KCC001111A_c02
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001111A_C02 KCC001111A_c02
ccatagcaTAAAACACCTCTGGTGGCGATTCGTCATTTGCTGCGCAAGTCGATAGCACCA
AACCCCCGCAACAGGACCAGCGACTCGTCAGAAATAATGGACCTGAATTCTCGCGAGGAC
GGGCTCCGTAGGGCCATGTCCCTTGCCATCCCTATTGGAACCCAACTGGGTAGCGTGGGC
CTGGAGTCGGTAGCCAGGGCAACCGGGCTCGCCGCAGGCATTTGCCAGTGGAGCCTGGGT
TCGGCGCTCCGGACTGCCGGCGCCAGTGCCGCATTTGTCAACCGGAACGTCCTGTCGCCG
CTCAGCAGCTTCGCTTTTGGAGGCAGTAGTGCAATTTCGCCAAGTGGAGTGCGCTATTGC
ACGGCGGCCTGCCCGCAGCTGGTGCCGGAGCAGCGGTACCGCCCCTCCCGCACAGAACAG
AGGCTGCAGCGCGTGTCGAGCAGCCTGCGCTCGGGCAGCGCCAAGTGCTCCATCCGCAAG
CAGGCCGAGCAGGCGGCGACGCAACAGGAGCAGCAGCGCCAGCGCCAGAAGCAGCACATG
GAGCAGGCGCCCATCCTCATTGCCCATCTGGCGGCGCCATACTCCGTGTCATCGGAATTC
ATGCACGACACCGACGACCACCACCACCACTACAGCCACAACACCGCGCACTCGTCGGGA
AGCGACGTGGCCGTTTGGGCCGTCAACACGCTGGGCCTGCAGAGCTCCATGTTGTGAGAA
AACTTCGCGTGGATGTGGGGAAGAAGAGCTGCAGTAGCGCGTATCAAACAAGCGCCGCCG
CGACAGCTCACGAATGGAAGAGTTCAGCATTCGGCAGCTCATGGGGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001111A_C02 KCC001111A_c02
         (827 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_317879.1| ENSANGP00000004917 [Anopheles gambiae] gi|21300...    51  2e-05
gb|AAD42044.1|AF097183_1 unknown [Cryptosporidium parvum]              47  3e-04
ref|NP_494936.1| putative secreted or extracellular protein fami...    38  4e-04
ref|ZP_00095485.1| COG0442: Prolyl-tRNA synthetase [Novosphingob...    46  6e-04
ref|XP_309405.1| ENSANGP00000014893 [Anopheles gambiae] gi|21293...    46  6e-04

>ref|XP_317879.1| ENSANGP00000004917 [Anopheles gambiae] gi|21300834|gb|EAA12979.1|
           ENSANGP00000004917 [Anopheles gambiae str. PEST]
          Length = 257

 Score = 51.2 bits (121), Expect = 2e-05
 Identities = 59/204 (28%), Positives = 77/204 (36%), Gaps = 1/204 (0%)
 Frame = +2

Query: 185 SR*PGQPGSPQAFASGAWVRRSGLPAPVPHL-STGTSCRRSAASLLEAVVQFRQVECAIA 361
           SR P +P   +  A G   R +  P P P   +    C     S   A  +     C   
Sbjct: 34  SRTPARPPRTRPSAPGRIRRAAASPPPFPPAPARRRGCFSGDFSASAAPARCCPSSCCAR 93

Query: 362 RRPARSWCRSSGTAPPAQNRGCSACRAACARAAPSAPSASRPSRRRRNRSSSASARSSTW 541
           R  +  +C     A PA+ R     R  CA AAPS P+ +    R   RSS+ S +S T 
Sbjct: 94  RPRSPPFCFPPPAAAPAR-RAHRPPRCRCAPAAPSPPARAFGPWRSSTRSSARSPQSPTA 152

Query: 542 SRRPSSLPIWRRHTPCHRNSCTTPTTTTTTTATTPRTRREATWPFGPSTRWACRAPCCEK 721
                    WR   P  R  CT   + T  TA +  TR   T P G  TR +  APC   
Sbjct: 153 G--------WRSFAPTPRRPCTAADSGTRRTAAS-GTRCRGT-PSG--TRCSAPAPCAAS 200

Query: 722 TSRGCGEEELQ*RVSNKRRRDSSR 793
            +       +  R +    R SSR
Sbjct: 201 PA-SARSPPVSPRTARSASRPSSR 223

 Score = 42.4 bits (98), Expect = 0.009
 Identities = 37/103 (35%), Positives = 43/103 (40%)
 Frame = -2

Query: 658 PTSARCCGCSGGGGRRCRA*IPMTRSMAPPDGQ*GWAPAPCAASGAGAAAPVASPPARPA 479
           PT  R C  +  G RR  A    TR    P G    APAPCAAS A A +P  SP     
Sbjct: 159 PTPRRPCTAADSGTRRTAA--SGTRCRGTPSGTRCSAPAPCAASPASARSPPVSP----- 211

Query: 478 CGWSTWRCPSAGCSTRAAASVLCGRGGTAAPAPAAGRPPCNSA 350
               T R  S   S  A+A         A+P   + RPP  S+
Sbjct: 212 ---RTARSASRPSSRSASAP------SRASPRTCSCRPPPRSS 245

 Score = 41.6 bits (96), Expect = 0.016
 Identities = 45/124 (36%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
 Frame = -2

Query: 703 SAGPAC*RPKRPRRF---PTSARCCGCSGGGGRRCRA*IPMTRSMAPPDGQ*GWAPA--- 542
           SAGPA   P+RPR     PT  R    +  G  R  A  P TR  AP  G+   A A   
Sbjct: 6   SAGPAAWPPRRPRSSTDRPTPPR----TASGPSRTPARPPRTRPSAP--GRIRRAAASPP 59

Query: 541 ---PCAASGAGAAAPVASPPARPA-CGWSTWRCPSAGCSTRAAASVLCGRGGTAAPAPAA 374
              P  A   G  +   S  A PA C      CPS+ C+ R  +   C     AAPA  A
Sbjct: 60  PFPPAPARRRGCFSGDFSASAAPARC------CPSSCCARRPRSPPFCFPPPAAAPARRA 113

Query: 373 GRPP 362
            RPP
Sbjct: 114 HRPP 117

 Score = 35.0 bits (79), Expect = 1.5
 Identities = 34/91 (37%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
 Frame = +2

Query: 362 RRPARSWCRSSGTAPPAQNRGCSACRA--ACARAAPSAP----SASRPSRRRRNRSSSAS 523
           RR A S  R  GT    +    + C A  A AR+ P +P    SASRPS R      SAS
Sbjct: 173 RRTAASGTRCRGTPSGTRCSAPAPCAASPASARSPPVSPRTARSASRPSSR------SAS 226

Query: 524 ARSSTWSRRPSSLPIWRRHTPCHRNSCTTPT 616
           A S    R  S  P  R  T     SC+ P+
Sbjct: 227 APSRASPRTCSCRPPPRSSTVSRPASCSAPS 257

>gb|AAD42044.1|AF097183_1 unknown [Cryptosporidium parvum]
          Length = 984

 Score = 47.4 bits (111), Expect = 3e-04
 Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
 Frame = +2

Query: 398  TAPPAQNRGC-------SACRAA-CARAAPSAPSASRPSRRRRNRSSSASARSSTWSRRP 553
            TAP  +N GC       S C+ + C R  PS  + +R +     RS++ + R +T +R  
Sbjct: 766  TAPSCKNPGCKGTNCDGSKCKGSECVR--PSTTTTTRFTSTTTTRSTTTTTRPTTTTRPT 823

Query: 554  SSLPIWRRHTPCHRNSCTTPTTTTTTTATTPRTRREATWPFGPST 688
            ++  I  R T       TT T  TTTT TT  T R  T     ST
Sbjct: 824  TTTTITTRPTTTTTRPTTTTTRPTTTTTTTTTTTRYVTTSLRTST 868

>ref|NP_494936.1| putative secreted or extracellular protein family member precursor
           (2F356) [Caenorhabditis elegans] gi|7496569|pir||T15651
           hypothetical protein C27A2.5 - Caenorhabditis elegans
           gi|13592364|gb|AAK31463.1| Hypothetical protein C27A2.5
           [Caenorhabditis elegans]
          Length = 188

 Score = 37.7 bits (86), Expect(2) = 4e-04
 Identities = 21/60 (35%), Positives = 23/60 (38%)
 Frame = -1

Query: 551 GACSMCCFWRWRCCSCCVAACSACLRMEHLALPERRLLDTRCSLCSVREGRYRCSGTSCG 372
           G C  CC  R +CC CC   C+ C          R    TRC  C     R  C G  CG
Sbjct: 81  GGCGCCCC-RPKCCCCCRRCCTCC----------RTCCCTRCCTCC----RPCCCGCGCG 125

 Score = 28.5 bits (62), Expect(2) = 4e-04
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 643 CCGCSGGGGRRC 608
           CCGC GGGG  C
Sbjct: 72  CCGCGGGGGGGC 83

>ref|ZP_00095485.1| COG0442: Prolyl-tRNA synthetase [Novosphingobium aromaticivorans]
          Length = 666

 Score = 46.2 bits (108), Expect = 6e-04
 Identities = 38/126 (30%), Positives = 52/126 (41%), Gaps = 6/126 (4%)
 Frame = +2

Query: 368 PARSWCRSSGTAPPAQNRGC-SACRAACARAAPSAPSASRPSRRRRNRSSSASARSSTWS 544
           P  SW R    +  +    C S+ R    R  PS P+ S+P      R  S+ AR    +
Sbjct: 5   PRSSWKRKRRASRCSPRTSCASSSRCTAIRCRPSCPATSKPRWIISARIRSSCARRLRTA 64

Query: 545 RRPSSLPIWRRHT-----PCHRNSCTTPTTTTTTTATTPRTRREATWPFGPSTRWACRAP 709
             P+ LP W   T     P  + SC  P++ TT    +P  RR        ST  A R P
Sbjct: 65  LAPTRLPSWHSATWKCSRPPLQPSCPVPSSATT---PSPNRRRPTI-----STSCASRWP 116

Query: 710 CCEKTS 727
            C ++S
Sbjct: 117 RCRRSS 122

>ref|XP_309405.1| ENSANGP00000014893 [Anopheles gambiae] gi|21293182|gb|EAA05327.1|
           ENSANGP00000014893 [Anopheles gambiae str. PEST]
          Length = 319

 Score = 46.2 bits (108), Expect = 6e-04
 Identities = 50/186 (26%), Positives = 73/186 (38%), Gaps = 13/186 (6%)
 Frame = +2

Query: 197 GQPGSPQAFASGAWVRRSGLPAPVPHLSTGTSCRRSAASLLEAVVQFRQVECAIARRPAR 376
           G+ G   A A G    R   PA     S+ T+ R  +A+    +++    + A  +RPAR
Sbjct: 155 GRRGKGPARAPGPTASRGKRPAINATTSSATTAR--SANPYRVLLRRAMGKTARWQRPAR 212

Query: 377 SWCRSSGTAPPAQNRGCSACRAACARAAPSAPSASRPSR--RRRNRSSSASARSSTWSRR 550
           SW  S               RA C R+A     +  P+R  RR  R+     R++T   R
Sbjct: 213 SWRMS--------------IRALCNRSAMRRSGSGGPARAARRAARTVPHPVRAATRPAR 258

Query: 551 PSSLPIWRRHTPCHRNSCTTPTTTTTTTATTPRTRREATWPFG-----------PSTRWA 697
           P+ L +  R     R+      T  T   TTPR +R+  W                 RW+
Sbjct: 259 PTRLALRARPRTRIRS------TIRTKRRTTPRRKRKRRWSSSRPNRKSHAHRPTGRRWS 312

Query: 698 CRAPCC 715
            R+ CC
Sbjct: 313 YRSICC 318



EST assemble image


clone accession position
1 LCL090f06_r AV631234 1 434
2 LCL086h04_r AV630959 9 398
3 MX227g08_r BP090707 11 309
4 HCL081d06_r AV644078 16 464
5 CM018g06_r AV387262 33 454
6 LC079c12_r AV624554 38 495
7 HC029f09_r AV634132 224 733
8 MX035e01_r BP087483 482 827




Chlamydomonas reinhardtii
Kazusa DNA Research Institute