KCC001135A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001135A_C01 KCC001135A_c01
agaggtcagaggttaggattgggtgtgcaggcgtgatgtttcagtccatctggcagTCCG
CCACTACAGCGACTACGACGCAACCCCTGGATCTTGTTACCTAGCCGTGCAGTATGACCC
TTTCGCGGCACACAAGTGCCTAAGCGTGATAGCTGTAACCGCATGGATCGCACATAGGAC
CCCCCCATGACTACGGCCCATCTCAGTCGCCAACCTTCAAATGAATACCGACTCTCAAGA
AAGGTACCAACACGCACACCAGCTCCGATCCTCTCGCTCCACTATTCGGGCCCTGGACTA
TATACGCGCGTGGCCGTCTCCCAACACGATGCGCTTGGGCAGAGCCTTGCACACCTAGTC
TACTGCGGTACGATAGCTTCATCAAAATTGCACCGCGCCCGAATGCTT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001135A_C01 KCC001135A_c01
         (408 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00052906.1| hypothetical protein [Magnetospirillum magnet...    33  0.94
gb|AAO49317.1|AF481736_1 abdominal B [Sacculina carcini]               32  1.6
ref|XP_163219.1| hypothetical protein XP_163219 [Mus musculus]         32  2.1
ref|XP_094496.2| hypothetical protein XP_094496 [Homo sapiens]         32  2.7
gb|AAM09332.2| similar to Homo sapiens (Human). Dentin sialophos...    31  4.7

>ref|ZP_00052906.1| hypothetical protein [Magnetospirillum magnetotacticum]
          Length = 354

 Score = 33.1 bits (74), Expect = 0.94
 Identities = 25/75 (33%), Positives = 31/75 (41%)
 Frame = -2

Query: 245 TFLESRYSFEGWRLRWAVVMGGSYVRSMRLQLSRLGTCVPRKGHTARLGNKIQGLRRSRC 66
           T L   Y+ + WRL   V  G  Y+R M+   +  GT   R        N  QG+   R 
Sbjct: 216 TNLTGSYAIDRWRLSPKV--GVLYLREMQNAYNDTGTSTAR--------NAAQGINFGRA 265

Query: 65  SGGLPDGLKHHACTP 21
           SGGL  G      TP
Sbjct: 266 SGGLKTGYAFDGFTP 280

>gb|AAO49317.1|AF481736_1 abdominal B [Sacculina carcini]
          Length = 338

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 226 YRLSRKVPTRTPAPILSLHYSGPGLYTRVAVSQHDALGQS 345
           Y  S +VP   P+P  SLH++ P + T   +++  ALG S
Sbjct: 33  YDTSMRVPPLQPSPSTSLHHAVPSMATNSTMAKRAALGYS 72

>ref|XP_163219.1| hypothetical protein XP_163219 [Mus musculus]
          Length = 180

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
 Frame = +1

Query: 127 GTQVPKRDSCNRMDRT*DPPMTTAHLSRQPSNEYRLSRKVPTRTPAPILSLHYSGPGL-- 300
           G +V  R+SC R  R+  P      +  +P+   R   ++ TRTPA    L    PGL  
Sbjct: 72  GVRVDSRESCGRESRSLFPRAKDT-VPIRPAATLRAVAQLQTRTPAGTWHLTGPAPGLPA 130

Query: 301 --YTRVAVSQHDALGQSLAHLVYCGTIAS-SKLHRARML 408
               RV+ S    L + LA+     +I S ++  RAR +
Sbjct: 131 PHRMRVSCSTRQRLHRPLANATTDNSIGSRAEPRRARQI 169

>ref|XP_094496.2| hypothetical protein XP_094496 [Homo sapiens]
          Length = 117

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = +1

Query: 43  SPSGSPPLQRLRRNPWILLPSRAV*PFRGTQVPKRDSCNRMDRT*DPPMTTAHLSRQPSN 222
           SPS   P    +  PW L P +    F G ++ K+  C+        P + +H  ++ S+
Sbjct: 6   SPSHLTPSSASQNIPWYLRPFQFPPGFVGGRIKKKLHCSH-------PHSYSHFIKRKSS 58

Query: 223 EYRLSRKVPTRTP 261
              L  K+P  TP
Sbjct: 59  LEPLQNKIPATTP 71

>gb|AAM09332.2| similar to Homo sapiens (Human). Dentin sialophosphoprotein
           precursor [Contains: Dentin phosphoprotein (Dentin
           phosphophoryn) (DPP); Dentin sialoprotein (DSP)]
           [Dictyostelium discoideum]
          Length = 1140

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 15/32 (46%), Positives = 19/32 (58%)
 Frame = +1

Query: 181 PPMTTAHLSRQPSNEYRLSRKVPTRTPAPILS 276
           P  TT+ LS   SN  + +   PT TPAPIL+
Sbjct: 892 PKNTTSSLSSSSSNISKSTNSTPTPTPAPILT 923



EST assemble image


clone accession position
1 HC070h05_r AV637267 1 408
2 CM020f02_r AV397512 57 497




Chlamydomonas reinhardtii
Kazusa DNA Research Institute