+ I CKAA+AWEA KP+ +  V VAPP  GEVRV+I  TA CHTD YT  G DPEG
Sbjct: 4   STQGQVITCKAAVAWEANKPMTIEDVQVAPPQAGEVRVKILFTAFCHTDHYTWSGKDPEG 63

Query: 306 LFPCILGHEAAGVVESVGEGVTSVKPGDHVIPCYQAYCGECKFCKHPESNLCVSVRAFTG 485
           LFPCILGHEAAG+VESVGEGVT V+PGDHVIPCYQA C ECKFCK  ++NLC  VRA TG
Sbjct: 64  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATG 123

Query: 486 KGVMKSDGKPR 518
            GVM +D K R
Sbjct: 124 VGVMMNDRKSR 134

>pir||S71244 alcohol dehydrogenase (EC 1.1.1.1) class III - Arabidopsis thaliana
           gi|1143388|emb|CAA57973.1| class III ADH,
           glutathione-dependent formaldehyde dehydrogenase.
           [Arabidopsis thaliana]
          Length = 379

 Score =  187 bits (476), Expect = 5e-47
 Identities = 89/132 (67%), Positives = 103/132 (77%)
 Frame = +3

Query: 123 MSTIGKPIECKAAIAWEAKKPLEVRTVTVAPPGPGEVRVQIKATALCHTDAYTLDGLDPE 302
           M+T G+ I CKAA+A+E  KPL +  V VAPP  GEVR++I  TALCHTDAYT  G DPE
Sbjct: 1   MATQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPE 60

Query: 303 GLFPCILGHEAAGVVESVGEGVTSVKPGDHVIPCYQAYCGECKFCKHPESNLCVSVRAFT 482
           GLFPCILGHEAAG+VESVGEGVT V+ GDHVIPCYQA C ECKFCK  ++NLC  VR+ T
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSAT 120

Query: 483 GKGVMKSDGKPR 518
           G G+M +D K R
Sbjct: 121 GVGIMMNDRKSR 132

>gb|AAB06322.1| glutathione-dependent formaldehyde dehydrogenase
          Length = 379

 Score =  187 bits (476), Expect = 5e-47
 Identities = 89/132 (67%), Positives = 103/132 (77%)
 Frame = +3

Query: 123 MSTIGKPIECKAAIAWEAKKPLEVRTVTVAPPGPGEVRVQIKATALCHTDAYTLDGLDPE 302
           M+T G+ I CKAA+A+E  KPL +  V VAPP  GEVR++I  TALCHTDAYT  G DPE
Sbjct: 1   MATQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPE 60

Query: 303 GLFPCILGHEAAGVVESVGEGVTSVKPGDHVIPCYQAYCGECKFCKHPESNLCVSVRAFT 482
           GLFPCILGHEAAG+VESVGEGVT V+ GDHVIPCYQA C ECKFCK  ++NLC  VR+ T
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTGVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSAT 120

Query: 483 GKGVMKSDGKPR 518
           G G+M +D K R
Sbjct: 121 GVGIMMNDRKSR 132

>ref|NP_199207.1| alcohol dehydrogenase class III (glutathione-dependent formaldehyde
           dehydrogenase) (GSH-FDH) (ADHIII) [Arabidopsis thaliana]
           gi|20141281|sp|Q96533|ADHX_ARATH Alcohol dehydrogenase
           class III (Glutathione-dependent formaldehyde
           dehydrogenase) (FDH) (FALDH) (GSH-FDH)
           gi|9758553|dbj|BAB09054.1| alcohol dehydrogenase (EC
           1.1.1.1) class III [Arabidopsis thaliana]
           gi|14517532|gb|AAK62656.1| AT5g43940/MRH10_4
           [Arabidopsis thaliana] gi|21592856|gb|AAM64806.1|
           alcohol dehydrogenase (EC 1.1.1.1) class III
           [Arabidopsis thaliana] gi|33589744|gb|AAQ22638.1|
           At5g43940/MRH10_4 [Arabidopsis thaliana]
          Length = 379

 Score =  187 bits (476), Expect = 5e-47
 Identities = 89/132 (67%), Positives = 103/132 (77%)
 Frame = +3

Query: 123 MSTIGKPIECKAAIAWEAKKPLEVRTVTVAPPGPGEVRVQIKATALCHTDAYTLDGLDPE 302
           M+T G+ I CKAA+A+E  KPL +  V VAPP  GEVR++I  TALCHTDAYT  G DPE
Sbjct: 1   MATQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPE 60

Query: 303 GLFPCILGHEAAGVVESVGEGVTSVKPGDHVIPCYQAYCGECKFCKHPESNLCVSVRAFT 482
           GLFPCILGHEAAG+VESVGEGVT V+ GDHVIPCYQA C ECKFCK  ++NLC  VR+ T
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSAT 120

Query: 483 GKGVMKSDGKPR 518
           G G+M +D K R
Sbjct: 121 GVGIMMNDRKSR 132



EST assemble image


clone accession position
1 MX062c04_r BP088510 1 314
2 MX036a10_r BP087512 1 342
3 LC020a04_r AV620279 18 519
4 MX009h03_r BP086482 23 489
5 CM022b06_r AV387842 53 618




Chlamydomonas reinhardtii
Kazusa DNA Research Institute