KCC001140A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001140A_C01 KCC001140A_c01
tgcgaacaaactgtcattaatacgctagcttttCCGTGAGTCAAGGGTGTTGCAGCGCTC
CTCAGACTTGCAACGCAACTTGCAAATCCATCGCTTCTACCTGAGTTGTCATACACACAC
GATTCCACCGACTAGCGCAGCCACAACCGCAGTCGTTTTCTTCCGGGAGTTTCACCCATG
CAGACGCAGCTCGCTCAACGACAGGCAGCAGGCCTGAAGGCGCCGCTGCGCTTCTGCTAT
GTCGTTCCAGCTGCACGGAGTCGACGCGTGACGCTTTGTCGCGCGTTTGCGGAGAACGGA
AACGGCGAAGCCAAAAAGGAGAAGCCTCATATTCACACCAGGCTTGCCATAATTGGTGGC
GGCCCCGCGGCACACACCGCCGCTATCTATGCGGGCCGCGCTGAGCTGGAGCCCATTCTG
TTCGAGGGCTGGATGGCTGCTGGCATCGCGCCCGGCGGCCAGCTGACCACCACCTCCTTC
GTGGAGAACTTCCCGGGCTTTGTGGAGCCCATCATGnGCTACGAGCTGACGGGACAGTTC
AGGGCCAGAGCCTGCGGTCCGCCCCCAATTTTACGGGAAGGCCCCCCTGGCCGTGGTAAG
GCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001140A_C01 KCC001140A_c01
         (603 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO42318.1| putative thioredoxin reductase (NADPH) 2 [Arabido...   108  4e-23
ref|NP_195271.1| thioredoxin reductase 1 (NADPH-dependent thiore...   108  4e-23
pir||S44027 thioredoxin-disulfide reductase (EC 1.8.1.9) 2 [vali...   108  4e-23
pdb|1VDC|   Structure Of Nadph Dependent Thioredoxin Reductase        108  4e-23
sp|Q39242|TRB2_ARATH Thioredoxin reductase 2 (NADPH-dependent th...   103  2e-21

>gb|AAO42318.1| putative thioredoxin reductase (NADPH) 2 [Arabidopsis thaliana]
          Length = 333

 Score =  108 bits (271), Expect = 4e-23
 Identities = 52/73 (71%), Positives = 61/73 (83%)
 Frame = +1

Query: 334 HTRLAIIGGGPAAHTAAIYAGRAELEPILFEGWMAAGIAPGGQLTTTSFVENFPGFVEPI 513
           +TRL I+G GPAAHTAAIYA RAEL+P+LFEGWMA  IAPGGQLTTT+ VENFPGF E I
Sbjct: 8   NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGI 67

Query: 514 MXYELTGQFRARA 552
           +  ELT +FR ++
Sbjct: 68  LGVELTDKFRKQS 80

>ref|NP_195271.1| thioredoxin reductase 1 (NADPH-dependent thioredoxin reductase 1)
           (NTR1) [Arabidopsis thaliana]
           gi|12644432|sp|Q39243|TRB1_ARATH Thioredoxin reductase 1
           (NADPH-dependent thioredoxin reductase 1) (NTR 1)
           gi|7488370|pir||T41743 thioredoxin-disulfide reductase
           (EC 1.8.1.9) 2 - Arabidopsis thaliana
           gi|5830788|emb|CAB54874.1| thioredoxin reductase (NADPH)
           2 [Arabidopsis thaliana] gi|7270497|emb|CAB80262.1|
           thioredoxin reductase (NADPH) 2 [Arabidopsis thaliana]
          Length = 333

 Score =  108 bits (271), Expect = 4e-23
 Identities = 52/73 (71%), Positives = 61/73 (83%)
 Frame = +1

Query: 334 HTRLAIIGGGPAAHTAAIYAGRAELEPILFEGWMAAGIAPGGQLTTTSFVENFPGFVEPI 513
           +TRL I+G GPAAHTAAIYA RAEL+P+LFEGWMA  IAPGGQLTTT+ VENFPGF E I
Sbjct: 8   NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGI 67

Query: 514 MXYELTGQFRARA 552
           +  ELT +FR ++
Sbjct: 68  LGVELTDKFRKQS 80

>pir||S44027 thioredoxin-disulfide reductase (EC 1.8.1.9) 2 [validated] -
           Arabidopsis thaliana
          Length = 333

 Score =  108 bits (271), Expect = 4e-23
 Identities = 52/73 (71%), Positives = 61/73 (83%)
 Frame = +1

Query: 334 HTRLAIIGGGPAAHTAAIYAGRAELEPILFEGWMAAGIAPGGQLTTTSFVENFPGFVEPI 513
           +TRL I+G GPAAHTAAIYA RAEL+P+LFEGWMA  IAPGGQLTTT+ VENFPGF E I
Sbjct: 8   NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGI 67

Query: 514 MXYELTGQFRARA 552
           +  ELT +FR ++
Sbjct: 68  LGVELTDKFRKQS 80

>pdb|1VDC|   Structure Of Nadph Dependent Thioredoxin Reductase
          Length = 333

 Score =  108 bits (271), Expect = 4e-23
 Identities = 52/73 (71%), Positives = 61/73 (83%)
 Frame = +1

Query: 334 HTRLAIIGGGPAAHTAAIYAGRAELEPILFEGWMAAGIAPGGQLTTTSFVENFPGFVEPI 513
           +TRL I+G GPAAHTAAIYA RAEL+P+LFEGWMA  IAPGGQLTTT+ VENFPGF E I
Sbjct: 8   NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGI 67

Query: 514 MXYELTGQFRARA 552
           +  ELT +FR ++
Sbjct: 68  LGVELTDKFRKQS 80

>sp|Q39242|TRB2_ARATH Thioredoxin reductase 2 (NADPH-dependent thioredoxin reductase 2)
           (NTR 2) gi|25528214|pir||A84552 probable thioredoxin
           reductase [imported] - Arabidopsis thaliana
           gi|2262173|gb|AAB86519.1| putative thioredoxin reductase
           [Arabidopsis thaliana]
          Length = 383

 Score =  103 bits (257), Expect = 2e-21
 Identities = 52/108 (48%), Positives = 74/108 (68%), Gaps = 3/108 (2%)
 Frame = +1

Query: 238 YVVPAARSRRVTLCRAFAENGNGEAKKEKPHIHT---RLAIIGGGPAAHTAAIYAGRAEL 408
           +++ +A S   +L  AF+ + +  +      + T   ++ I+G GPAAHTAAIYA RAEL
Sbjct: 23  FLLGSALSNPPSLATAFSSSSSSSSAAAAVDMETHKTKVCIVGSGPAAHTAAIYASRAEL 82

Query: 409 EPILFEGWMAAGIAPGGQLTTTSFVENFPGFVEPIMXYELTGQFRARA 552
           +P+LFEGWMA  IAPGGQLTTT+ VENFPGF E I+  ++  +FR ++
Sbjct: 83  KPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGIDIVEKFRKQS 130



EST assemble image


clone accession position
1 LCL047e01_r AV628812 1 245
2 CM021a12_r AV387919 34 603




Chlamydomonas reinhardtii
Kazusa DNA Research Institute