KCC001118A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001118A_C01 KCC001118A_c01
CATGGCGTTGGGTTTTACACGCGGCCCTAACTTCGGCTGTCGCCGTCTTTGACAGCCATC
AACTCTAAGCCGGGCAGCCTGATGACATGACCCTTGCACAATCCAAGCACCTGGCAGTCG
CAAGCGCGCGCTATATACACTGGACTCCGCTGTCCGTTACACCGCCGAGCCAGTTCACAC
GTTGCGGCGGCATCCTTGGCGGCATCCCCACTTTCATGTACCGTATGCATGAATGGCGTG
GAATGGCGCTTACTATGAGCGCAAACAGCAGCCATGTTCTGCCTTCATAGGCATGCCCAC
ATGCACATGCGCACACCGTGCCGCCAATGCAAAAGGCCAGCAGCCTAGCATACCTCAAAG
CCGCAGCACTGCCGCCTGCCAATCCAACCGCGTACGAGGACGGAGTTCACAGGAGGCTCA
TAGATGTTGGGTTGTATATTTTAAAAGTTTGATGAGTCATGCAAGTTGGACTAATCGTTC
TTCTTCTCGCCCGAGCCCTTGCTGGCGCCCACCATnGCCGACACGGGGCACTTGGATGCG
CCAGTGGTGGCGCGGCGTGCGCGATG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001118A_C01 KCC001118A_c01
         (566 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00106203.1| COG0656: Aldo/keto reductases, related to dik...    35  0.93
gb|AAO19365.1| unknown protein [Oryza sativa (japonica cultivar-...    35  0.93
gb|AAP58535.1| hypothetical protein [uncultured Acidobacteria ba...    33  2.1
pir||I48286 cytochrome-c oxidase (EC 1.9.3.1) chain VIIa precurs...    33  3.5
gb|AAO22131.1| quinone oxidoreductase [Fragaria x ananassa]            33  3.5

>ref|ZP_00106203.1| COG0656: Aldo/keto reductases, related to diketogulonate reductase
           [Nostoc punctiforme]
          Length = 338

 Score = 34.7 bits (78), Expect = 0.93
 Identities = 20/51 (39%), Positives = 25/51 (48%), Gaps = 2/51 (3%)
 Frame = +2

Query: 374 ACQSNRVRGRSSQEAHRCWVVYFKSLMSH--ASWTNRSSSRPSPCWRPPXP 520
           + QS       SQ++HR  +V FKS  SH  A W N     P  CW+P  P
Sbjct: 219 SAQSQLFNQLDSQDSHRPGIVTFKSTGSHTGALW-NPPQGLPENCWQPSVP 268

>gb|AAO19365.1| unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 398

 Score = 34.7 bits (78), Expect = 0.93
 Identities = 27/64 (42%), Positives = 30/64 (46%)
 Frame = +3

Query: 360 AAALPPANPTAYEDGVHRRLIDVGLYILKV**VMQVGLIVLLLARALAGAHHXRHGALGC 539
           AA  PP  P A  D + R L+D  L  LK         + LLLA AL  A    HGA   
Sbjct: 72  AAVEPPPKPRALLDAIKRSLLD-SLAALKK------PALALLLAGALLAAAGPHHGAALA 124

Query: 540 ASGG 551
           ASGG
Sbjct: 125 ASGG 128

>gb|AAP58535.1| hypothetical protein [uncultured Acidobacteria bacterium]
          Length = 608

 Score = 33.5 bits (75), Expect = 2.1
 Identities = 26/89 (29%), Positives = 34/89 (37%), Gaps = 4/89 (4%)
 Frame = -2

Query: 406 TPSSYAVGLAGGSAAALRYARLLAFCIGGTVCACACGHAYEGRTWLLFALIVS----AIP 239
           TP + A          +R AR LA   G      ACG  Y    +   A++ +    A P
Sbjct: 137 TPVAVACYWLVAPGTGVRPARNLAVTAGSLAAIAACGAGYG--IYAAGAVVANPAAFAFP 194

Query: 238 RHSCIRYMKVGMPPRMPPQRVNWLGGVTD 152
           R    RY        +PP    WLGG+ D
Sbjct: 195 RGDLFRYSAKWWGYFVPPAASPWLGGIAD 223

>pir||I48286 cytochrome-c oxidase (EC 1.9.3.1) chain VIIa precursor - mouse
           gi|50323|emb|CAA41396.1| cytochrome c oxidase subunit
           VIIa precursor [Mus musculus]
          Length = 83

 Score = 32.7 bits (73), Expect = 3.5
 Identities = 22/65 (33%), Positives = 30/65 (45%)
 Frame = -2

Query: 502 ARARARRRTISPTCMTHQTFKIYNPTSMSLL*TPSSYAVGLAGGSAAALRYARLLAFCIG 323
           A  +  +RTIS T   H   K+  P    L    +   V L GG++ AL Y   +A  +G
Sbjct: 7   ALRKIAQRTISTTSRRHFENKV--PEKQKLFQEDNGMPVHLKGGASNALLYRATMALTLG 64

Query: 322 GTVCA 308
           GT  A
Sbjct: 65  GTAYA 69

>gb|AAO22131.1| quinone oxidoreductase [Fragaria x ananassa]
          Length = 322

 Score = 32.7 bits (73), Expect = 3.5
 Identities = 22/59 (37%), Positives = 34/59 (57%)
 Frame = +3

Query: 333 KASSLAYLKAAALPPANPTAYEDGVHRRLIDVGLYILKV**VMQVGLIVLLLARALAGA 509
           K   L++++AA+LP A  TAYE G+ R  +  G  IL +     VG  ++ LA+ + GA
Sbjct: 132 KPKDLSFIEAASLPLAIETAYE-GLERAELSAGKSILVLGGAGGVGTHIIQLAKHVFGA 189



EST assemble image


clone accession position
1 HC071c07_r AV637296 1 455
2 LC032e06_r AV621192 5 527
3 CM019e09_r AV387337 39 604




Chlamydomonas reinhardtii
Kazusa DNA Research Institute