KCC001146A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001146A_C01 KCC001146A_c01
ATTGCTTGGTATTTGTGACAACGCGCCTAGGCCCAACATTCATTTCCTTGGCGAGTCGAG
CCACCAGCTCTGTATTAACGTGCTCTTTCACATACCTTGCTGACATCCACATAGCATTTT
GTAAATAATTGTCTCCCGAGGCGTAGTCGTTTCTTGAGCCATGGCGCCGAGAGCACTCGT
TTGTCTGGGGCTCTTGCTTGGAGCGGTGGGCTATGCCTCAGCACTTGCGGGGCTAAAAAT
TGACCAATACAAGGACGACGCGACTGCAACTGCGACGCACGCGAAGTGGCGGACGAAGAC
GCGCCAGCTCCTGCAGACGGATGAGGACAGCGTGTGCTATGAGGGCTGCTTTGACGCGCC
CGACGCGCAGACGGACCCGCTGCCGGTGTTCCTGGTGGGCACCACTGACGGCTCGCCCAT
GCCGCTGCTGACTTGCTACACTGCCGCGCTGGAGGCCAACCTCACCTACTTTGCCATTGT
TGACGTGACCGACTGCTTCGGCGTGCACGAGATGGTCAATGCTGGGCGCCGACACTGCCC
CTGACTGGTGCTGAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001146A_C01 KCC001146A_c01
         (555 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAA34704.1| cathepsin L-like tick cysteine proteinase B [Hae...    43  0.003
dbj|BAC75595.1| hypothetical protein [Oryza sativa (japonica cul...    42  0.004
dbj|BAB20602.1| ORF1 [TT virus]                                        39  0.047
sp|P14328|SP96_DICDI Spore coat protein SP96 gi|84145|pir||S0763...    39  0.047
gb|AAO50776.1| similar to Dictyostelium discoideum (Slime mold)....    39  0.047

>dbj|BAA34704.1| cathepsin L-like tick cysteine proteinase B [Haemaphysalis
           longicornis]
          Length = 332

 Score = 42.7 bits (99), Expect = 0.003
 Identities = 28/95 (29%), Positives = 44/95 (45%), Gaps = 6/95 (6%)
 Frame = -2

Query: 476 WQSR*GWPPARQCSKSA-AAWASRQWCPPGTPAAGPSARRARQSSPHSTRCPHPSAGAGA 300
           W S  G      C++     WASR W     P+A  +AR A  ++P ST  P  ++   +
Sbjct: 142 WASHYGSLEGHTCARRCWYRWASRTWWTARNPSATTAARAASWTTPSSTSRPTRASTPRS 201

Query: 299 SSSATSRASQLQSRR-----PCIGQFLAPQVLRHS 210
           ++  T+R ++  SRR     P  G   +P+  R S
Sbjct: 202 ATPTTARTARATSRRPPWGPPTAGTLTSPRETRRS 236

>dbj|BAC75595.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 242

 Score = 42.4 bits (98), Expect = 0.004
 Identities = 38/106 (35%), Positives = 47/106 (43%), Gaps = 2/106 (1%)
 Frame = -2

Query: 506 ARRSSRSRQQWQSR*GWPPARQCSKSAAAWASRQWCPPG--TPAAGPSARRARQSSPHST 333
           ARR+SR R+   S  G PPAR C +     A+RQ  PP    P A P    ARQ  P   
Sbjct: 126 ARRASRRRRP-DSATGCPPARLC-RRPPIHAARQLQPPSHPPPPARPPRGPARQPPPPLG 183

Query: 332 RCPHPSAGAGASSSATSRASQLQSRRPCIGQFLAPQVLRHSPPLQA 195
               P A   A  ++  R S L + RP   +  AP      P L+A
Sbjct: 184 LGRRPPALRAARRASRRRRSDLAAARPPSARPGAPTAAARPPALRA 229

>dbj|BAB20602.1| ORF1 [TT virus]
          Length = 825

 Score = 38.9 bits (89), Expect = 0.047
 Identities = 29/88 (32%), Positives = 34/88 (37%)
 Frame = +3

Query: 162 WRREHSFVWGSCLERWAMPQHLRG*KLTNTRTTRLQLRRTRSGGRRRASSCRRMRTACAM 341
           WRR   + W     RW   +  R  +    R  R  +RR R G RR     R  RT    
Sbjct: 7   WRRRRPWWWKRRRRRWRRVRPRRARRTVRRRRRRYTVRRRRWGRRRG----RLRRT---- 58

Query: 342 RAALTRPTRRRTRCRCSWWAPLTARPCR 425
           R   TR  R+R       W P T R CR
Sbjct: 59  RWRRTRRRRKRKTLILRQWNPATVRSCR 86

>sp|P14328|SP96_DICDI Spore coat protein SP96 gi|84145|pir||S07638 spore coat protein
           SP96 precursor - slime mold  (Dictyostelium discoideum)
           gi|295736|emb|CAA34508.1| spore coat protein sp96
           [Dictyostelium discoideum]
          Length = 600

 Score = 38.9 bits (89), Expect = 0.047
 Identities = 38/135 (28%), Positives = 56/135 (41%)
 Frame = -1

Query: 528 RPALTISCTPKQSVTSTMAK*VRLASSAAV*QVSSGMGEPSVVPTRNTGSGSVCASGASK 349
           RP  T   T   S   + ++    + S+AV   +SG    S  P+ +  S S  +S AS 
Sbjct: 418 RPTTTTGSTSDSSALGSTSE-SSASGSSAVSSSASGSSAASSSPSSSAASSSPSSSAASS 476

Query: 348 QPS*HTLSSSVCRSWRVFVRHFACVAVAVASSLYWSIFSPASAEA*PTAPSKSPRQTSAL 169
            PS    SSS   S           + +  SS   S  +P+S+ +  +APS S   +SA 
Sbjct: 477 SPSSSAASSSPSSS---------ASSSSSPSSSASSSSAPSSSASSSSAPSSSASSSSAS 527

Query: 168 GAMAQETTTPRETII 124
            + A    T   T I
Sbjct: 528 SSSASSAATTAATTI 542

 Score = 33.5 bits (75), Expect = 2.0
 Identities = 25/96 (26%), Positives = 44/96 (45%)
 Frame = -2

Query: 554 SAPVRGSVGAQH*PSRARRSSRSRQQWQSR*GWPPARQCSKSAAAWASRQWCPPGTPAAG 375
           S+   GS  A   PS +  SS       S      A   S S++A +S       + ++ 
Sbjct: 447 SSSASGSSAASSSPSSSAASSSPSSSAASSSPSSSAASSSPSSSASSSSSPSSSASSSSA 506

Query: 374 PSARRARQSSPHSTRCPHPSAGAGASSSATSRASQL 267
           PS+  +  S+P S+     ++ + ASS+AT+ A+ +
Sbjct: 507 PSSSASSSSAPSSSASSSSASSSSASSAATTAATTI 542

>gb|AAO50776.1| similar to Dictyostelium discoideum (Slime mold). Spore coat
           protein SP96
          Length = 600

 Score = 38.9 bits (89), Expect = 0.047
 Identities = 38/135 (28%), Positives = 56/135 (41%)
 Frame = -1

Query: 528 RPALTISCTPKQSVTSTMAK*VRLASSAAV*QVSSGMGEPSVVPTRNTGSGSVCASGASK 349
           RP  T   T   S   + ++    + S+AV   +SG    S  P+ +  S S  +S AS 
Sbjct: 418 RPTTTTGSTSDSSALGSTSE-SSASGSSAVSSSASGSSAASSSPSSSAASSSPSSSAASS 476

Query: 348 QPS*HTLSSSVCRSWRVFVRHFACVAVAVASSLYWSIFSPASAEA*PTAPSKSPRQTSAL 169
            PS    SSS   S           + +  SS   S  +P+S+ +  +APS S   +SA 
Sbjct: 477 SPSSSAASSSPSSS---------ASSSSSPSSSASSSSAPSSSASSSSAPSSSASSSSAS 527

Query: 168 GAMAQETTTPRETII 124
            + A    T   T I
Sbjct: 528 SSSASSAATTAATTI 542

 Score = 33.5 bits (75), Expect = 2.0
 Identities = 25/96 (26%), Positives = 44/96 (45%)
 Frame = -2

Query: 554 SAPVRGSVGAQH*PSRARRSSRSRQQWQSR*GWPPARQCSKSAAAWASRQWCPPGTPAAG 375
           S+   GS  A   PS +  SS       S      A   S S++A +S       + ++ 
Sbjct: 447 SSSASGSSAASSSPSSSAASSSPSSSAASSSPSSSAASSSPSSSASSSSSPSSSASSSSA 506

Query: 374 PSARRARQSSPHSTRCPHPSAGAGASSSATSRASQL 267
           PS+  +  S+P S+     ++ + ASS+AT+ A+ +
Sbjct: 507 PSSSASSSSAPSSSASSSSASSSSASSAATTAATTI 542



EST assemble image


clone accession position
1 MX220b08_r BP090186 1 419
2 CM021e01_r AV387968 128 682




Chlamydomonas reinhardtii
Kazusa DNA Research Institute