KCC001144A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001144A_C01 KCC001144A_c01
TGATGCTCAAGGCCAGTCCCGCTGCTCGCGCTGCTGCTCGCCCTGCTGCTCGCAACGTGC
GCATGATGGCCGCGCCGGTCTCAACCCAGCTGAGCCAGGATGAGCTGAAGAAGCAGGCTG
CCTGGAAGGCTGTTGAGTACGTTAAGAGCGGCATGGTGGTTGGCCTGGGCACGGGCTCGA
CCGCTGCGTTCGCGGTGGACCGGATCGGCCAGCTGCTGAAGGAGGGCAAGCTGCAGAACA
TCGTCGGTGTGCCCACCTCGATCCGCACCTACGAGCAGGCTCTGTCTCTGGGCATTCCTC
TGGCCACTCTGGATGAGCAGCCCAAGCTGGACGTCGCCATCGATGGTGCCGACGAGGTGG
ACCCCAACCTGGACGTGGTGAAGGGCCGCGGTGGCGCTCTTCTGCGCGAAAAGATGGTGG
AGATGGCCTCGGCTAAGTTTGTTTGCATCGTGGACGACTCCAAGCTGGTCGAGGGCCTGG
GCGGCTCCAAGCTGGCCATGCCGGTGGAGATTGTGCCGTCCTGCCACAAGTACACCCTGC
AGCGCCTGGCTAACCTGCCCGAGGTGAAGGGCTGCAGCTAGCTGGCTGAACGGGAAGCCT
CTTGCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001144A_C01 KCC001144A_c01
         (607 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAL77589.1|L43068_1 ribose-5-phosphate isomerase [Spinacia ol...   228  4e-59
ref|NP_178238.1| ribose 5-phosphate isomerase -related [Arabidop...   226  2e-58
dbj|BAC83439.1| putative ribose-5-phosphate isomerase [Oryza sat...   220  1e-56
dbj|BAC83440.1| putative ribose-5-phosphate isomerase [Oryza sat...   219  2e-56
ref|NP_187130.1| ribose 5-phosphate isomerase -related [Arabidop...   217  1e-55

>gb|AAL77589.1|L43068_1 ribose-5-phosphate isomerase [Spinacia oleracea]
          Length = 289

 Score =  228 bits (582), Expect = 4e-59
 Identities = 117/174 (67%), Positives = 145/174 (83%), Gaps = 1/174 (0%)
 Frame = +3

Query: 57  VRMMAAPVSTQ-LSQDELKKQAAWKAVEYVKSGMVVGLGTGSTAAFAVDRIGQLLKEGKL 233
           ++ +++P  T  L+QD+LKK AA KAV+ VKSGMV+GLGTGSTAAFAV RIG+LL  GKL
Sbjct: 44  IKSLSSPSPTPVLTQDDLKKLAAEKAVDSVKSGMVLGLGTGSTAAFAVSRIGELLSAGKL 103

Query: 234 QNIVGVPTSIRTYEQALSLGIPLATLDEQPKLDVAIDGADEVDPNLDVVKGRGGALLREK 413
            NIVG+PTS RT EQA SLGIPL+ LD+ P++D+AIDGADEVDP+L++VKGRGGALLREK
Sbjct: 104 TNIVGIPTSKRTAEQAASLGIPLSVLDDHPRIDLAIDGADEVDPDLNLVKGRGGALLREK 163

Query: 414 MVEMASAKFVCIVDDSKLVEGLGGSKLAMPVEIVPSCHKYTLQRLANLPEVKGC 575
           MVE AS KF+ +VDD+KLV+GLGGS+LAMPVE+V  C KY L+RL  + +  GC
Sbjct: 164 MVEAASDKFIVVVDDTKLVDGLGGSRLAMPVEVVQFCWKYNLKRLQEIFKELGC 217

>ref|NP_178238.1| ribose 5-phosphate isomerase -related [Arabidopsis thaliana]
           gi|6226027|sp|Q9ZU38|RPIA_ARATH Probable ribose
           5-phosphate isomerase (Phosphoriboisomerase)
           gi|25329401|pir||H84422 probable ribose 5-phosphate
           isomerase [imported] - Arabidopsis thaliana
           gi|4262236|gb|AAD14529.1| putative ribose 5-phosphate
           isomerase [Arabidopsis thaliana]
           gi|15809810|gb|AAL06833.1| At2g01290/F10A8.17
           [Arabidopsis thaliana] gi|17978867|gb|AAL47405.1|
           At2g01290/F10A8.17 [Arabidopsis thaliana]
          Length = 265

 Score =  226 bits (576), Expect = 2e-58
 Identities = 114/167 (68%), Positives = 142/167 (84%)
 Frame = +3

Query: 75  PVSTQLSQDELKKQAAWKAVEYVKSGMVVGLGTGSTAAFAVDRIGQLLKEGKLQNIVGVP 254
           P    L+QDELK+ AA+KAVE+V+SGMV+GLGTGSTA  AVDRIG+LL++GKL+NIVG+P
Sbjct: 26  PQPMNLTQDELKRIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLENIVGIP 85

Query: 255 TSIRTYEQALSLGIPLATLDEQPKLDVAIDGADEVDPNLDVVKGRGGALLREKMVEMASA 434
           TS +T EQALSLGIPL+ LD  P +D++IDGADEVDP L++VKGRGG+LLREKM+E AS 
Sbjct: 86  TSKKTQEQALSLGIPLSDLDAHPVIDLSIDGADEVDPFLNLVKGRGGSLLREKMIEGASK 145

Query: 435 KFVCIVDDSKLVEGLGGSKLAMPVEIVPSCHKYTLQRLANLPEVKGC 575
           KFV IVDDSK+V+ +GGSKLA+PVEIVP C K+T ++L +L E  GC
Sbjct: 146 KFVVIVDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSLLEGYGC 192

>dbj|BAC83439.1| putative ribose-5-phosphate isomerase [Oryza sativa (japonica
           cultivar-group)]
          Length = 280

 Score =  220 bits (561), Expect = 1e-56
 Identities = 122/197 (61%), Positives = 148/197 (74%), Gaps = 11/197 (5%)
 Frame = +3

Query: 18  PAARAA--------ARPAARNVRMMAAPVSTQ---LSQDELKKQAAWKAVEYVKSGMVVG 164
           PAA AA        +R  +  +R  +AP S     L+QD+LK+ AA +AVE V+SGMV+G
Sbjct: 12  PAASAARCGGGSRRSRRLSGVIRAQSAPASAAAAALTQDDLKRLAAVRAVEQVESGMVLG 71

Query: 165 LGTGSTAAFAVDRIGQLLKEGKLQNIVGVPTSIRTYEQALSLGIPLATLDEQPKLDVAID 344
           LGTGSTAAFAV  IG LL  GKL  IVGVPTS RT+EQA SLGIPL+TLD+ P++D+AID
Sbjct: 72  LGTGSTAAFAVAEIGALLASGKLSGIVGVPTSKRTFEQAQSLGIPLSTLDDHPRIDLAID 131

Query: 345 GADEVDPNLDVVKGRGGALLREKMVEMASAKFVCIVDDSKLVEGLGGSKLAMPVEIVPSC 524
           GADEVDP+L++VKGRGGALLREKMVE AS KF+ +VD++KLV GLGGS LAMPVE+V  C
Sbjct: 132 GADEVDPDLNLVKGRGGALLREKMVEAASDKFIVVVDETKLVTGLGGSGLAMPVEVVQFC 191

Query: 525 HKYTLQRLANLPEVKGC 575
            KY   RL +L   +GC
Sbjct: 192 WKYNQVRLQDLFNDEGC 208

>dbj|BAC83440.1| putative ribose-5-phosphate isomerase [Oryza sativa (japonica
           cultivar-group)]
          Length = 258

 Score =  219 bits (559), Expect = 2e-56
 Identities = 118/178 (66%), Positives = 140/178 (78%)
 Frame = +3

Query: 42  PAARNVRMMAAPVSTQLSQDELKKQAAWKAVEYVKSGMVVGLGTGSTAAFAVDRIGQLLK 221
           PAA   R  AA     L+QD+LK+ AA +AVE V+SGMV+GLGTGSTAAFAV  IG LL 
Sbjct: 12  PAASAARSAAAAA---LTQDDLKRLAAVRAVEQVESGMVLGLGTGSTAAFAVAEIGALLA 68

Query: 222 EGKLQNIVGVPTSIRTYEQALSLGIPLATLDEQPKLDVAIDGADEVDPNLDVVKGRGGAL 401
            GKL  IVGVPTS RT+EQA SLGIPL+TLD+ P++D+AIDGADEVDP+L++VKGRGGAL
Sbjct: 69  SGKLSGIVGVPTSKRTFEQAQSLGIPLSTLDDHPRIDLAIDGADEVDPDLNLVKGRGGAL 128

Query: 402 LREKMVEMASAKFVCIVDDSKLVEGLGGSKLAMPVEIVPSCHKYTLQRLANLPEVKGC 575
           LREKMVE AS KF+ +VD++KLV GLGGS LAMPVE+V  C KY   RL +L   +GC
Sbjct: 129 LREKMVEAASDKFIVVVDETKLVTGLGGSGLAMPVEVVQFCWKYNQVRLQDLFNDEGC 186

>ref|NP_187130.1| ribose 5-phosphate isomerase -related [Arabidopsis thaliana]
           gi|6175179|gb|AAF04905.1|AC011437_20 putative ribose
           5-phosphate isomerase [Arabidopsis thaliana]
           gi|12322865|gb|AAG51427.1|AC009465_27 putative ribose
           5-phosphate isomerase; 91580-90750 [Arabidopsis
           thaliana] gi|15027857|gb|AAK76459.1| putative ribose
           5-phosphate isomerase [Arabidopsis thaliana]
           gi|23296784|gb|AAN13169.1| putative ribose 5-phosphate
           isomerase [Arabidopsis thaliana]
          Length = 276

 Score =  217 bits (552), Expect = 1e-55
 Identities = 116/187 (62%), Positives = 138/187 (73%)
 Frame = +3

Query: 15  SPAARAAARPAARNVRMMAAPVSTQLSQDELKKQAAWKAVEYVKSGMVVGLGTGSTAAFA 194
           S A R+       +V       S  LSQD+LKK AA KAVE +K GMV+GLGTGSTAAFA
Sbjct: 18  SIALRSTGSSPRTSVSFSVKAQSVALSQDDLKKLAAEKAVEAIKPGMVLGLGTGSTAAFA 77

Query: 195 VDRIGQLLKEGKLQNIVGVPTSIRTYEQALSLGIPLATLDEQPKLDVAIDGADEVDPNLD 374
           VD+IG+LL  G+L +IVG+PTS RT EQA SLGIPL  LD  P++D+AIDGADEVDPNLD
Sbjct: 78  VDQIGKLLSSGELYDIVGIPTSKRTEEQARSLGIPLVGLDTHPRIDLAIDGADEVDPNLD 137

Query: 375 VVKGRGGALLREKMVEMASAKFVCIVDDSKLVEGLGGSKLAMPVEIVPSCHKYTLQRLAN 554
           +VKGRGGALLREKMVE  + KF+ + DD+KLV GLGGS LAMPVE+V  C  + L RL +
Sbjct: 138 LVKGRGGALLREKMVEAVADKFIVVADDTKLVTGLGGSGLAMPVEVVQFCWNFNLIRLQD 197

Query: 555 LPEVKGC 575
           L +  GC
Sbjct: 198 LFKEFGC 204



EST assemble image


clone accession position
1 LC034g06_r AV621346 1 604
2 CM063c11_r AV390085 72 695
3 MX066a03_r BP088658 73 342
4 HC001h11_r AV631939 73 599
5 CM021c10_r AV387933 81 649
6 HCL075e11_r AV643764 85 595
7 HC044e04_r AV635295 93 536
8 MX224g10_r BP090497 98 491
9 CM024g07_r AV388236 98 709
10 HC039e01_r AV634903 201 677




Chlamydomonas reinhardtii
Kazusa DNA Research Institute