KCC001141A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001141A_C01 KCC001141A_c01
tagtcccCCATACTGGTATTCATTATAATCTTTTGTAGACCCACTTGTCAGTGGGCACTG
CCCCTAGAAGCGGCTTCTTGACCAGAGAAGATGCGCTCAGCCGTTCTACAACGCGGCCAG
GCGCGGCGAGTGTCTTGCCGGGTTCGGGCGGATGGTTCGGGCGTGGATTCGCTGCCCTCG
ACCAGCGCCAGCAGCAGCGCACGCCCTCTCATTGATCGCCGTCAGCTCCTGACCGGTGCT
GCTGCGTCGGTCATAACCTTCGTTGGCTGCCCTTGCCCCCTGTGCAAGCCTGGGGAGGCA
AAGGCCGCAGCTTGGAACTATGGCGAAGTTGCGGGTCCGCCAACCTGGAAGGGTGTGTGT
GCGACGGGCAAGCGCCAGTCGCCCATCAACATCCCGTTGAACACATCGGCGCCGAAGGTC
GACGCGGAGATGGGCGAATTCGATTTCGCCTACGGCAGCTTCGAGAAGTGCGACGTGCTG
AACACGGGACACGGCACCATGCAGGTGAACTTCCCCGCTGGCAACCTGGCGTTCATTGGC
AACATGGAGCTGGAGCTGCTGCAGTTCCACTTCCACGCGCCCTCGGAGCACGCCATGGAT
GGCCGCCGTTACGCCATGGAGGCGCATCTGGTGCACAAGAATAAAAGCACCGGCAACCTA
GCTGTGCTGGGCATTATGCTGGAGCCCGGCGGCCTGATCAAGAACCCGGCGCTGTCCACT
GCTCTGGAGGTGGCGCCCGAGGTGCCCCTGGCCAAGAAGCCCTCGCCCAAGGGCATCAAC
CCCGTCATGCTGCTGCCCAAGAAGAGCAAGGCCGGGACACGGCCGTTCGTGCACTACCCT
GGCTCGCTTACCACGCCCCCGTGTTCGGAGGGGGTGGACTGGTTTGTGTTCATGCAGCCC
ATCAAGGTGCCCGACAGCCAGATCCTGGACTTCATGCGCTTCGTGGGCGACAACA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001141A_C01 KCC001141A_c01
         (955 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T08078 carbonate dehydratase (EC 4.2.1.1) precursor, alpha ...   591  e-168
ref|NP_767777.1| cah [Bradyrhizobium japonicum] gi|27349388|dbj|...   140  4e-32
ref|XP_306434.1| ENSANGP00000001812 [Anopheles gambiae] gi|21290...   140  4e-32
ref|NP_435267.1| Probable carbonic anhydrase, Cah [Sinorhizobium...   138  2e-31
ref|ZP_00010382.1| COG3338: Carbonic anhydrase [Rhodopseudomonas...   137  2e-31

>pir||T08078 carbonate dehydratase (EC 4.2.1.1) precursor, alpha type -
           Chlamydomonas reinhardtii gi|2301259|gb|AAB65498.1| CAH3
           Protein Sequense gi|2992472|gb|AAC49983.1| intracellular
           carbonic anhydrase, alpha type [Chlamydomonas
           reinhardtii]
          Length = 310

 Score =  591 bits (1524), Expect = e-168
 Identities = 288/288 (100%), Positives = 288/288 (100%)
 Frame = +1

Query: 91  MRSAVLQRGQARRVSCRVRADGSGVDSLPSTSASSSARPLIDRRQLLTGAAASVITFVGC 270
           MRSAVLQRGQARRVSCRVRADGSGVDSLPSTSASSSARPLIDRRQLLTGAAASVITFVGC
Sbjct: 1   MRSAVLQRGQARRVSCRVRADGSGVDSLPSTSASSSARPLIDRRQLLTGAAASVITFVGC 60

Query: 271 PCPLCKPGEAKAAAWNYGEVAGPPTWKGVCATGKRQSPINIPLNTSAPKVDAEMGEFDFA 450
           PCPLCKPGEAKAAAWNYGEVAGPPTWKGVCATGKRQSPINIPLNTSAPKVDAEMGEFDFA
Sbjct: 61  PCPLCKPGEAKAAAWNYGEVAGPPTWKGVCATGKRQSPINIPLNTSAPKVDAEMGEFDFA 120

Query: 451 YGSFEKCDVLNTGHGTMQVNFPAGNLAFIGNMELELLQFHFHAPSEHAMDGRRYAMEAHL 630
           YGSFEKCDVLNTGHGTMQVNFPAGNLAFIGNMELELLQFHFHAPSEHAMDGRRYAMEAHL
Sbjct: 121 YGSFEKCDVLNTGHGTMQVNFPAGNLAFIGNMELELLQFHFHAPSEHAMDGRRYAMEAHL 180

Query: 631 VHKNKSTGNLAVLGIMLEPGGLIKNPALSTALEVAPEVPLAKKPSPKGINPVMLLPKKSK 810
           VHKNKSTGNLAVLGIMLEPGGLIKNPALSTALEVAPEVPLAKKPSPKGINPVMLLPKKSK
Sbjct: 181 VHKNKSTGNLAVLGIMLEPGGLIKNPALSTALEVAPEVPLAKKPSPKGINPVMLLPKKSK 240

Query: 811 AGTRPFVHYPGSLTTPPCSEGVDWFVFMQPIKVPDSQILDFMRFVGDN 954
           AGTRPFVHYPGSLTTPPCSEGVDWFVFMQPIKVPDSQILDFMRFVGDN
Sbjct: 241 AGTRPFVHYPGSLTTPPCSEGVDWFVFMQPIKVPDSQILDFMRFVGDN 288

>ref|NP_767777.1| cah [Bradyrhizobium japonicum] gi|27349388|dbj|BAC46402.1| cah
           [Bradyrhizobium japonicum USDA 110]
          Length = 291

 Score =  140 bits (352), Expect = 4e-32
 Identities = 85/260 (32%), Positives = 133/260 (50%), Gaps = 9/260 (3%)
 Frame = +1

Query: 187 ASSSARPLIDRRQLLTGAAASVITFVGCPCPLCKPG-EAKAAAWNYGEVAGPPTWKGV-- 357
           ++SS   +++RR  L   A   +      CP+CKP   A+   W+Y     P  W  +  
Sbjct: 34  SNSSWGNMMNRRHALKALAGLAL------CPVCKPAFAAEGVHWSYEGAGAPAKWGDLDA 87

Query: 358 ----CATGKRQSPINIP--LNTSAPKVDAEMGEFDFAYGSFEKCDVLNTGHGTMQVNFPA 519
               CA G +QSPI+I   + +  P +    G+            ++N GH T+Q+NF  
Sbjct: 88  ANKACAVGLQQSPIDIEATIKSQLPTLKLNWGK--------SADTIVNNGH-TIQLNFAE 138

Query: 520 GNLAFIGNMELELLQFHFHAPSEHAMDGRRYAMEAHLVHKNKSTGNLAVLGIMLEPGGLI 699
           G+   +G+++ +LLQ HFH PSEH + G+ + MEAH VH+N   G LAV+G+++  G   
Sbjct: 139 GSTLTLGDVKYKLLQVHFHRPSEHMIGGKNFPMEAHFVHRN-DAGGLAVVGVLMAEGK-- 195

Query: 700 KNPALSTALEVAPEVPLAKKPSPKGINPVMLLPKKSKAGTRPFVHYPGSLTTPPCSEGVD 879
            NPA    ++  P        +   I+P+ +LP +       +  YPGSLTTPPCSE V+
Sbjct: 196 PNPAFGKIVKTMPAADGPAVKADASIDPLAMLPTRLS-----YFRYPGSLTTPPCSEVVE 250

Query: 880 WFVFMQPIKVPDSQILDFMR 939
           W +   PI+V  + +  F +
Sbjct: 251 WLLLTTPIQVSAADVAAFAK 270

>ref|XP_306434.1| ENSANGP00000001812 [Anopheles gambiae] gi|21290171|gb|EAA02316.1|
           ENSANGP00000001812 [Anopheles gambiae str. PEST]
          Length = 241

 Score =  140 bits (352), Expect = 4e-32
 Identities = 91/221 (41%), Positives = 115/221 (51%), Gaps = 6/221 (2%)
 Frame = +1

Query: 280 LCKPGEAKAAAWNYGEVAGPPTWK------GVCATGKRQSPINIPLNTSAPKVDAEMGEF 441
           LC    A    W Y   AGP  W       G CA G  QSP+N+        VDAE+   
Sbjct: 12  LCPAAFAATPHWEYSGEAGPAQWARLTPEFGQCA-GSNQSPVNLD-----GLVDAELAPL 65

Query: 442 DFAYGSFEKCDVLNTGHGTMQVNFPAGNLAFIGNMELELLQFHFHAPSEHAMDGRRYAME 621
            F Y +  +  V N GH T+QV++  G+   +  M  EL QFHFHAPSE+ + G  Y +E
Sbjct: 66  QFHYLAGGR-SVTNNGH-TVQVDYAPGSRLELDGMRFELKQFHFHAPSENLIKGHSYPLE 123

Query: 622 AHLVHKNKSTGNLAVLGIMLEPGGLIKNPALSTALEVAPEVPLAKKPSPKGINPVMLLPK 801
            HLVH N + G LAV+ +M EPG    N ALS A +V P          + I+   LLP 
Sbjct: 124 GHLVHIN-AKGELAVVAVMFEPGQ--ANAALSQAWQVLPAKAGESHAFKEPISAEQLLPA 180

Query: 802 KSKAGTRPFVHYPGSLTTPPCSEGVDWFVFMQPIKVPDSQI 924
           K     R +  + GSLTTPPCSEGV W V  QP++V  +QI
Sbjct: 181 K-----RDYYRFSGSLTTPPCSEGVRWLVMKQPVQVSQAQI 216

>ref|NP_435267.1| Probable carbonic anhydrase, Cah [Sinorhizobium meliloti]
           gi|25291475|pir||E95264 probable carbonate dehydratase
           (EC 4.2.1.1) [imported] - Sinorhizobium meliloti (strain
           1021) magaplasmid pSymA gi|14523078|gb|AAK64679.1|
           Probable carbonic anhydrase, Cah [Sinorhizobium
           meliloti]
          Length = 249

 Score =  138 bits (347), Expect = 2e-31
 Identities = 96/249 (38%), Positives = 121/249 (48%), Gaps = 8/249 (3%)
 Frame = +1

Query: 211 IDRRQLLTGAAASVITFVGCPCPLCKPGE--AKAAAWNYGEVAGPPTW------KGVCAT 366
           ++RR  L G A          CPLC      A+   W Y    GP  W         C+ 
Sbjct: 1   MERRDFLRGLALLAA------CPLCVKTAYAAEGVHWRYEGEEGPEHWGSLAKENSACSA 54

Query: 367 GKRQSPINIPLNTSAPKVDAEMGEFDFAYGSFEKCDVLNTGHGTMQVNFPAGNLAFIGNM 546
           G +QSPI+I     A K D      D+  G      +LN GH T+QVN   G L   G+ 
Sbjct: 55  GSQQSPIDI---RGAVKADIPELTADWKSGG----TILNNGH-TIQVNAAGGTLRR-GDK 105

Query: 547 ELELLQFHFHAPSEHAMDGRRYAMEAHLVHKNKSTGNLAVLGIMLEPGGLIKNPALSTAL 726
             +L+Q+HFH+PSEH +DG+ + MEAH VHKN  TG L VLG+ L PG    N   ++  
Sbjct: 106 SYDLVQYHFHSPSEHFVDGKSFPMEAHFVHKNAETGTLGVLGVFLVPGA--ANSTFASLA 163

Query: 727 EVAPEVPLAKKPSPKGINPVMLLPKKSKAGTRPFVHYPGSLTTPPCSEGVDWFVFMQPIK 906
           E  P  P  + P    I+P  LLP      T     Y GSLTTPPCSE VDW V M+ ++
Sbjct: 164 EKFPRNPGEESPLIT-IDPKGLLPSSLSYWT-----YEGSLTTPPCSEIVDWMVAMEAVE 217

Query: 907 VPDSQILDF 933
           V    I  F
Sbjct: 218 VDPGDIKKF 226

>ref|ZP_00010382.1| COG3338: Carbonic anhydrase [Rhodopseudomonas palustris]
          Length = 292

 Score =  137 bits (346), Expect = 2e-31
 Identities = 89/263 (33%), Positives = 127/263 (47%), Gaps = 9/263 (3%)
 Frame = +1

Query: 178 STSASSSARPLIDRRQLLTGAAASVITFVGCPCPLCKPGEAKAAA---WNYGEVAGPPTW 348
           ++S +S+    +DRR +L   A   +      CPLC    A A     W Y    GP  W
Sbjct: 30  ASSRASTPETSMDRRNILKAFAGLAL------CPLCATAGAAAEGAHHWGYEGEGGPAKW 83

Query: 349 ------KGVCATGKRQSPINIPLNTSAPKVDAEMGEFDFAYGSFEKCDVLNTGHGTMQVN 510
                   +C+ G +QSP++I    SA     ++   D A        ++N GH T+Q+N
Sbjct: 84  GEIDPANQICSIGVQQSPVDIRSTVSANLFPLQVQWADTAD------TIINNGH-TIQLN 136

Query: 511 FPAGNLAFIGNMELELLQFHFHAPSEHAMDGRRYAMEAHLVHKNKSTGNLAVLGIMLEPG 690
              G+   +G    +L+QFHFH PSEH +DG+ + ME H VH+  S G L V+G++++ G
Sbjct: 137 VAEGSTLKLGGATFKLVQFHFHRPSEHQIDGKSFPMEVHFVHRMDS-GTLGVVGVLMQEG 195

Query: 691 GLIKNPALSTALEVAPEVPLAKKPSPKGINPVMLLPKKSKAGTRPFVHYPGSLTTPPCSE 870
               N A +  +   P+       +  GINP  LLP K       +  Y GSLTTPPCSE
Sbjct: 196 A--ANAAFAKIVATMPQSEGPAVKADAGINPNALLPAK-----LGYYRYEGSLTTPPCSE 248

Query: 871 GVDWFVFMQPIKVPDSQILDFMR 939
            VDW V   PI V    +  F +
Sbjct: 249 VVDWMVLTDPITVAAEDVAAFAK 271



EST assemble image


clone accession position
1 LC027h09_r AV620870 1 541
2 LC068d08_r AV623770 8 523
3 LC018c03_r AV620148 8 421
4 LCL048d03_r AV628878 13 328
5 HC040b06_r AV634960 13 558
6 HC080e03_r AV638003 21 458
7 MX240a12_r BP091505 27 507
8 MX059e06_r BP088403 35 363
9 HC032a11_r AV634336 40 552
10 CM021b02_r AV387921 330 927
11 LCL008e04_r AV626401 459 955




Chlamydomonas reinhardtii
Kazusa DNA Research Institute