KCC001122A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001122A_C01 KCC001122A_c01
cgcgcccaagccgacggtcatcctcgtgattggtatggcgggctcgGGCAAGACGACGCT
CATCCAGCGCATCAACGCGCACCTGCACGCCACCAAACGACACGGCTACATCATCAACAT
GGACCCGGCCGTCGCCAGCCTGCCCTACGGTGCCAACATCGACATCCGCGACACGGTCAA
GTACAAGAACGTGATGAAGCAATACAACCTCGGGCCAAACGGCGGCATCCTCACCTCCTG
CAACCTCTTCGCAACGCGCTTCGACCAGGTGATCCAGTTGTGTGAGAAGCCGCGCGACCC
GCCCCTGGAATACATCGTGGTGGACACGCCTGGACAGATCGAGATCTTCACTTGGTCCGC
CAGCGGCGCCATCGTGACGGAGCTGTTCGCCAGCTCCTTCCCCACCCTGGTGGCGTACGT
GGTGGACACGCCGCGTGTCACCAACCCCCAGACATTCATGTCCAACATGCTGCAGGCCTG
CTCCATCCTGTACAAGACCAAGCTGCCCATGCTGCTGCTTTTCAACAAGGTGGACGTGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001122A_C01 KCC001122A_c01
         (540 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_193911.1| protein (fragment) -related [Arabidopsis thalia...   266  1e-70
gb|AAM66008.1| putative protein [Arabidopsis thaliana]                266  1e-70
pir||A85249 hypothetical protein AT4g21800 [imported] - Arabidop...   255  3e-67
pir||T05462 hypothetical protein T8O5.10 - Arabidopsis thaliana ...   255  3e-67
ref|XP_323860.1| hypothetical protein [Neurospora crassa] gi|289...   248  3e-65

>ref|NP_193911.1| protein (fragment) -related [Arabidopsis thaliana]
           gi|16930419|gb|AAL31895.1|AF419563_1
           AT4g21800/F17L22_260 [Arabidopsis thaliana]
           gi|23505917|gb|AAN28818.1| At4g21800/F17L22_260
           [Arabidopsis thaliana]
          Length = 379

 Score =  266 bits (680), Expect = 1e-70
 Identities = 126/177 (71%), Positives = 152/177 (85%)
 Frame = +2

Query: 8   KPTVILVIGMAGSGKTTLIQRINAHLHATKRHGYIINMDPAVASLPYGANIDIRDTVKYK 187
           KP +I+V+GMAGSGKT+ + R+  H   +K HGY++N+DPAV SLP+GANIDIRDTVKYK
Sbjct: 40  KPIIIIVVGMAGSGKTSFLHRLVCHTFDSKSHGYVVNLDPAVMSLPFGANIDIRDTVKYK 99

Query: 188 NVMKQYNLGPNGGILTSCNLFATRFDQVIQLCEKPRDPPLEYIVVDTPGQIEIFTWSASG 367
            VMKQYNLGPNGGILTS NLFAT+FD+V+ + EK  D  L+Y++VDTPGQIEIFTWSASG
Sbjct: 100 EVMKQYNLGPNGGILTSLNLFATKFDEVVSVIEKRAD-QLDYVLVDTPGQIEIFTWSASG 158

Query: 368 AIVTELFASSFPTLVAYVVDTPRVTNPQTFMSNMLQACSILYKTKLPMLLLFNKVDV 538
           AI+TE FAS+FPT+V YVVDTPR ++P TFMSNML ACSILYKT+LP++L FNK DV
Sbjct: 159 AIITEAFASTFPTVVTYVVDTPRSSSPITFMSNMLYACSILYKTRLPLVLAFNKTDV 215

>gb|AAM66008.1| putative protein [Arabidopsis thaliana]
          Length = 379

 Score =  266 bits (680), Expect = 1e-70
 Identities = 126/177 (71%), Positives = 152/177 (85%)
 Frame = +2

Query: 8   KPTVILVIGMAGSGKTTLIQRINAHLHATKRHGYIINMDPAVASLPYGANIDIRDTVKYK 187
           KP +I+V+GMAGSGKT+ + R+  H   +K HGY++N+DPAV SLP+GANIDIRDTVKYK
Sbjct: 40  KPIIIIVVGMAGSGKTSFLHRLVCHTFDSKSHGYVVNLDPAVMSLPFGANIDIRDTVKYK 99

Query: 188 NVMKQYNLGPNGGILTSCNLFATRFDQVIQLCEKPRDPPLEYIVVDTPGQIEIFTWSASG 367
            VMKQYNLGPNGGILTS NLFAT+FD+V+ + EK  D  L+Y++VDTPGQIEIFTWSASG
Sbjct: 100 EVMKQYNLGPNGGILTSLNLFATKFDEVVSVIEKRAD-QLDYVLVDTPGQIEIFTWSASG 158

Query: 368 AIVTELFASSFPTLVAYVVDTPRVTNPQTFMSNMLQACSILYKTKLPMLLLFNKVDV 538
           AI+TE FAS+FPT+V YVVDTPR ++P TFMSNML ACSILYKT+LP++L FNK DV
Sbjct: 159 AIITEAFASTFPTVVTYVVDTPRSSSPITFMSNMLYACSILYKTRLPLVLAFNKTDV 215

>pir||A85249 hypothetical protein AT4g21800 [imported] - Arabidopsis thaliana
           gi|4455288|emb|CAB36824.1| putative protein (fragment)
           [Arabidopsis thaliana] gi|7268977|emb|CAB81287.1|
           putative protein (fragment) [Arabidopsis thaliana]
          Length = 372

 Score =  255 bits (651), Expect = 3e-67
 Identities = 126/195 (64%), Positives = 152/195 (77%), Gaps = 18/195 (9%)
 Frame = +2

Query: 8   KPTVILVIGMAGSGKTTLIQRINAHLHATKRHGYIINMDPAVASLPYGANIDIRDTVKYK 187
           KP +I+V+GMAGSGKT+ + R+  H   +K HGY++N+DPAV SLP+GANIDIRDTVKYK
Sbjct: 15  KPIIIIVVGMAGSGKTSFLHRLVCHTFDSKSHGYVVNLDPAVMSLPFGANIDIRDTVKYK 74

Query: 188 NVMKQYNLGPNGGILTSCNLFATRFDQ------------------VIQLCEKPRDPPLEY 313
            VMKQYNLGPNGGILTS NLFAT+FD+                  V+ + EK  D  L+Y
Sbjct: 75  EVMKQYNLGPNGGILTSLNLFATKFDEVNIPLELVQMITDFFSHCVVSVIEKRAD-QLDY 133

Query: 314 IVVDTPGQIEIFTWSASGAIVTELFASSFPTLVAYVVDTPRVTNPQTFMSNMLQACSILY 493
           ++VDTPGQIEIFTWSASGAI+TE FAS+FPT+V YVVDTPR ++P TFMSNML ACSILY
Sbjct: 134 VLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSSSPITFMSNMLYACSILY 193

Query: 494 KTKLPMLLLFNKVDV 538
           KT+LP++L FNK DV
Sbjct: 194 KTRLPLVLAFNKTDV 208

>pir||T05462 hypothetical protein T8O5.10 - Arabidopsis thaliana  (fragment)
           gi|2894558|emb|CAA17147.1| putative protein [Arabidopsis
           thaliana]
          Length = 373

 Score =  255 bits (651), Expect = 3e-67
 Identities = 126/195 (64%), Positives = 152/195 (77%), Gaps = 18/195 (9%)
 Frame = +2

Query: 8   KPTVILVIGMAGSGKTTLIQRINAHLHATKRHGYIINMDPAVASLPYGANIDIRDTVKYK 187
           KP +I+V+GMAGSGKT+ + R+  H   +K HGY++N+DPAV SLP+GANIDIRDTVKYK
Sbjct: 16  KPIIIIVVGMAGSGKTSFLHRLVCHTFDSKSHGYVVNLDPAVMSLPFGANIDIRDTVKYK 75

Query: 188 NVMKQYNLGPNGGILTSCNLFATRFDQ------------------VIQLCEKPRDPPLEY 313
            VMKQYNLGPNGGILTS NLFAT+FD+                  V+ + EK  D  L+Y
Sbjct: 76  EVMKQYNLGPNGGILTSLNLFATKFDEVNIPLELVQMITDFFSHCVVSVIEKRAD-QLDY 134

Query: 314 IVVDTPGQIEIFTWSASGAIVTELFASSFPTLVAYVVDTPRVTNPQTFMSNMLQACSILY 493
           ++VDTPGQIEIFTWSASGAI+TE FAS+FPT+V YVVDTPR ++P TFMSNML ACSILY
Sbjct: 135 VLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSSSPITFMSNMLYACSILY 194

Query: 494 KTKLPMLLLFNKVDV 538
           KT+LP++L FNK DV
Sbjct: 195 KTRLPLVLAFNKTDV 209

>ref|XP_323860.1| hypothetical protein [Neurospora crassa] gi|28917999|gb|EAA27682.1|
           hypothetical protein [Neurospora crassa]
          Length = 399

 Score =  248 bits (634), Expect = 3e-65
 Identities = 122/187 (65%), Positives = 148/187 (78%), Gaps = 8/187 (4%)
 Frame = +2

Query: 2   APKPTVILVIGMAGSGKTTLIQRINAHLHATKRHGYIINMDPAVASLPYGANIDIRDTVK 181
           A +P  I+ +GMAGSGKTT +Q+INAHLH  K   Y+IN+DPAV   P+ +NIDIRD+V 
Sbjct: 12  ADQPVAIVCVGMAGSGKTTFMQQINAHLHGKKEPPYVINLDPAVTHSPFESNIDIRDSVN 71

Query: 182 YKNVMKQYNLGPNGGILTSCNLFATRFDQVIQLCE-----KPRDP---PLEYIVVDTPGQ 337
           YK VMKQYNLGPNGGILTS NLFAT+ DQV+ L E     KP DP   P+++I+VDTPGQ
Sbjct: 72  YKEVMKQYNLGPNGGILTSLNLFATKVDQVLGLLEKRTAPKPDDPTHTPIKHILVDTPGQ 131

Query: 338 IEIFTWSASGAIVTELFASSFPTLVAYVVDTPRVTNPQTFMSNMLQACSILYKTKLPMLL 517
           IE+F WSASG I+ E  ASSFPT++AY++DTPR ++  TFMSNML ACSILYKTKLPM+L
Sbjct: 132 IEVFVWSASGQILLESLASSFPTVIAYIIDTPRTSSTSTFMSNMLYACSILYKTKLPMIL 191

Query: 518 LFNKVDV 538
           +FNK DV
Sbjct: 192 VFNKSDV 198



EST assemble image


clone accession position
1 CM019h02_r AV387323 1 540
2 LC093b10_r AV625475 45 378




Chlamydomonas reinhardtii
Kazusa DNA Research Institute