KCC001110A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001110A_C01 KCC001110A_c01
CACATCCCAAAATTACATTTGTCCAAGCGTCCACGAATCACGTCAAGCACAGTCAAAGTG
CCTCACTGCCCAGCCCGCCGCTGTCCTTGAAAATTGCGACAAGAGCCAGGCAACCTCCTC
GCGCACCACGCACCCCCCCCAGTAGTCACCTCGATAGTGCATCAGCTCCATGGGAAGAAG
CCTCAGTTTGCACCCGAAACCAGCTGCTCACCAACAAACCACTCACCCACACAAGGTCAC
ACGGCTGGGTCACACCTGCTGCCTCGTAACAAACGTCATGCGACACCACACCACACCACG
CGGCACGTACTACGGTCACACGTTTCCCGGCACACCCAGATCTCGGGGCCAAGCCCGTCA
ACAGCAGCGCCAGCGTCCTCCTCGCCAGGGCAGCCCTTGCGCAGGTCCCCTTCTTTCAGG
CCCTCCTGCTGCTCCCTGCCAGGGGCTGGCCAGTCGACACCATCACCACTAGGCGCTTCA
GTATCAGGCAAGCGCTTAGTTGGCCTCGCTCTGGATCTGCTCGCGCAGCACGGCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001110A_C01 KCC001110A_c01
         (535 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_567903.2| protein kinase family [Arabidopsis thaliana] gi...    42  0.005
ref|XP_330331.1| predicted protein [Neurospora crassa] gi|289222...    41  0.009
emb|CAD70732.1| related to hydroxyproline-rich glycoprotein prec...    41  0.009
sp|P23253|TCNA_TRYCR Sialidase (Neuraminidase) (NA) (Major surfa...    40  0.019
gb|EAA41718.1| GLP_554_10058_10771 [Giardia lamblia ATCC 50803]        40  0.025

>ref|NP_567903.2| protein kinase family [Arabidopsis thaliana] gi|7486419|pir||T04455
           hypothetical protein F4D11.90 - Arabidopsis thaliana
           gi|3063699|emb|CAA18590.1| putative protein [Arabidopsis
           thaliana] gi|7270175|emb|CAB79988.1| putative protein
           kinase [Arabidopsis thaliana]
          Length = 731

 Score = 42.0 bits (97), Expect = 0.005
 Identities = 42/165 (25%), Positives = 58/165 (34%), Gaps = 15/165 (9%)
 Frame = +1

Query: 19  LSKRPRITSSTVKVPHCPARRCP*K-LRQEPGNLLAHHAPPPVVTSIVHQLHGKKPQFAP 195
           L   P +++ T   P  P    P   +   P  LL    PPP+ +      H   P  +P
Sbjct: 50  LPSPPPLSAPTASPPPLPVESPPSPPIESPPPPLLESPPPPPLESPSPPSPHVSAPSGSP 109

Query: 196 ETSCSPTNHSPTQGHTAGSHLLPRNK----RHATPHHTTRHVLRSHV---SRHTQISGPS 354
                P   SP         + P N       + P  +T  V  +     S   + SGP 
Sbjct: 110 PLPFLPAKPSPPPSSPPSETVPPGNTISPPPRSLPSESTPPVNTASPPPPSPPRRRSGPK 169

Query: 355 PSTAAPASSSPGQPLRRSPSF-------RPSCCSLPGAGQSTPSP 468
           PS   P +SSP  P   +PS        +P   + P    STP P
Sbjct: 170 PSFPPPINSSPPNPSPNTPSLPETSPPPKPPLSTTPFPSSSTPPP 214

>ref|XP_330331.1| predicted protein [Neurospora crassa] gi|28922293|gb|EAA31535.1|
           predicted protein [Neurospora crassa]
          Length = 590

 Score = 41.2 bits (95), Expect = 0.009
 Identities = 37/138 (26%), Positives = 53/138 (37%), Gaps = 2/138 (1%)
 Frame = +1

Query: 61  PHCPARRCP*KLRQEPGNLLAHHAPPPVVTSIVHQLHGKKPQFAPETSCSPTNHSPTQGH 240
           PH P R  P   R        +H PP  +      L+       P T     + +  Q  
Sbjct: 337 PHSPPRPPPQSTRPTSLYFSGYHCPPTPI------LNTSNLPLTPPTQQGSFSPASPQSS 390

Query: 241 TAGSHLLPRNKRHATPHHTTRHVLR-SHVSRHTQISG-PSPSTAAPASSSPGQPLRRSPS 414
           TAG+H      RH+  +    +  R S  ++H   +  PSP+  +P+S  P  P   +PS
Sbjct: 391 TAGNH------RHSFSYFPAAYPPRPSPPTQHQPATTLPSPTITSPSSPFPSSPPAVNPS 444

Query: 415 FRPSCCSLPGAGQSTPSP 468
             PS  S P   Q    P
Sbjct: 445 APPSYPSTPAHQQQQAQP 462

>emb|CAD70732.1| related to hydroxyproline-rich glycoprotein precursor [Neurospora
           crassa]
          Length = 589

 Score = 41.2 bits (95), Expect = 0.009
 Identities = 37/138 (26%), Positives = 53/138 (37%), Gaps = 2/138 (1%)
 Frame = +1

Query: 61  PHCPARRCP*KLRQEPGNLLAHHAPPPVVTSIVHQLHGKKPQFAPETSCSPTNHSPTQGH 240
           PH P R  P   R        +H PP  +      L+       P T     + +  Q  
Sbjct: 337 PHSPPRPPPQSTRPTSLYFSGYHCPPTPI------LNTSNLPLTPPTQQGSFSPASPQSS 390

Query: 241 TAGSHLLPRNKRHATPHHTTRHVLR-SHVSRHTQISG-PSPSTAAPASSSPGQPLRRSPS 414
           TAG+H      RH+  +    +  R S  ++H   +  PSP+  +P+S  P  P   +PS
Sbjct: 391 TAGNH------RHSFSYFPAAYPPRPSPPTQHQPATTLPSPTITSPSSPFPSSPPAVNPS 444

Query: 415 FRPSCCSLPGAGQSTPSP 468
             PS  S P   Q    P
Sbjct: 445 APPSYPSTPAHQQQQAQP 462

>sp|P23253|TCNA_TRYCR Sialidase (Neuraminidase) (NA) (Major surface antigen)
            gi|84070|pir||JH0557 exo-alpha-sialidase (EC 3.2.1.18) -
            Trypanosoma cruzi gi|162303|gb|AAA30255.1| neuraminidase
          Length = 1162

 Score = 40.0 bits (92), Expect = 0.019
 Identities = 47/186 (25%), Positives = 67/186 (35%), Gaps = 13/186 (6%)
 Frame = +1

Query: 16   HLSKRPRITSSTVKVPHCPARRCP*KLRQEPGNLLAHHAPPPVVTSIVHQLHGKKPQFAP 195
            H +    + SS    P  PA          P +  AH  P     S  H          P
Sbjct: 969  HSTPSTPVDSSAHSTPSTPADSSAHSTPSTPADSSAHSTPSTPADSSAHS--------TP 1020

Query: 196  ETSCSPTNHS-PTQGHTAGSHLLPRNKRHATPHHTTRHVLRSHVSRHTQISGPSPSTAAP 372
             T    + HS P+    + +H  P     ++ H T    + S  S H+  S P+ S+A  
Sbjct: 1021 STPVDSSAHSTPSTPADSSAHGTPSTPADSSAHSTPSTPVDS--SAHSTPSTPADSSAHG 1078

Query: 373  ASSSPGQPLRRSPSFRPSCCSLPG--------AGQSTPS-PLGASVSGKRLV---GLALD 516
              S+P      S    P+  S  G        +  STPS P G+S +G  L+   G AL 
Sbjct: 1079 TPSTPADSSAHSTPSTPADSSAHGTPSTPADSSAHSTPSTPAGSSANGTVLILPDGAALS 1138

Query: 517  LLAQHG 534
              +  G
Sbjct: 1139 TFSGGG 1144

 Score = 33.1 bits (74), Expect = 2.3
 Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 5/156 (3%)
 Frame = +1

Query: 37   ITSSTVKVPHCPARRCP*KLRQEPGNLLAHHAPPPVVTSIVHQLHG----KKPQFAPETS 204
            + SS    P  PA          P +  AH  P   V S  H             AP T 
Sbjct: 640  VDSSAHGTPSTPADSSAHGTPSTPVDSSAHSTPSTPVDSSAHSTPSTPVDSSAHGAPSTP 699

Query: 205  CSPTNH-SPTQGHTAGSHLLPRNKRHATPHHTTRHVLRSHVSRHTQISGPSPSTAAPASS 381
               + H +P+    + +H  P     +TP  ++ H   S  +  +  S PS    + A S
Sbjct: 700  ADSSAHGTPSTPVDSSAHGTP-----STPADSSAHSTPSTPADSSAHSTPSTPADSSAHS 754

Query: 382  SPGQPLRRSPSFRPSCCSLPGAGQSTPSPLGASVSG 489
            +P  P+  S    PS  +   A  +  +P  +S  G
Sbjct: 755  TPSTPVDSSAHGTPSTPADSSAHSTPSTPADSSAHG 790

 Score = 32.7 bits (73), Expect = 3.1
 Identities = 37/152 (24%), Positives = 56/152 (36%), Gaps = 1/152 (0%)
 Frame = +1

Query: 37   ITSSTVKVPHCPARRCP*KLRQEPGNLLAHHAPPPVVTSIVHQLHGKKPQFAPETSCSPT 216
            + SS    P  P           P +  AH  P   V S  H          P T    +
Sbjct: 796  VDSSAHSTPSTPVDSSAHGTPSTPVDSSAHSTPSTPVDSSAHG--------TPSTPVDSS 847

Query: 217  NHS-PTQGHTAGSHLLPRNKRHATPHHTTRHVLRSHVSRHTQISGPSPSTAAPASSSPGQ 393
             HS P+    + +H  P     ++ H T    + S  S H+  S P+ S+A    S+P  
Sbjct: 848  AHSTPSTPADSSAHSTPSTPADSSAHGTPSTPVDS--SAHSTPSTPADSSA---HSTPST 902

Query: 394  PLRRSPSFRPSCCSLPGAGQSTPSPLGASVSG 489
            P+  S    PS  +   A  +  +P+ +S  G
Sbjct: 903  PVDSSAHSTPSTPADSSAHGTPSTPVDSSAHG 934

 Score = 32.3 bits (72), Expect = 4.0
 Identities = 35/145 (24%), Positives = 49/145 (33%), Gaps = 4/145 (2%)
 Frame = +1

Query: 43   SSTVKVPHCPARRCP*KLRQEPGNLLAHHAPPPVVTSIVHQLHGKKPQFAPETSCSPTNH 222
            SS    P  P           P +  AH  P   V S  H      P    ++S   T  
Sbjct: 870  SSAHGTPSTPVDSSAHSTPSTPADSSAHSTPSTPVDSSAHST----PSTPADSSAHGTPS 925

Query: 223  SPTQGHTAGSHLLPRNKRH----ATPHHTTRHVLRSHVSRHTQISGPSPSTAAPASSSPG 390
            +P      G+   P +       +TP  ++ H   S  +  +  S PS    + A S+P 
Sbjct: 926  TPVDSSAHGTPSTPADSSAHSTPSTPADSSAHSTPSTPADSSAHSTPSTPVDSSAHSTPS 985

Query: 391  QPLRRSPSFRPSCCSLPGAGQSTPS 465
             P   S    PS      +  STPS
Sbjct: 986  TPADSSAHSTPS-TPADSSAHSTPS 1009

 Score = 32.3 bits (72), Expect = 4.0
 Identities = 36/155 (23%), Positives = 52/155 (33%), Gaps = 12/155 (7%)
 Frame = +1

Query: 37   ITSSTVKVPHCPARRCP*KLRQEPGNLLAHHAPPPVVTSIVHQLHG--------KKPQFA 192
            + SS    P  PA          P +  AH  P   V S  H              P   
Sbjct: 844  VDSSAHSTPSTPADSSAHSTPSTPADSSAHGTPSTPVDSSAHSTPSTPADSSAHSTPSTP 903

Query: 193  PETSCSPTNHSPTQGHTAGSHLLPRNKRH----ATPHHTTRHVLRSHVSRHTQISGPSPS 360
             ++S   T  +P      G+   P +       +TP  ++ H   S  +  +  S PS  
Sbjct: 904  VDSSAHSTPSTPADSSAHGTPSTPVDSSAHGTPSTPADSSAHSTPSTPADSSAHSTPSTP 963

Query: 361  TAAPASSSPGQPLRRSPSFRPSCCSLPGAGQSTPS 465
              + A S+P  P+  S    PS      +  STPS
Sbjct: 964  ADSSAHSTPSTPVDSSAHSTPS-TPADSSAHSTPS 997

 Score = 32.3 bits (72), Expect = 4.0
 Identities = 36/147 (24%), Positives = 53/147 (35%), Gaps = 1/147 (0%)
 Frame = +1

Query: 43   SSTVKVPHCPARRCP*KLRQEPGNLLAHHAPPPVVTSIVHQLHGKKPQFAPETSCSPTNH 222
            SS    P  P           P +  AH  P   V S  H          P T    + H
Sbjct: 894  SSAHSTPSTPVDSSAHSTPSTPADSSAHGTPSTPVDSSAHG--------TPSTPADSSAH 945

Query: 223  S-PTQGHTAGSHLLPRNKRHATPHHTTRHVLRSHVSRHTQISGPSPSTAAPASSSPGQPL 399
            S P+    + +H  P     ++ H T    + S  S H+  S P+ S+A    S+P  P 
Sbjct: 946  STPSTPADSSAHSTPSTPADSSAHSTPSTPVDS--SAHSTPSTPADSSA---HSTPSTPA 1000

Query: 400  RRSPSFRPSCCSLPGAGQSTPSPLGAS 480
              S    PS  +   A  +  +P+ +S
Sbjct: 1001 DSSAHSTPSTPADSSAHSTPSTPVDSS 1027

 Score = 32.3 bits (72), Expect = 4.0
 Identities = 42/173 (24%), Positives = 61/173 (34%), Gaps = 15/173 (8%)
 Frame = +1

Query: 16   HLSKRPRITSSTVKVPHCPARRCP*KLRQEPGNLLAHHAPPPVVTSIVHQLHG----KKP 183
            H +    + SS    P  P           P +  AH  P   V S  H           
Sbjct: 669  HSTPSTPVDSSAHSTPSTPVDSSAHGAPSTPADSSAHGTPSTPVDSSAHGTPSTPADSSA 728

Query: 184  QFAPETSCSPTNHS-PTQGHTAGSHLLPRNKRHATPHHTTRHVLRSHVSRHTQISGPSPS 360
               P T    + HS P+    + +H  P     ++ H T      S  S H+  S P+ S
Sbjct: 729  HSTPSTPADSSAHSTPSTPADSSAHSTPSTPVDSSAHGTPSTPADS--SAHSTPSTPADS 786

Query: 361  TA---------APASSSPGQPLRRSPSFRPSCCSLPGAGQSTPS-PLGASVSG 489
            +A         + A S+P  P+  S    PS   +  +  STPS P+ +S  G
Sbjct: 787  SAHGTPSTPVDSSAHSTPSTPVDSSAHGTPS-TPVDSSAHSTPSTPVDSSAHG 838

>gb|EAA41718.1| GLP_554_10058_10771 [Giardia lamblia ATCC 50803]
          Length = 237

 Score = 39.7 bits (91), Expect = 0.025
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
 Frame = +1

Query: 178 KPQFAPETSCS--PTNHSPTQGHTAGSHLLPRNKRHATPHHTTRHVLRSHVSRHTQISGP 351
           +P  +  T+ S  P + SP +  ++G+  +PR  R  T H  +      H+ + +   G 
Sbjct: 124 RPGASSPTAASHPPPSSSPARARSSGTVSVPRLHRARTRHQRSLGAAPRHLQQTSGPWGA 183

Query: 352 SPSTAAPASSSPGQPLR--------RSPSFRPSCCSLPGAGQSTPSPLGA 477
           S S++AP +   G PLR         S +  PS    P A  STP P G+
Sbjct: 184 SSSSSAPFARPAGTPLRSPQTLCPLSSAALTPSAPLPPRASASTP-PAGS 232



EST assemble image


clone accession position
1 LC069f07_r AV623860 1 492
2 CM018g05_r AV387257 44 579
3 HC066h08_r AV636974 44 484
4 HC054f04_r AV636055 44 461
5 HCL051a07_r AV642392 163 538




Chlamydomonas reinhardtii
Kazusa DNA Research Institute