KCC001147A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001147A_C01 KCC001147A_c01
ttgatatcgtctgctgtgaaagcaaaccgtgtgcagaGTTCTTCCAGCTTCGATTCCTTG
CAGTAGTCCAAATGCTGAACCATCAACTAGGCAGTAAGCTCTTAAGTCGTTTACACTGAA
TTGGATATGCCTGCTAAGAAGAAGAAGACCGGTGACGGAGTAAAGAAGGCGAAGAAGCCA
ACTCCGCCGCTGGAACCTTTCGACTACACCCCACCAAATATTTACGAGCTTGGGGTGAAA
CCAAGCTTGTTTGTGAGGTGCAGAATCTGCTGCACCGCGCTGCCGCACCTGAACTTTGAG
TGGCCGGCGGTGCCGACGGAGCTGACTCTGGGCGCCATCAAGGAGGCTGTGGTGAAGCGG
CACGGCGGCGCCCTGCCGGAACTGTCGCTGTACAAGGACGTGGTGCACCCAGAGCACTCT
CTGGCGGGGGCCTCAGATGGGGACACGCTGAAGGACATTGGGATAGAAGGTGTGCACATG
GCTGAGGGCGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001147A_C01 KCC001147A_c01
         (492 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_311129.1| ENSANGP00000004749 [Anopheles gambiae] gi|30178...    47  1e-04
ref|ZP_00094773.1| COG5352: Uncharacterized protein conserved in...    42  0.003
emb|CAA78398.1| Pistil extensin like protein, partial CDS only [...    40  0.015
pir||A48232 cysteine-rich extensin-like protein 1 precursor - co...    40  0.015
ref|XP_293155.2| similar to dentin sialophosphoprotein; dentin p...    40  0.020

>ref|XP_311129.1| ENSANGP00000004749 [Anopheles gambiae] gi|30178092|gb|EAA06612.2|
           ENSANGP00000004749 [Anopheles gambiae str. PEST]
          Length = 633

 Score = 47.4 bits (111), Expect = 1e-04
 Identities = 37/108 (34%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
 Frame = -3

Query: 481 PCAHLLSQCPSACPHLRPPPESALGAPRPCTATVPAGRRRAASPQPP*WRPESAPSAPPA 302
           P A   S CP   P   PP     G P  CTA  P GR R+A        P S  SA PA
Sbjct: 533 PSAARPSGCPGRSPPSAPPAARPAGPPAACTARAPPGRSRSA--------PPSRSSAGPA 584

Query: 301 TQSS-GAAARCSRFCTSQTSLVSPQARKYLV--GCSRKVPAAELASSP 167
             S  G+   CS  C ++    SP A +     G SR  P      +P
Sbjct: 585 VASGCGSPPDCSASCAARPP-ASPAAPRSSAPPGASRPAPRPAAPGAP 631

 Score = 31.2 bits (69), Expect = 7.2
 Identities = 32/107 (29%), Positives = 44/107 (40%), Gaps = 9/107 (8%)
 Frame = -3

Query: 430 PPPESALGAPRPC-----TATVP-AGRRRAASPQPP*WRPESAPSAPPATQSSG---AAA 278
           P P  ++ AP P      T  +P A   RAA   PP   P  AP+ PP+ Q++G    AA
Sbjct: 443 PLPMPSMPAPPPAPIAFTTTLLPIAWPTRAARASPP-ALPFRAPARPPSAQAAGPGVVAA 501

Query: 277 RCSRFCTSQTSLVSPQARKYLVGCSRKVPAAELASSPSLLRHRSSSS 137
             +         V P +      C+   P +  A+ PS    RS  S
Sbjct: 502 AAAAAAAPAAVAVRPASPCTPSPCAAACPTSPSAARPSGCPGRSPPS 548

>ref|ZP_00094773.1| COG5352: Uncharacterized protein conserved in bacteria
           [Novosphingobium aromaticivorans]
          Length = 235

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 39/112 (34%), Positives = 48/112 (42%), Gaps = 13/112 (11%)
 Frame = -3

Query: 454 PSACPHLRPPPESALGAPRPCTATV-PAGRRRAASPQPP*WRPESAPSAPPATQSSGAAA 278
           P A     PPPE    APRP  A V PA   RAA+P P    PE  P AP A+  + AAA
Sbjct: 68  PKAAKPTAPPPEPKAAAPRPAPAPVAPAPAPRAATPAP---APE--PKAPAASADAPAAA 122

Query: 277 RCSRFCT------------SQTSLVSPQARKYLVGCSRKVPAAELASSPSLL 158
              R  +             Q + + P   + LV      P+ E+A   SLL
Sbjct: 123 PQPRIVSVGPGGFLRQGPGDQQAPIPPAPPRRLVPAR---PSPEIADKTSLL 171

>emb|CAA78398.1| Pistil extensin like protein, partial CDS only [Nicotiana tabacum]
          Length = 171

 Score = 40.0 bits (92), Expect = 0.015
 Identities = 22/53 (41%), Positives = 23/53 (42%)
 Frame = -3

Query: 454 PSACPHLRPPPESALGAPRPCTATVPAGRRRAASPQPP*WRPESAPSAPPATQ 296
           P  CP  RP P      PRPC +  P  R R     PP  RP   PS PP  Q
Sbjct: 26  PWPCPPPRPRPR-----PRPCPSPPPPPRPRPCPSPPPPPRPRPCPSPPPPPQ 73

 Score = 39.3 bits (90), Expect = 0.026
 Identities = 23/63 (36%), Positives = 28/63 (43%), Gaps = 1/63 (1%)
 Frame = -3

Query: 454 PSACPHLRPPPESALGAPRPCTATVPAGRRRAASPQPP*WRPESAPSAPPATQSSGA-AA 278
           P  CP   PPP      PRPC +  P  R R     PP  +P   PS PP +    A ++
Sbjct: 38  PRPCPSPPPPPR-----PRPCPSPPPPPRPRPCPSPPPPPQPRPRPSPPPPSPPPPAPSS 92

Query: 277 RCS 269
            CS
Sbjct: 93  SCS 95

 Score = 37.4 bits (85), Expect = 0.10
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = -3

Query: 490 RPQPC-AHLLSQCPSACPHLRPPPESALGAPRPCTATVPAGRRRAASPQPP*WRPESAPS 314
           RP+PC +      P  CP   PPP      PRPC +  P  + R     PP   P  APS
Sbjct: 37  RPRPCPSPPPPPRPRPCPSPPPPPR-----PRPCPSPPPPPQPRPRPSPPPPSPPPPAPS 91

Query: 313 APPATQSSGAAARC 272
           +  +        RC
Sbjct: 92  SSCSASDESNIYRC 105

>pir||A48232 cysteine-rich extensin-like protein 1 precursor - common tobacco
           gi|310923|gb|AAA34059.1| cysteine-rich extensin-like
           protein-1
          Length = 209

 Score = 40.0 bits (92), Expect = 0.015
 Identities = 22/53 (41%), Positives = 23/53 (42%)
 Frame = -3

Query: 454 PSACPHLRPPPESALGAPRPCTATVPAGRRRAASPQPP*WRPESAPSAPPATQ 296
           P  CP  RP P      PRPC +  P  R R     PP  RP   PS PP  Q
Sbjct: 64  PWPCPPPRPRPR-----PRPCPSPPPPPRPRPCPSPPPPPRPRPCPSPPPPPQ 111

 Score = 39.3 bits (90), Expect = 0.026
 Identities = 23/63 (36%), Positives = 28/63 (43%), Gaps = 1/63 (1%)
 Frame = -3

Query: 454 PSACPHLRPPPESALGAPRPCTATVPAGRRRAASPQPP*WRPESAPSAPPATQSSGA-AA 278
           P  CP   PPP      PRPC +  P  R R     PP  +P   PS PP +    A ++
Sbjct: 76  PRPCPSPPPPPR-----PRPCPSPPPPPRPRPCPSPPPPPQPRPRPSPPPPSPPPPAPSS 130

Query: 277 RCS 269
            CS
Sbjct: 131 SCS 133

 Score = 37.4 bits (85), Expect = 0.10
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = -3

Query: 490 RPQPC-AHLLSQCPSACPHLRPPPESALGAPRPCTATVPAGRRRAASPQPP*WRPESAPS 314
           RP+PC +      P  CP   PPP      PRPC +  P  + R     PP   P  APS
Sbjct: 75  RPRPCPSPPPPPRPRPCPSPPPPPR-----PRPCPSPPPPPQPRPRPSPPPPSPPPPAPS 129

Query: 313 APPATQSSGAAARC 272
           +  +        RC
Sbjct: 130 SSCSASDESNIYRC 143

>ref|XP_293155.2| similar to dentin sialophosphoprotein; dentin phosphophoryn;
           dentinogenesis imperfecta 1 [Homo sapiens]
          Length = 720

 Score = 39.7 bits (91), Expect = 0.020
 Identities = 38/134 (28%), Positives = 55/134 (40%), Gaps = 7/134 (5%)
 Frame = -3

Query: 487 PQPCAHLLSQCPSACPHLRPPPESALG----APRPCT---ATVPAGRRRAASPQPP*WRP 329
           P PC H L   P + P + PP  + L      P PC     T+  G   +  P PP    
Sbjct: 383 PSPCVHPLYPSPVSIPCIHPPVSTPLYPSPLCPSPCVHPPKTLKRGAMNSPGP-PPQMAL 441

Query: 328 ESAPSAPPATQSSGAAARCSRFCTSQTSLVSPQARKYLVGCSRKVPAAELASSPSLLRHR 149
           + A S  PA   +GA  R S       +L  P + +     S++ P++ L +S   L HR
Sbjct: 442 KLAGSGKPAPGLAGAWQRLSAEGQGPANLTPPNSDQ----LSQRRPSS-LKTSQQSLSHR 496

Query: 148 SSSS*QAYPIQCKR 107
            + S +     C R
Sbjct: 497 DTRSQRGQQSGCFR 510



EST assemble image


clone accession position
1 HC059d03_r AV636429 1 492
2 CM021g12_r AV387960 31 540




Chlamydomonas reinhardtii
Kazusa DNA Research Institute