KCC001121A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001121A_C01 KCC001121A_c01
cgcaaacagcttgaaccatgtctagcctcgttctgcaGCGCACTCATGCGCTCGGCCCGC
AGCGTTGCGGCGGCCAAACTGCGAGCCGACCTGGGCCACTCCCAATTGCTCCGCGAGCTT
GCTTCTCAGGAAACAGTCACTCTAAGTTTGAGAGGTCAACGCACCAAATAGGGCCTCAGG
TGTTGTGGCGCACGGAACGCAAATGCCCACACGTCTCGACGTCGGCGACGGCTACAGAAA
ATGTTGCCGATGATTTCGATGACGAAGATTCGGAGGATATCGGTCTAGGTGGCGGTGAGG
TGGAGGCAATCGACGAGTCGCAATTGGGGCCGCTGCCGGAGGTCCGCCACCAAGGCCCCA
TGCACATCAAGGACCGCAAGTAGTGGCGCGCCCGGGCGGAGGCTCTGGCCAAGGAGAAGA
AGCTCATCCGCGTGCAGGTGGGTCAGCTGGGCATCACGCCGGCCTTCCTGCGCGCCACGT
CCGACGTGCTGCAGAAGCACGGCCTGGTGCGGGTCAAGCTGGGCGCAGGCAGCGGCGTGG
AGCGAGCAACGCCGCCGACGTCTGGAGAGAATCTGGACGCCTGTGTGTGCCCCGATGGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001121A_C01 KCC001121A_c01
         (599 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_253669.1| probable two-component sensor [Pseudomonas aeru...    45  8e-04
sp|P50551|VASP_CANFA Vasodilator-stimulated phosphoprotein (VASP...    45  8e-04
emb|CAA67147.2| vasodilator-stimulated phosphoprotein [Homo sapi...    45  8e-04
ref|NP_003361.1| vasodilator-stimulated phosphoprotein [Homo sap...    45  8e-04
pir||A36068 major ampullate fibroin protein - orb spider (Nephil...    44  0.002

>ref|NP_253669.1| probable two-component sensor [Pseudomonas aeruginosa PA01]
           gi|11352390|pir||G83022 probable two-component sensor
           PA4982 [imported] - Pseudomonas aeruginosa (strain PAO1)
           gi|9951266|gb|AAG08367.1|AE004911_2 probable
           two-component sensor [Pseudomonas aeruginosa PAO1]
          Length = 998

 Score = 45.1 bits (105), Expect = 8e-04
 Identities = 31/74 (41%), Positives = 32/74 (42%), Gaps = 5/74 (6%)
 Frame = +2

Query: 386 ARPGGGSGQGEEAHPRAG-----GSAGHHAGLPARHVRRAAEARPGAGQAGRRQRRGASN 550
           A PG G+G GE A  RAG     G AG  A LPAR  RR      G   A  R R G   
Sbjct: 31  AGPGAGAGAGEAAVRRAGLPGRGGGAGQLAALPARRRRRTGRPDTGLPHARARSRPGVFR 90

Query: 551 AADVWRESGRLCVP 592
            A   R  G L  P
Sbjct: 91  RAGAARGGGDLLQP 104

>sp|P50551|VASP_CANFA Vasodilator-stimulated phosphoprotein (VASP) gi|1086289|pir||S51796
           vasodilator-stimulated phosphoprotein VASP - dog
           gi|624250|emb|CAA86522.1| vasodilator-stimulated
           phosphoprotein (VASP) [Canis familiaris]
          Length = 384

 Score = 45.1 bits (105), Expect = 8e-04
 Identities = 26/59 (44%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 486 RRTWRAGRPA*CPAD--PPARG*ASSPWPEPPPGRATTCGP*CAWGLGGGPPAAAPIAT 316
           RR   AG P   PA   PP  G    P P PPPG + + G     G GGGPP A P+ T
Sbjct: 157 RRVSNAGGPPAPPAGGPPPPPGPPPPPGPPPPPGVSLSGGSAAGHGAGGGPPPAPPLPT 215

>emb|CAA67147.2| vasodilator-stimulated phosphoprotein [Homo sapiens]
          Length = 378

 Score = 45.1 bits (105), Expect = 8e-04
 Identities = 27/63 (42%), Positives = 30/63 (46%), Gaps = 2/63 (3%)
 Frame = -3

Query: 486 RRTWRAGRPA*CPAD--PPARG*ASSPWPEPPPGRATTCGP*CAWGLGGGPPAAAPIATR 313
           RR   AG P   PA   PP  G    P P PPPG   +  P  A G GGGPP A P+   
Sbjct: 152 RRVSNAGGPPAPPAGGPPPPPGPPPPPGPPPPPGLPPSGVPAAAHGAGGGPPPAPPLPAA 211

Query: 312 RLP 304
           + P
Sbjct: 212 QGP 214

 Score = 32.0 bits (71), Expect = 6.8
 Identities = 28/92 (30%), Positives = 33/92 (35%)
 Frame = +2

Query: 320 AIGAAAGGPPPRPHAHQGPQVVARPGGGSGQGEEAHPRAGGSAGHHAGLPARHVRRAAEA 499
           A   A GGPPP P     P   A+  GG G G      A G A   AG   R V +  EA
Sbjct: 194 AAHGAGGGPPPAP-----PLPAAQGPGGGGAG------APGLAAAIAGAKLRKVSKQEEA 242

Query: 500 RPGAGQAGRRQRRGASNAADVWRESGRLCVPR 595
               G    +   G S    +  E   +   R
Sbjct: 243 --SGGPTAPKAESGRSGGGGLMEEMNAMLARR 272

>ref|NP_003361.1| vasodilator-stimulated phosphoprotein [Homo sapiens]
           gi|1718079|sp|P50552|VASP_HUMAN Vasodilator-stimulated
           phosphoprotein (VASP) gi|1085412|pir||S51797
           vasodilator-stimulated phosphoprotein - human
           gi|624964|emb|CAA86523.1| vasodilator-stimulated
           phosphoprotein (VASP) [Homo sapiens]
           gi|23398520|gb|AAH38224.1| Vasodilator-stimulated
           phosphoprotein [Homo sapiens]
          Length = 380

 Score = 45.1 bits (105), Expect = 8e-04
 Identities = 27/63 (42%), Positives = 30/63 (46%), Gaps = 2/63 (3%)
 Frame = -3

Query: 486 RRTWRAGRPA*CPAD--PPARG*ASSPWPEPPPGRATTCGP*CAWGLGGGPPAAAPIATR 313
           RR   AG P   PA   PP  G    P P PPPG   +  P  A G GGGPP A P+   
Sbjct: 154 RRVSNAGGPPAPPAGGPPPPPGPPPPPGPPPPPGLPPSGVPAAAHGAGGGPPPAPPLPAA 213

Query: 312 RLP 304
           + P
Sbjct: 214 QGP 216

 Score = 32.0 bits (71), Expect = 6.8
 Identities = 28/92 (30%), Positives = 33/92 (35%)
 Frame = +2

Query: 320 AIGAAAGGPPPRPHAHQGPQVVARPGGGSGQGEEAHPRAGGSAGHHAGLPARHVRRAAEA 499
           A   A GGPPP P     P   A+  GG G G      A G A   AG   R V +  EA
Sbjct: 196 AAHGAGGGPPPAP-----PLPAAQGPGGGGAG------APGLAAAIAGAKLRKVSKQEEA 244

Query: 500 RPGAGQAGRRQRRGASNAADVWRESGRLCVPR 595
               G    +   G S    +  E   +   R
Sbjct: 245 --SGGPTAPKAESGRSGGGGLMEEMNAMLARR 274

>pir||A36068 major ampullate fibroin protein - orb spider (Nephila clavipes)
           (fragment) gi|159712|gb|AAA29380.1| dragline silk
           fibroin
          Length = 718

 Score = 43.5 bits (101), Expect = 0.002
 Identities = 36/91 (39%), Positives = 42/91 (45%), Gaps = 6/91 (6%)
 Frame = +2

Query: 269 FGGYRSRWR*GGGNRRVAIGAAAGGPPPRPHAHQGPQVVARPG-GGSGQGEEAHPRAGGS 445
           +GG  S+    GG    A  AAAGG   R +   G Q   R G GG G G  A   AGG+
Sbjct: 387 YGGLGSQGAGRGGQGAGAAAAAAGGAGQRGYGGLGNQGAGRGGLGGQGAGAAAAAAAGGA 446

Query: 446 A-GHHAGL----PARHVRRAAEARPGAGQAG 523
             G + GL      R  + AA A  GAGQ G
Sbjct: 447 GQGGYGGLGNQGAGRGGQGAAAAAGGAGQGG 477

 Score = 40.8 bits (94), Expect = 0.015
 Identities = 35/92 (38%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
 Frame = +2

Query: 269 FGGYRSRWR*GGGNRRVAIGAAAGGPPPRPHAHQGPQVVARPG-GGSGQGEEAHPRAGGS 445
           +GG  S+    GG    A  AAAGG     +   G Q   R G GG G G  A   AGG+
Sbjct: 59  YGGLGSQGAGRGGQGAGAAAAAAGGAGQGGYGGLGSQGAGRGGLGGQGAGAAAAAAAGGA 118

Query: 446 A-GHHAGLPARHVRR-----AAEARPGAGQAG 523
             G + GL  +   R     AA A  GAGQ G
Sbjct: 119 GQGGYGGLGNQGAGRGGQGAAAAAAGGAGQGG 150

 Score = 37.4 bits (85), Expect = 0.16
 Identities = 32/95 (33%), Positives = 39/95 (40%), Gaps = 1/95 (1%)
 Frame = +2

Query: 269 FGGYRSRWR*GGGNRRVAIGAAAGGPPPRPHAHQGPQVVARPGGGSGQGEEAHPRAGGSA 448
           +GG  S+    GG    A  AAAGG     +   G Q V R GG  GQG  A    G   
Sbjct: 575 YGGLGSQGAGRGGQGAGAAAAAAGGAGQGGYGGLGGQGVGR-GGLGGQGAGAAAAGGAGQ 633

Query: 449 GHHAGL-PARHVRRAAEARPGAGQAGRRQRRGASN 550
           G + G+        AA +R  + QA  R     SN
Sbjct: 634 GGYGGVGSGASAASAAASRLSSPQASSRLSSAVSN 668

 Score = 35.4 bits (80), Expect = 0.62
 Identities = 26/74 (35%), Positives = 29/74 (39%)
 Frame = +2

Query: 299 GGGNRRVAIGAAAGGPPPRPHAHQGPQVVARPGGGSGQGEEAHPRAGGSAGHHAGLPARH 478
           G G    A  AAAGG     +   G Q   R  GG G G  A    G   G + GL  + 
Sbjct: 555 GAGQGAGAAAAAAGGVRQGGYGGLGSQGAGR--GGQGAGAAAAAAGGAGQGGYGGLGGQG 612

Query: 479 VRRAAEARPGAGQA 520
           V R      GAG A
Sbjct: 613 VGRGGLGGQGAGAA 626

 Score = 35.4 bits (80), Expect = 0.62
 Identities = 30/92 (32%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
 Frame = +2

Query: 272 GGYRSRWR*GGGNRR-VAIGAAAGGPPPRPHAHQGPQVVARPGGGSGQGEEAHPRAGGSA 448
           GGY      G G     A  AAAGG     +   G Q   R  GG G G  A    G   
Sbjct: 29  GGYGGLGGQGAGQGAGAAAAAAAGGAGQGGYGGLGSQGAGR--GGQGAGAAAAAAGGAGQ 86

Query: 449 GHHAGLPARHVRRAAEARPGAGQAGRRQRRGA 544
           G + GL ++   R      GAG A      GA
Sbjct: 87  GGYGGLGSQGAGRGGLGGQGAGAAAAAAAGGA 118

 Score = 33.1 bits (74), Expect = 3.1
 Identities = 31/102 (30%), Positives = 37/102 (35%), Gaps = 18/102 (17%)
 Frame = +2

Query: 272 GGYRSRWR*GGGNRRVAIGAAAGGPPPRPHAHQGPQVVARPGGGS--------GQGEEAH 427
           GGY      G G       AAAGG     +   G Q   R G G+        G G+E  
Sbjct: 449 GGYGGLGNQGAGRGGQGAAAAAGGAGQGGYGGLGSQGAGRGGQGAGAAAAAAVGAGQEGI 508

Query: 428 PRAGGSAGHHAGLPARHVRR----------AAEARPGAGQAG 523
              G   G + GL ++   R          AA A  GAGQ G
Sbjct: 509 RGQGAGQGGYGGLGSQGSGRGGLGGQGAGAAAAAAGGAGQGG 550

 Score = 33.1 bits (74), Expect = 3.1
 Identities = 29/79 (36%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
 Frame = +2

Query: 299 GGGNRRVAIGAAAGGPPPR----PHAHQGPQVVARPGGGSGQGEEAHPRAGGSAGHHAGL 466
           GG     A  AAAGG          A QG    A   GG+GQG       GG     AG 
Sbjct: 211 GGQGAGAAAAAAAGGAGQGGLGGQGAGQGAGASAAAAGGAGQG-----GYGGLGSQGAGR 265

Query: 467 PARHVRRAAEARPGAGQAG 523
                  AA A  GAGQ G
Sbjct: 266 GGEGAGAAAAAAGGAGQGG 284

 Score = 33.1 bits (74), Expect = 3.1
 Identities = 33/96 (34%), Positives = 39/96 (40%)
 Frame = +2

Query: 269 FGGYRSRWR*GGGNRRVAIGAAAGGPPPRPHAHQGPQVVARPGGGSGQGEEAHPRAGGSA 448
           +GG  S+    GG    A  AAAGG     +   G Q  A  GG  G G +   R GG  
Sbjct: 255 YGGLGSQGAGRGGEGAGAAAAAAGGAGQGGYGGLGGQ-GAGQGGYGGLGSQGAGR-GGLG 312

Query: 449 GHHAGLPARHVRRAAEARPGAGQAGRRQRRGASNAA 556
           G  AG  A         + G G  G  Q  GA+ AA
Sbjct: 313 GQGAGAAA----AGGAGQGGLGGQGAGQGAGAAAAA 344

 Score = 32.0 bits (71), Expect = 6.8
 Identities = 28/85 (32%), Positives = 32/85 (36%), Gaps = 10/85 (11%)
 Frame = +2

Query: 299 GGGNRRVAIGAAAGGPPPRPHAHQGPQVVARPGGGSGQGEEAHPRAGGSAGHHAGLPARH 478
           GG     A  AAAGG     +   G Q   R     GQG  A    G   G + GL ++ 
Sbjct: 103 GGQGAGAAAAAAAGGAGQGGYGGLGNQGAGR----GGQGAAAAAAGGAGQGGYGGLGSQG 158

Query: 479 VRR----------AAEARPGAGQAG 523
             R          AA A  GAGQ G
Sbjct: 159 AGRGGLGGQGAGAAAAAAGGAGQGG 183

 Score = 31.6 bits (70), Expect = 8.9
 Identities = 24/76 (31%), Positives = 29/76 (37%)
 Frame = +2

Query: 299 GGGNRRVAIGAAAGGPPPRPHAHQGPQVVARPGGGSGQGEEAHPRAGGSAGHHAGLPARH 478
           G G    A  AAAGG     +   G Q   R  GG G G  A    G   G + GL  + 
Sbjct: 235 GAGQGAGASAAAAGGAGQGGYGGLGSQGAGR--GGEGAGAAAAAAGGAGQGGYGGLGGQG 292

Query: 479 VRRAAEARPGAGQAGR 526
             +      G+  AGR
Sbjct: 293 AGQGGYGGLGSQGAGR 308



EST assemble image


clone accession position
1 HC070h09_r AV637271 1 416
2 CM019g09_r AV387354 31 599




Chlamydomonas reinhardtii
Kazusa DNA Research Institute