KCC001139A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001139A_C01 KCC001139A_c01
CTACAGTTTTCGCCCAATTGTTCTGTCGGCCGACTCGGAATACGCCAGCTTTTAATAGAA
CTTTTGTCCTTGAACCAACCGGGTCCGCAGCATCTCCACAATGGTTGGCTCCCGGACCCC
CGGACATTCAAGCAGGAGCATTCCCTAGATAAGCGGAAAGCGGAGGCCGCACGCATCAAG
GAGAAGTACCCAGACCGAATTCCAGTCATTGTCGAGAAGGCAGAGCGCAGCGATATCCCC
GATATCGACAAGAAGAAGTACCTGGTGCCTTCAGACCTGACCGTCGGGCAATTTGTGTAC
GTCATCCGCAAGCGGATAAAGCTGAGCCCCGAGAAGGCCATCTTCATTTTCGTGAAGAAC
GTGCTTCCCCCGACTGCCGCGCTCATGTCATCCATCTATGAGGACCACAAGGATGAGGAC
GGCTTTCTGTACATCACCTACAGCGGCGAGAACACGTTCGGTGCCGGGGAGCAGCTGCAG
CTGCCTGTGGAGGAGCTGGCGTTGTGAGGGGAGCGGTTGTGCCCGACAGAGGGAGTTACT
GAAGTAGCGTGGGGGCATGCAGCGGGAGCGCTGCGCGTGAAAGGGTAAAAGGCTGGGCCT
TG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001139A_C01 KCC001139A_c01
         (602 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM64870.1| putative microtubule-associated protein [Arabidop...   206  2e-52
ref|NP_178631.1| microtubule-associated protein -related [Arabid...   205  4e-52
sp|P87068|SYRP_LACBI SYMBIOSIS-RELATED PROTEIN                        201  9e-51
emb|CAD33929.1| microtubule associated protein [Cicer arietinum]      201  9e-51
ref|NP_567504.1| symbiosis-related like protein [Arabidopsis tha...   201  9e-51

>gb|AAM64870.1| putative microtubule-associated protein [Arabidopsis thaliana]
          Length = 120

 Score =  206 bits (525), Expect = 2e-52
 Identities = 96/113 (84%), Positives = 111/113 (97%)
 Frame = +1

Query: 124 TFKQEHSLDKRKAEAARIKEKYPDRIPVIVEKAERSDIPDIDKKKYLVPSDLTVGQFVYV 303
           +FK EH L+KR+AEAARI+EKYPDRIPVIVE+AE+SD+PDIDKKKYLVP+DLTVGQFVYV
Sbjct: 5   SFKHEHPLEKRQAEAARIREKYPDRIPVIVERAEKSDVPDIDKKKYLVPADLTVGQFVYV 64

Query: 304 IRKRIKLSPEKAIFIFVKNVLPPTAALMSSIYEDHKDEDGFLYITYSGENTFG 462
           +RKRIKLSPEKAIFIFVKN+LPPTAA+MS+IYE+HKDEDGFLY++YSGENTFG
Sbjct: 65  VRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFG 117

>ref|NP_178631.1| microtubule-associated protein -related [Arabidopsis thaliana]
           gi|25310913|pir||H84470 probable microtubule-associated
           protein [imported] - Arabidopsis thaliana
           gi|4581162|gb|AAD24645.1| putative
           microtubule-associated protein [Arabidopsis thaliana]
           gi|19912157|dbj|BAB88390.1| autophagy 8d [Arabidopsis
           thaliana] gi|27765068|gb|AAO23655.1| At2g05630
           [Arabidopsis thaliana]
          Length = 120

 Score =  205 bits (522), Expect = 4e-52
 Identities = 95/113 (84%), Positives = 111/113 (98%)
 Frame = +1

Query: 124 TFKQEHSLDKRKAEAARIKEKYPDRIPVIVEKAERSDIPDIDKKKYLVPSDLTVGQFVYV 303
           +FK EH L+KR+AEAARI+EKYPDRIPVIVE+AE+SD+PDID+KKYLVP+DLTVGQFVYV
Sbjct: 5   SFKHEHPLEKRQAEAARIREKYPDRIPVIVERAEKSDVPDIDRKKYLVPADLTVGQFVYV 64

Query: 304 IRKRIKLSPEKAIFIFVKNVLPPTAALMSSIYEDHKDEDGFLYITYSGENTFG 462
           +RKRIKLSPEKAIFIFVKN+LPPTAA+MS+IYE+HKDEDGFLY++YSGENTFG
Sbjct: 65  VRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFG 117

>sp|P87068|SYRP_LACBI SYMBIOSIS-RELATED PROTEIN
          Length = 184

 Score =  201 bits (510), Expect = 9e-51
 Identities = 96/124 (77%), Positives = 111/124 (89%)
 Frame = +1

Query: 127 FKQEHSLDKRKAEAARIKEKYPDRIPVIVEKAERSDIPDIDKKKYLVPSDLTVGQFVYVI 306
           FK EH  +KRKAEA RI++KYPDRIPVI EKA+R+DIP IDKKKYLVPSDLTVGQFVYVI
Sbjct: 5   FKDEHPFEKRKAEAERIRQKYPDRIPVICEKADRTDIPTIDKKKYLVPSDLTVGQFVYVI 64

Query: 307 RKRIKLSPEKAIFIFVKNVLPPTAALMSSIYEDHKDEDGFLYITYSGENTFGAGEQLQLP 486
           RKRIKL+PEKAIFIFV  VLPPTAALMS+IYE+HKDED FLY++YSGENTFG    ++LP
Sbjct: 65  RKRIKLAPEKAIFIFVDEVLPPTAALMSAIYEEHKDEDNFLYVSYSGENTFGQEGWVELP 124

Query: 487 VEEL 498
           V+++
Sbjct: 125 VDDM 128

>emb|CAD33929.1| microtubule associated protein [Cicer arietinum]
          Length = 121

 Score =  201 bits (510), Expect = 9e-51
 Identities = 97/112 (86%), Positives = 106/112 (94%)
 Frame = +1

Query: 127 FKQEHSLDKRKAEAARIKEKYPDRIPVIVEKAERSDIPDIDKKKYLVPSDLTVGQFVYVI 306
           FKQEH L+KR+AEAARI+EKYPDRIPVIVEKAERSDIP IDKKKYLVP+DLTVGQFVYVI
Sbjct: 6   FKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVI 65

Query: 307 RKRIKLSPEKAIFIFVKNVLPPTAALMSSIYEDHKDEDGFLYITYSGENTFG 462
           RKRIKLS EKAIFIFV NVLPPT A+MS+IY++ KDEDGFLY+TYSGENTFG
Sbjct: 66  RKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFG 117

>ref|NP_567504.1| symbiosis-related like protein [Arabidopsis thaliana]
           gi|30683686|ref|NP_849395.1| symbiosis-related like
           protein [Arabidopsis thaliana]
           gi|17979227|gb|AAL49930.1| AT4g16520/dl4285c
           [Arabidopsis thaliana] gi|19912161|dbj|BAB88392.1|
           autophagy 8f [Arabidopsis thaliana]
           gi|20147099|gb|AAM10266.1| AT4g16520/dl4285c
           [Arabidopsis thaliana]
          Length = 121

 Score =  201 bits (510), Expect = 9e-51
 Identities = 97/115 (84%), Positives = 107/115 (92%)
 Frame = +1

Query: 124 TFKQEHSLDKRKAEAARIKEKYPDRIPVIVEKAERSDIPDIDKKKYLVPSDLTVGQFVYV 303
           +FKQEH L+KR+AEAARI+EKYPDRIPVIVEKAE+SDIP IDKKKYLVP+DLTVGQFVYV
Sbjct: 5   SFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAEKSDIPTIDKKKYLVPADLTVGQFVYV 64

Query: 304 IRKRIKLSPEKAIFIFVKNVLPPTAALMSSIYEDHKDEDGFLYITYSGENTFGAG 468
           IRKRIKLS EKAIFIFV NVLPP  ALMSS+YE+ KD+DGFLY+TYSGENTFG G
Sbjct: 65  IRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFGFG 119



EST assemble image


clone accession position
1 MX041c07_r BP087681 1 458
2 HC057c10_r AV636272 6 579
3 MX044b01_r BP087815 89 424
4 LCL031c06_r AV627733 91 425
5 LC071c01_r AV623972 91 608
6 MX021f04_r BP086965 101 578
7 LCL021a06_r AV627095 101 378
8 CM020h07_r AV397464 101 698
9 LC067a05_r AV623667 101 611
10 HC075f04_r AV637633 101 577
11 MX052g12_r BP088150 101 447
12 LC040b04_r AV621721 111 651
13 HC046d08_r AV635444 127 496




Chlamydomonas reinhardtii
Kazusa DNA Research Institute