KCC001127A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001127A_C01 KCC001127A_c01
GTGTTCCAGGGTGTAACTCTTTGCAATCGCAACGGGTCGTGCACCCTCGAAGCGCACTTG
ACGTTGTGTTGACCTTCCGCGTCGACGTCAATCCTCCTCCTACCACAGCCGCGCACAGCT
GCTCGCTTGCTATCGGAAGACAGTGCTATCTGCAAATTCTTGGCTCCGTAACACGGCTAA
GTGCCCGTTGCTGGCCTCGCCACAATGAGCTCACCATCGCTGCACGAGGACTCGCTGCGT
CGTGATGCTCGGCGCGTCATCAGCGTGTTTGCTGGCTCGGCGGTCCCACCACCAGTGCTG
GATTACGTGTTTGCCAGTGTCACGCGGGTCTCCGCGGGCGCCCAGCGGAAGGGCCCTATC
AACGCCATGAGCCCACCGACGCCTCCGAAGTATACCTTGCGGCGGTGCGACAGTGGTCCT
CTGGGCGAGCCGTCTCTACTGGAGCTCGCGGCGGTGGGTCATCGGCGACGGAACAGTGGC
GAAGAGTTTGCGAGTGGGCCCCTGCAGTTCTCATGGAACGAGGCGTCACCTGCGACCAGC
CCGCCGCAGTCATCCAAGCGGCACTGAAGACACTTTGCAAGATATGGGCATTGACGTTTA
CAGGGCCGCAGCTGCCTGTCAATGCGCCTGAACAACAACCGCTTCGACACGCAAGGCCGA
CACCGTTACGGCGGCAGTGGCCTTGGCCTAGGCCAGCGCGCGCACCGCCGCGGTTA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001127A_C01 KCC001127A_c01
         (716 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAB84013.1| 8-oxoguanine DNA glycosylase [Homo sapiens]             37  0.31
dbj|BAC87253.1| unnamed protein product [Homo sapiens]                 37  0.40
ref|XP_300852.1| similar to angiomotin like 2 [Homo sapiens] gi|...    36  0.68
gb|AAC02666.1| polyprotein [Arabidopsis thaliana]                      35  0.89
gb|AAC02664.1| polyprotein [Arabidopsis thaliana]                      35  0.89

>gb|AAB84013.1| 8-oxoguanine DNA glycosylase [Homo sapiens]
          Length = 341

 Score = 37.0 bits (84), Expect = 0.31
 Identities = 21/63 (33%), Positives = 29/63 (45%)
 Frame = -2

Query: 607 GPVNVNAHILQSVFSAAWMTAAGWSQVTPRSMRTAGAHSQTLRHCSVADDPPPRAPVETA 428
           GP       L + F + W   AGW+Q TP S++     S  LR C  A +PP +    + 
Sbjct: 280 GPSPQTTKELGNFFRSLWGPYAGWAQATPPSLQV--LFSADLRQCRHAQEPPAKRRKGSK 337

Query: 427 RPE 419
            PE
Sbjct: 338 GPE 340

>dbj|BAC87253.1| unnamed protein product [Homo sapiens]
          Length = 197

 Score = 36.6 bits (83), Expect = 0.40
 Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 6/133 (4%)
 Frame = +2

Query: 17  LFAIATGRAPSKRT*RCVDLPRRRQSSSYHSRAQLLACYRKTVLSANSWLRNTAKCPLLA 196
           L A  +  +PS+ T       R R +SS   R+   +C+      A SW R       L+
Sbjct: 52  LSAARSSASPSRST---CTRSRSRPNSSSSRRSSRSSCWHSWSARAGSWPR-----AWLS 103

Query: 197 SPQ*AHHRCTRTRCVVM------LGASSACLLARRSHHQCWITCLPVSRGSPRAPSGRAL 358
           SP+ A   C+R R   M      L + S+C    R     W+    + +   R   GR  
Sbjct: 104 SPRRAAFCCSRKRTFSMKLAKRSLSSCSSCFSLLRVARNSWLRASAMEKS--RRSEGRRR 161

Query: 359 STP*AHRRLRSIP 397
             P   R LR +P
Sbjct: 162 RAPAPARGLRKLP 174

>ref|XP_300852.1| similar to angiomotin like 2 [Homo sapiens]
           gi|32484977|ref|NP_057285.3| angiomotin like 2; Leman
           coiled-coil protein; angiomotin-like protein 2 [Homo
           sapiens]
          Length = 780

 Score = 35.8 bits (81), Expect = 0.68
 Identities = 27/85 (31%), Positives = 39/85 (45%)
 Frame = -2

Query: 625 ALTGSCGPVNVNAHILQSVFSAAWMTAAGWSQVTPRSMRTAGAHSQTLRHCSVADDPPPR 446
           A+ GS  P    A  + SVF+AA     GW  ++    +TA A ++     + AD  P  
Sbjct: 657 AIQGSLRP----AKSVPSVFAAAAAGTQGWQGLSSSERQTADAPAR----LTTADRAPTE 708

Query: 445 APVETARPEDHCRTAARYTSEASVG 371
            PV TA P  H +  +R  S  + G
Sbjct: 709 EPVVTAPPAAHAKHGSRDGSTQTEG 733

>gb|AAC02666.1| polyprotein [Arabidopsis thaliana]
          Length = 1451

 Score = 35.4 bits (80), Expect = 0.89
 Identities = 37/124 (29%), Positives = 53/124 (41%), Gaps = 5/124 (4%)
 Frame = +1

Query: 208  SSPSLHEDS---LRRDARRVISVFAGSAVPPPVLDYVFASVTRVSAGAQRKGPINA--MS 372
            +SPS+   S   L +D R V       +VP        A  +  S  A  + P  +  +S
Sbjct: 756  TSPSVTPPSDPPLSQDTRPV-------SVPLLARPLTTAPPSSPSCSAPHRSPSQSENLS 808

Query: 373  PPTPPKYTLRRCDSGPLGEPSLLELAAVGHRRRNSGEEFASGPLQFSWNEASPATSPPQS 552
            PP P + +L    + P+  PSL E + VGH    +G   +S PL  S     P    PQS
Sbjct: 809  PPAPLQPSLSLSPTSPITSPSLSEESLVGH-NSETGPTGSSPPL--SPQPQRPQPQSPQS 865

Query: 553  SKRH 564
            +  H
Sbjct: 866  TSPH 869

>gb|AAC02664.1| polyprotein [Arabidopsis thaliana]
          Length = 1451

 Score = 35.4 bits (80), Expect = 0.89
 Identities = 37/124 (29%), Positives = 53/124 (41%), Gaps = 5/124 (4%)
 Frame = +1

Query: 208  SSPSLHEDS---LRRDARRVISVFAGSAVPPPVLDYVFASVTRVSAGAQRKGPINA--MS 372
            +SPS+   S   L +D R V       +VP        A  +  S  A  + P  +  +S
Sbjct: 756  TSPSVTPPSDPPLSQDTRPV-------SVPLLARPLTTAPPSSPSCSAPHRSPSQSENLS 808

Query: 373  PPTPPKYTLRRCDSGPLGEPSLLELAAVGHRRRNSGEEFASGPLQFSWNEASPATSPPQS 552
            PP P + +L    + P+  PSL E + VGH    +G   +S PL  S     P    PQS
Sbjct: 809  PPAPLQPSLSLSPTSPITSPSLSEESLVGH-NSETGPTGSSPPL--SPQPQRPQPQSPQS 865

Query: 553  SKRH 564
            +  H
Sbjct: 866  TSPH 869



EST assemble image


clone accession position
1 LC059b06_r AV623118 1 614
2 LC002d04_r AV618995 2 618
3 CM090d03_r AV392315 97 585
4 MX054f02_r BP088226 99 580
5 LCL002c08_r AV626094 102 474
6 CM020b05_r AV397474 103 717
7 LC067b11_r AV623678 105 635
8 MX243b02_r BP091714 111 573
9 MXL017g09_r BP094074 114 370
10 LC082c11_r AV624762 121 575
11 CM057f05_r AV390474 199 803
12 LC012f11_r AV619756 371 804
13 MX025f02_r BP087110 496 817




Chlamydomonas reinhardtii
Kazusa DNA Research Institute