KCC001133A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001133A_C01 KCC001133A_c01
CTGATATACTGCATAGCCCTGCACTCACACTCGGCACACTACGGCCGAGCTGGGGTATTT
CCGCGAGTGGGATCTCTAGGCGCGACTCCTTTTGTGACGAACCTGTCATTCTAAAAGCAC
CACAAGGACTCGTAGCGCTCTGCAGTAATGCCCCCTCGGGCTCAGGACATGGAGGAGGAT
GAGGAGGTCAAGTTTGAGACCTCAAAGGGCGTCAAGGTGTACAACACCTTTGACGCCATG
GGTCTGAAGGAGGAGCTGCTTCGCGGACTGTATGCGTATGGGTTTGAGAAGCCATCCGCC
ATCCAACAGCGTGCAGTGCTGCCCATCGTGCAAGGTCGCGACGTCATTGCGCAGGCGCAG
TCGGGCACGGGTAAATCATCCATGATTTCCGTGTCGACGTGCCAGCTGGTGGACGTGCAG
CAGCGCGAGTGCCAGGTCCTAATTCTGTCACCCACTCGTGAGCTGGCGCAGCAGACTGAG
AAGGTTATCCTGGCCGTGGGTGACTTCATGAACATTCAGGCGCATGCTTGCGTCGGTGGC
AAGAGCCTGTGTGAGGACATCCGCAAGCTGGAGAACGGCGTTCACGTGGTGTCGGGCACG
CCCGGCCGTGTGTTCGATATGATCCAGCGCCGAAACCTGCGCACGCGCCACATCAAGACG
CTGATCCTGGATGAGGCGGATGAGATGCTGGCCAAGAACTTCAAGGACCAGATCTACGAC
ATCTACCGGTACCTGCCGCCCGAGACCCAGGTGGTACTGGTGAGCGCCACGCTGCCGGCG
GAGGTGCTGGAGATGACCAACAAGTTCATGACGGACCCCATCCGCGTGCTCGTCAAGCGT
GATGAGCTGACGCTCGAGGGAATCAAGCAATTCTTCGTGGCAGTGGAGCGGGAGGAGTGG
AAGTTTGACACCCTGTGCGACCTGTACGACACGCTGACCATCACCCAGGCTGTCATCTTC
TGCAACACCAAGCGGAAGGTGGACTGGCTGACGGAGAAGATGCGGCAAAACAACTTCACG
GTGGCGTCCATGCACGGAGACATGGTGCAGAAGGAGCGCGAAGCCATCATGGGGGAGTTC
CGCTCCGGCGCCGCGCGTGTGCTCATCACGACCGACGTGTGGGCTCGCGGTCTGGACGTG
CAGCAGGTGTCGCTGGTCATCAACTACGACCTGCCCAACAACCGTGAGCTGTACATCCAC
CGCATTGGCCGCTCCGGACGCTTCGGCCGCAAGGGTGTGGCCATCAACTTCGTGCGCAAC
GACGACATCCGCATCCTGCGCGACATTGAGCAGTATTACTCCACACAGATTGATGAGATG
CCAATGAACGTGGCCGAGCTCATCTGAGGGGGTTTTTGACCTTTTGACTTACCTACACCT
TTTCGTGCTCGTTTTTTTGCTGAGGAGTGCTCAGAGTGCTCAGGGCTGTGCGGTGGCAGC
CAGATGCAAGTTCTGCAACGGTGGGGTAGCGAGGAGAGTGGCTTACAGGCAGCGCAGTTG
TGATGCGTGGTCGGGCTTGGGCAGGGGTTCGATATACCACCGTACTTAAGGGCAAAGCGG
CCGGCGGAAGGATACGACGGCAGGCGAGTAGCAGTTGGCGTCCCGGTTGTGTGTTTGTGG
CGGCCTGTCGTTGAAGGCGTCGTTTGGACTGGCTTGGCAGACTCGAAAGTGAACAGGTAT
ATGGCGATTACGGCCCTCGTGTATGCCTGTGGAAGAGTTTGATAGCCCGTGAGCGGTTAC
GCCCTGGTTCTGCCCTGCTCCCGTTCACGGTCTCATGGCCAGCATACCCACCCTCATCCG
CCCCAGTTAAGTTGTCCTTTCCTACGTCAGGGGTTGCATCTTCGGTGAGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001133A_C01 KCC001133A_c01
         (1851 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK50586.1|AC084404_11 putative translation initiation factor...   665  0.0
sp|P41380|IF43_NICPL Eukaryotic initiation factor 4A-3 (eIF4A-3)...   650  0.0
gb|AAH45939.1| Unknown (protein for MGC:56139) [Danio rerio]          640  0.0
ref|XP_312776.1| ENSANGP00000020417 [Anopheles gambiae] gi|30177...   638  0.0
ref|NP_619610.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48 [Mus ...   636  0.0

>gb|AAK50586.1|AC084404_11 putative translation initiation factor [Oryza sativa]
          Length = 404

 Score =  665 bits (1716), Expect = 0.0
 Identities = 327/402 (81%), Positives = 365/402 (90%)
 Frame = +1

Query: 139  SAVMPPRAQDMEEDEEVKFETSKGVKVYNTFDAMGLKEELLRGLYAYGFEKPSAIQQRAV 318
            +A    R     +DE + FETS GV+V ++FD MG++E+LLRG+YAYGFEKPSAIQQRAV
Sbjct: 3    AATTSRRGPGAMDDENLTFETSPGVEVISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAV 62

Query: 319  LPIVQGRDVIAQAQSGTGKSSMISVSTCQLVDVQQRECQVLILSPTRELAQQTEKVILAV 498
            LPI+ GRDVIAQAQSGTGK+SMIS+S CQ+VD   RE Q LILSPTRELA QTE+V+LA+
Sbjct: 63   LPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAI 122

Query: 499  GDFMNIQAHACVGGKSLCEDIRKLENGVHVVSGTPGRVFDMIQRRNLRTRHIKTLILDEA 678
            GD++NIQ HAC+GGKS+ EDIRKLE+GVHVVSGTPGRV DMI+RR LRTR IK LILDEA
Sbjct: 123  GDYINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEA 182

Query: 679  DEMLAKNFKDQIYDIYRYLPPETQVVLVSATLPAEVLEMTNKFMTDPIRVLVKRDELTLE 858
            DEML + FKDQIYD+YRYLPPE QV L+SATLP E+LEMT+KFMTDP+R+LVKRDELTLE
Sbjct: 183  DEMLGRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTSKFMTDPVRILVKRDELTLE 242

Query: 859  GIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRQNNFTVASMHG 1038
            GIKQFFVAVE+EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTE+MR NNFTV++MHG
Sbjct: 243  GIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHG 302

Query: 1039 DMVQKEREAIMGEFRSGAARVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSG 1218
            DM QKER+AIMGEFRSGA RVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSG
Sbjct: 303  DMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSG 362

Query: 1219 RFGRKGVAINFVRNDDIRILRDIEQYYSTQIDEMPMNVAELI 1344
            RFGRKGVAINFV+ +DIRILRDIEQYYSTQIDEMPMNVA+LI
Sbjct: 363  RFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADLI 404

>sp|P41380|IF43_NICPL Eukaryotic initiation factor 4A-3 (eIF4A-3) (eIF-4A-3)
            gi|100276|pir||S22579 translation initiation factor
            eIF-4A - curled-leaved tobacco gi|19699|emb|CAA43514.1|
            nicotiana eukaryotic translation initiation factor 4A
            [Nicotiana plumbaginifolia]
          Length = 391

 Score =  650 bits (1677), Expect = 0.0
 Identities = 321/392 (81%), Positives = 360/392 (90%)
 Frame = +1

Query: 169  MEEDEEVKFETSKGVKVYNTFDAMGLKEELLRGLYAYGFEKPSAIQQRAVLPIVQGRDVI 348
            MEED  V FETSKGV+   +F  MG+K++LLRG+Y YGFEKPSAIQQRAVLPI+ GRDVI
Sbjct: 1    MEEDRLV-FETSKGVEPIASFAEMGIKDDLLRGVYQYGFEKPSAIQQRAVLPIISGRDVI 59

Query: 349  AQAQSGTGKSSMISVSTCQLVDVQQRECQVLILSPTRELAQQTEKVILAVGDFMNIQAHA 528
            AQAQSGTGK+SMI+++ CQ+VD +  E Q LILSPTRELA QTEKVILA+GD++N+QAHA
Sbjct: 60   AQAQSGTGKTSMIALTVCQIVDTKSSEVQALILSPTRELAAQTEKVILAIGDYINVQAHA 119

Query: 529  CVGGKSLCEDIRKLENGVHVVSGTPGRVFDMIQRRNLRTRHIKTLILDEADEMLAKNFKD 708
            C+GGKS+ EDIRKLE+GV VVSGTPGRV DMI+RR LRTR IK LILDE+DEML++ FKD
Sbjct: 120  CIGGKSVGEDIRKLEHGVQVVSGTPGRVCDMIKRRTLRTRGIKLLILDESDEMLSRGFKD 179

Query: 709  QIYDIYRYLPPETQVVLVSATLPAEVLEMTNKFMTDPIRVLVKRDELTLEGIKQFFVAVE 888
            QIYD+YRYLPPE QVVL+SATLP E+LE+T+KFMTDP+R+LVKRDELTLEGIKQFFVAVE
Sbjct: 180  QIYDVYRYLPPELQVVLISATLPNEILEITSKFMTDPVRILVKRDELTLEGIKQFFVAVE 239

Query: 889  REEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRQNNFTVASMHGDMVQKEREAI 1068
            +EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLT KMR+NNFTV+SMHGDM QKER+AI
Sbjct: 240  KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMRENNFTVSSMHGDMPQKERDAI 299

Query: 1069 MGEFRSGAARVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIN 1248
            M EFR G  RVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIN
Sbjct: 300  MAEFRGGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIN 359

Query: 1249 FVRNDDIRILRDIEQYYSTQIDEMPMNVAELI 1344
            FV++DDI+ILRDIEQYYSTQIDEMPMNVA+LI
Sbjct: 360  FVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 391

>gb|AAH45939.1| Unknown (protein for MGC:56139) [Danio rerio]
          Length = 406

 Score =  640 bits (1650), Expect = 0.0
 Identities = 315/404 (77%), Positives = 365/404 (89%), Gaps = 2/404 (0%)
 Frame = +1

Query: 139  SAVMPPRAQDMEEDE--EVKFETSKGVKVYNTFDAMGLKEELLRGLYAYGFEKPSAIQQR 312
            +AV+P R + ++E++  +++FETS+ V V  TFD MGL+E+LLRG+YAYGFEKPSAIQQR
Sbjct: 3    TAVVPVRKRILKEEDMTKIEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQR 62

Query: 313  AVLPIVQGRDVIAQAQSGTGKSSMISVSTCQLVDVQQRECQVLILSPTRELAQQTEKVIL 492
            A+  I++GRDVIAQ+QSGTGK++   VS  Q +D+Q RE Q LIL+PTRELA Q +KV+L
Sbjct: 63   AIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLL 122

Query: 493  AVGDFMNIQAHACVGGKSLCEDIRKLENGVHVVSGTPGRVFDMIQRRNLRTRHIKTLILD 672
            A+GD+MN+Q HAC+GG ++ EDIRKL+ G HVV+GTPGRVFDMI+RR+LRTR IK L+LD
Sbjct: 123  ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD 182

Query: 673  EADEMLAKNFKDQIYDIYRYLPPETQVVLVSATLPAEVLEMTNKFMTDPIRVLVKRDELT 852
            EADEML K FK+QIYD+YRYLPP TQV L+SATLP E+LEMTNKFMTDPIR+LVKRDELT
Sbjct: 183  EADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELT 242

Query: 853  LEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRQNNFTVASM 1032
            LEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR+ NFTV+SM
Sbjct: 243  LEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSM 302

Query: 1033 HGDMVQKEREAIMGEFRSGAARVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGR 1212
            HGDM QKERE+IM EFRSGA+RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGR
Sbjct: 303  HGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVSQVSLIINYDLPNNRELYIHRIGR 362

Query: 1213 SGRFGRKGVAINFVRNDDIRILRDIEQYYSTQIDEMPMNVAELI 1344
            SGR+GRKGVAINFV+NDDIRILRDIEQYYSTQIDEMPMNVA+LI
Sbjct: 363  SGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 406

>ref|XP_312776.1| ENSANGP00000020417 [Anopheles gambiae] gi|30177161|gb|EAA08469.2|
            ENSANGP00000020417 [Anopheles gambiae str. PEST]
          Length = 391

 Score =  638 bits (1645), Expect = 0.0
 Identities = 317/391 (81%), Positives = 355/391 (90%)
 Frame = +1

Query: 172  EEDEEVKFETSKGVKVYNTFDAMGLKEELLRGLYAYGFEKPSAIQQRAVLPIVQGRDVIA 351
            E+   V+FETS+ V+V  TF++MGL+EELLRG+YAYGFEKPSAIQQR++ PIV+GRDVIA
Sbjct: 1    EDLSNVEFETSEDVEVLPTFNSMGLREELLRGIYAYGFEKPSAIQQRSIQPIVKGRDVIA 60

Query: 352  QAQSGTGKSSMISVSTCQLVDVQQRECQVLILSPTRELAQQTEKVILAVGDFMNIQAHAC 531
            QAQSGTGK++  S+S  Q +D   RE QVL LSPTRELA Q +KVILA+GDFMN+Q HAC
Sbjct: 61   QAQSGTGKTATFSISILQSMDTTLRETQVLCLSPTRELAVQIQKVILALGDFMNVQCHAC 120

Query: 532  VGGKSLCEDIRKLENGVHVVSGTPGRVFDMIQRRNLRTRHIKTLILDEADEMLAKNFKDQ 711
            +GG +L EDIRKL+ G HVVSGTPGRVFDMI+RR LRTR IK L+LDEADEML K FK+Q
Sbjct: 121  IGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIKRRVLRTRSIKMLVLDEADEMLNKGFKEQ 180

Query: 712  IYDIYRYLPPETQVVLVSATLPAEVLEMTNKFMTDPIRVLVKRDELTLEGIKQFFVAVER 891
            IYD+YRYLPP TQVVL+SATLP E+LEMT+KFMTDPIR+LVKRDELTLEGIKQFFVAVER
Sbjct: 181  IYDVYRYLPPATQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVER 240

Query: 892  EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRQNNFTVASMHGDMVQKEREAIM 1071
            EEWKFDTLCDLYDTLTITQAVIFCNT+RKVDWLTEKMR+ NFTV+SMHGDM QKER+ IM
Sbjct: 241  EEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMREANFTVSSMHGDMPQKERDEIM 300

Query: 1072 GEFRSGAARVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF 1251
             EFRSG +RVLITTDVWARG+DVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF
Sbjct: 301  KEFRSGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF 360

Query: 1252 VRNDDIRILRDIEQYYSTQIDEMPMNVAELI 1344
            V++DDIRILRDIEQYYSTQIDEMPMNVA+LI
Sbjct: 361  VKSDDIRILRDIEQYYSTQIDEMPMNVADLI 391

>ref|NP_619610.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48 [Mus musculus]
            gi|14198152|gb|AAH08132.1| DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 48 [Mus musculus] gi|15277517|gb|AAH12862.1|
            DEAD (Asp-Glu-Ala-Asp) box polypeptide 48 [Mus musculus]
          Length = 411

 Score =  636 bits (1640), Expect = 0.0
 Identities = 313/391 (80%), Positives = 356/391 (90%)
 Frame = +1

Query: 172  EEDEEVKFETSKGVKVYNTFDAMGLKEELLRGLYAYGFEKPSAIQQRAVLPIVQGRDVIA 351
            E+  +V+FETS+ V V  TFD MGL+E+LLRG+YAYGFEKPSAIQQRA+  I++GRDVIA
Sbjct: 21   EDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIA 80

Query: 352  QAQSGTGKSSMISVSTCQLVDVQQRECQVLILSPTRELAQQTEKVILAVGDFMNIQAHAC 531
            Q+QSGTGK++  SVS  Q +D+Q RE Q LIL+PTRELA Q +K +LA+GD+MN+Q HAC
Sbjct: 81   QSQSGTGKTATFSVSVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHAC 140

Query: 532  VGGKSLCEDIRKLENGVHVVSGTPGRVFDMIQRRNLRTRHIKTLILDEADEMLAKNFKDQ 711
            +GG ++ EDIRKL+ G HVV+GTPGRVFDMI+RR+LRTR IK L+LDEADEML K FK+Q
Sbjct: 141  IGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQ 200

Query: 712  IYDIYRYLPPETQVVLVSATLPAEVLEMTNKFMTDPIRVLVKRDELTLEGIKQFFVAVER 891
            IYD+YRYLPP TQVVL+SATLP E+LEMTNKFMTDPIR+LVKRDELTLEGIKQFFVAVER
Sbjct: 201  IYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVER 260

Query: 892  EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRQNNFTVASMHGDMVQKEREAIM 1071
            EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR+ NFTV+SMHGDM QKERE+IM
Sbjct: 261  EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIM 320

Query: 1072 GEFRSGAARVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF 1251
             EFRSGA+RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINF
Sbjct: 321  KEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINF 380

Query: 1252 VRNDDIRILRDIEQYYSTQIDEMPMNVAELI 1344
            V+NDDIRILRDIEQYYSTQIDEMPMNVA+LI
Sbjct: 381  VKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411



EST assemble image


clone accession position
1 LCL018h07_r AV626961 1 477
2 MXL028h10_r BP094758 158 549
3 MXL028g11_r BP094753 158 546
4 LC037e09_r AV621542 158 696
5 LC010c11_r AV619581 164 668
6 HCL037h09_r AV641640 166 393
7 CM020d07_r AV397463 168 799
8 CM020d05_r AV397437 168 737
9 MX205e11_r BP089349 173 588
10 LC002c03_r AV618985 181 712
11 LCL080f03_r AV630551 220 632
12 MX256c06_r BP092582 272 796
13 LC036d03_r AV621454 341 823
14 LC060d11_r AV623209 407 811
15 LCL061a07_r AV629562 423 809
16 MX042e11_r BP087735 469 816
17 MX041f06_r BP087693 477 593
18 HC096e02_r AV639217 662 1092
19 LC058d11_r AV623064 662 1159
20 HC013f04_r AV632861 716 1154
21 MX207e10_r BP089450 778 1191
22 LCL089c08_r AV631130 892 1353
23 HC043d11_r AV635215 909 1455
24 CM075e01_r AV391588 1068 1645
25 LCL097c11_r AV631634 1392 1840
26 LCL063c04_r AV629668 1417 1841
27 MX035d12_r BP087482 1457 1690
28 LC006h11_r AV619339 1470 2009
29 MX056f10_r BP088297 1552 1889
30 CM037c12_r AV388907 1572 1986




Chlamydomonas reinhardtii
Kazusa DNA Research Institute