KCC001123A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001123A_C01 KCC001123A_c01
gcacgaggcttcccgttgtcctttgtggtacattaatagcgCAGCTGCATATAGCCTGAG
CCTTGACGCCCTGTTTTGCAGACCGTTTCTTCCGACATAATTGCAAACTTGCACCAAGAA
AATGCACGCACAGTCTCTTCACGCTACCGCCACCAGGACAGCTACTAGTGCCAGGCATGT
GGCCCCGCATGCGCCGCGACGCACCGCTTCCGTTCGGTGCTGTGCAAGCATGCCGACGAG
CGGCGAGACTGCGCCGAGCCGGCGGCAGGCGCTAGCAAGCATTGCGCTCATGAGCTCTGG
TGCTATGCTGTCGAACTGCGCGCCCGCGAACGCGGCCCTGAAGGACTACTTGCTGCCAGG
CCCAGGACGAGGTGCTCGAGGTGTCGATGACCCTGGGCAGCACGGATGGCAAGTACATGT
TTTCGCCAAGCACCCTGGAGCTCACGCAGGGCAAGATTTACAAGCTCAAGCTGAACAACC
CCTCCTCCACCACCCACTACTTCACTGCCCTGGAGTTTGCCAGCAAGATTTACACGCTGC
TGGTCCTGGCGGGTGACCCGGTGGTGGAGGTGAGGGCGCATCTGGAGGTGGTCTCAGGCG
GCGCAGCGCCTCTGGTGTCTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001123A_C01 KCC001123A_c01
         (621 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_485063.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2...    63  3e-09
gb|AAF63032.1|AF120107_2 blue-copper-protein-like protein [Synec...    61  1e-08
ref|ZP_00111122.1| COG4454: Uncharacterized copper-binding prote...    59  4e-08
pir||T08153 cysteine proteinase (EC 3.4.22.-) - Volvox carteri f...    43  0.004
gb|AAA21791.1| gag-like protein                                        41  0.016

>ref|NP_485063.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25382907|pir||AI1933
           hypothetical protein all1020 [imported] - Nostoc sp.
           (strain PCC 7120) gi|17130366|dbj|BAB72977.1|
           ORF_ID:all1020~hypothetical protein [Nostoc sp. PCC
           7120]
          Length = 189

 Score = 63.2 bits (152), Expect = 3e-09
 Identities = 36/83 (43%), Positives = 49/83 (58%), Gaps = 1/83 (1%)
 Frame = +3

Query: 372 VLEVSMTLGSTDGKYMFSPSTLELTQGKIYKLKLNNPSSTTHYFTALEFASKIYTLLVLA 551
           V E++++LG++  +  F P+ LEL  GK Y L LNNPS   HYFTA +FA  I+T  V A
Sbjct: 76  VSEITVSLGNSANELKFEPNNLELVAGKRYLLHLNNPSQLKHYFTAKDFADGIWTQKVEA 135

Query: 552 GDPVVEVRAH-LEVVSGGAAPLV 617
           G   ++   H LE+  G  A  V
Sbjct: 136 GKVEIKGAIHELELKPGAEAEWV 158

>gb|AAF63032.1|AF120107_2 blue-copper-protein-like protein [Synechococcus sp. PCC 7002]
          Length = 154

 Score = 60.8 bits (146), Expect = 1e-08
 Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
 Frame = +3

Query: 360 AQDEVLEVSMTLGSTDGKYMFSPSTLELTQGKIYKLKLNNPSSTTHYFTALEFASKIYTL 539
           AQ  + E+ + LG+T G   F P  LE   G+ YKL L+NPS+  HYFTA +FA   +T 
Sbjct: 35  AQQPLQEMQIHLGTTSGALRFVPDQLEFVAGQRYKLLLDNPSNQKHYFTAKDFADTSWTQ 94

Query: 540 LVLAGDPVVEVRAH-LEVVSGGAA 608
            V AG   V+   H LE+  G  A
Sbjct: 95  KVEAGKVEVKGAIHELELKPGAIA 118

>ref|ZP_00111122.1| COG4454: Uncharacterized copper-binding protein [Nostoc
           punctiforme]
          Length = 174

 Score = 59.3 bits (142), Expect = 4e-08
 Identities = 33/81 (40%), Positives = 47/81 (57%), Gaps = 1/81 (1%)
 Frame = +3

Query: 378 EVSMTLGSTDGKYMFSPSTLELTQGKIYKLKLNNPSSTTHYFTALEFASKIYTLLVLAGD 557
           E++++LG+   +  F P+ LE   GK Y+L+L NPS   HYFTA +FA  I+T  V AG 
Sbjct: 63  EITISLGNLANELKFEPNHLEFEAGKRYQLRLTNPSQLKHYFTAKDFADGIWTQKVQAGK 122

Query: 558 PVVEVRAH-LEVVSGGAAPLV 617
             ++   H LE+  G  A  V
Sbjct: 123 VEIKGAIHELELKPGAEAEWV 143

>pir||T08153 cysteine proteinase (EC 3.4.22.-) - Volvox carteri f. nagariensis
           gi|3047415|gb|AAC13728.1| cysteine protease [Volvox
           carteri f. nagariensis]
          Length = 658

 Score = 42.7 bits (99), Expect = 0.004
 Identities = 26/85 (30%), Positives = 35/85 (40%), Gaps = 7/85 (8%)
 Frame = -1

Query: 591 PPPDAPSPPPPGHPPGPAACKSCWQTPGQ*SSGWWRRGCSA*ACKSCPA*APGCLA---K 421
           PPP +PSPP    PP P  C+         +S +W    +      C     GC     +
Sbjct: 453 PPPPSPSPPSSPPPPPPPTCQKS-------ASYYWNEATNPLGPNRCNPAGRGCECDGLR 505

Query: 420 TCTCHPCCPGSSTP----RAPRPGP 358
           TC+ +  C G S P    R+P P P
Sbjct: 506 TCSSYGWCQGISRPSPPLRSPPPSP 530

 Score = 41.2 bits (95), Expect = 0.012
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
 Frame = -1

Query: 594 RPPPDAPSPPPPGHPPGPAACKSCWQTPGQ*SSGWWRRGCSA*ACKSCPA*APGCLA--- 424
           RP P   SPPP   PP PAAC+         +S +W    +      C     GC     
Sbjct: 518 RPSPPLRSPPPS--PPPPAACQKS-------ASYYWNEATNPLGPNRCNPAGRGCECDGL 568

Query: 423 KTCTCHPCCPGSSTPRAPRP 364
           +TC+ +  C G S P +P P
Sbjct: 569 RTCSSYGWCQGISRPTSPPP 588

>gb|AAA21791.1| gag-like protein
          Length = 486

 Score = 40.8 bits (94), Expect = 0.016
 Identities = 35/131 (26%), Positives = 47/131 (35%), Gaps = 5/131 (3%)
 Frame = +1

Query: 136 SSRYRHQDSY*CQACGPACAATHRFRSVLCKHADERRDCAEPAAGASKHCAHE-----LW 300
           ++R+  QD   C  CG A     RF  V C   D++        G   HCA+      + 
Sbjct: 359 TARFCRQDDI-CARCGEAKHEGDRFGEVNCPSNDDKSLVYCKPCGKKGHCAYNRKECPIL 417

Query: 301 CYAVELRARERGPEGLLAARPRTRCSRCR*PWAARMASTCFRQAPWSSRRARFTSSS*TT 480
             A+   +          A  RT+  RC                 WS R+  +T  S  T
Sbjct: 418 RKAIAKASVAHAERPRAFAPARTQPERC-----------------WSRRQRLWTRVSCQT 460

Query: 481 PPPPPTTSLPW 513
           PPP P   LPW
Sbjct: 461 PPPAPVLLLPW 471



EST assemble image


clone accession position
1 CM020f08_r AV397444 1 575
2 CM019h09_r AV387327 42 637
3 LC043c09_r AV622056 48 584
4 LC009c11_r AV619511 48 589




Chlamydomonas reinhardtii
Kazusa DNA Research Institute