KCC001109A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001109A_C01 KCC001109A_c01
ttacaATCTGTGCACAATAGGAAGCATCGGGACCGACGCGCCATCACCGAAGACGCAGCT
TTACGCGTGAATCGGGACTCTGCCCGCAACACGCCCAAAGCCGTGACATTGCGACGGGAT
ACACTCTCTACATCGTGTTTCCAGATATTCCACATGGATAGGTAGAGTCACAGGACTGTG
AGAGAACACGGGCCGGCGCGGCGGGGGGGATGAGTCCGGGCCGATGGCTCCGGCAAGTCA
TCTGGTGGCTCCCCGCCGGCATCGCCATCACCGACACGGTCGTCAGCGTACTGCCGGTGG
AGGGCAGCTCGATGGCGCCCACGCTAAATCCGGACGGCGACGAGCAGTGGCCTGACATGG
TGCTGGTGGAGAAGGTGTCGTACAAATGGCTGCACAAGTACCAGCGCGGCGACGTAGCAG
TCTTCTGGGCTCCCGATGAGCCTCGTCAGCAGCTGGTGAAGCGCATCATCGCGTTGGAGC
ACGACCTGGTGTGGGACAGCGAGCAGCACAAGCCGCTCAGATACGCAGGGCGCGGTGGGT
TGGGGCGACATGCCGAGCGGGGACTCAGACTGTCGGCGGGCCCGGTTGTTGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001109A_C01 KCC001109A_c01
         (592 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_596133.1| putative mitochondrial inner membrane protease ...    65  7e-10
ref|NP_444352.2| inner mitochondrial membrane peptidase 2-like [...    61  1e-08
gb|AAK52906.1| inner mitochondrial membrane peptidase 2 [Mus mus...    61  1e-08
gb|AAH08497.1| IMMP2L protein [Homo sapiens]                           61  1e-08
ref|NP_187510.1| signal peptidase -related [Arabidopsis thaliana...    60  2e-08

>ref|NP_596133.1| putative mitochondrial inner membrane protease subunit
           [Schizosaccharomyces pombe] gi|7522506|pir||T40251
           probable mitochondrial inner membrane proteinase subunit
           - fission yeast (Schizosaccharomyces pombe)
           gi|6048302|emb|CAB58165.1| SPBC336.13c
           [Schizosaccharomyces pombe]
          Length = 180

 Score = 65.1 bits (157), Expect = 7e-10
 Identities = 31/82 (37%), Positives = 50/82 (60%)
 Frame = +3

Query: 246 WLPAGIAITDTVVSVLPVEGSSMAPTLNPDGDEQWPDMVLVEKVSYKWLHKYQRGDVAVF 425
           W+P  + +   VVSV  +EG SM P  NP+ +    D VL+    +KW   Y+RGDV + 
Sbjct: 25  WVPVLMFVEQHVVSVGTIEGRSMKPAFNPETNMLQRDRVLL----WKWNKDYKRGDVVIL 80

Query: 426 WAPDEPRQQLVKRIIALEHDLV 491
            +P+ P + LVKR++ +E+D++
Sbjct: 81  RSPENPEELLVKRVLGVEYDIM 102

>ref|NP_444352.2| inner mitochondrial membrane peptidase 2-like [Mus musculus]
           gi|26343411|dbj|BAC35362.1| unnamed protein product [Mus
           musculus]
          Length = 175

 Score = 61.2 bits (147), Expect = 1e-08
 Identities = 33/81 (40%), Positives = 48/81 (58%)
 Frame = +3

Query: 249 LPAGIAITDTVVSVLPVEGSSMAPTLNPDGDEQWPDMVLVEKVSYKWLHKYQRGDVAVFW 428
           +P  +   D V  V  VEGSSM P+LNP G +   D+VL+     +   + QRGD+    
Sbjct: 23  VPVAVTFLDRVACVARVEGSSMQPSLNPGGSQS-SDVVLLNHWKVRNF-EVQRGDIVSLV 80

Query: 429 APDEPRQQLVKRIIALEHDLV 491
           +P  P Q+++KR+IALE D+V
Sbjct: 81  SPKNPEQKIIKRVIALEGDIV 101

>gb|AAK52906.1| inner mitochondrial membrane peptidase 2 [Mus musculus]
          Length = 175

 Score = 61.2 bits (147), Expect = 1e-08
 Identities = 33/81 (40%), Positives = 48/81 (58%)
 Frame = +3

Query: 249 LPAGIAITDTVVSVLPVEGSSMAPTLNPDGDEQWPDMVLVEKVSYKWLHKYQRGDVAVFW 428
           +P  +   D V  V  VEGSSM P+LNP G +   D+VL+     +   + QRGD+    
Sbjct: 23  VPVAVTFLDRVACVARVEGSSMQPSLNPGGSQS-SDVVLLNHWKVRNF-EVQRGDIVSLV 80

Query: 429 APDEPRQQLVKRIIALEHDLV 491
           +P  P Q+++KR+IALE D+V
Sbjct: 81  SPKNPEQKIIKRVIALEGDIV 101

>gb|AAH08497.1| IMMP2L protein [Homo sapiens]
          Length = 110

 Score = 60.8 bits (146), Expect = 1e-08
 Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
 Frame = +3

Query: 249 LPAGIAITDTVVSVLPVEGSSMAPTLNPDGDEQWPDMVLVE--KVSYKWLHKYQRGDVAV 422
           +P  +   D V  V  VEG+SM P+LNP G +   D+VL+   KV    +H   RGD+  
Sbjct: 23  VPVAVTFLDRVACVARVEGASMQPSLNPGGSQS-SDVVLLNHWKVRNFEVH---RGDIVS 78

Query: 423 FWAPDEPRQQLVKRIIALEHDLVWDSEQHK 512
             +P  P Q+++KR+IALE D+V D  + K
Sbjct: 79  LVSPKNPEQKIIKRVIALEGDIVRDGRKLK 108

>ref|NP_187510.1| signal peptidase -related [Arabidopsis thaliana]
           gi|5923663|gb|AAD56314.1|AC009326_1 putative signal
           peptidase [Arabidopsis thaliana]
           gi|6403502|gb|AAF07842.1|AC010871_18 putative
           mitochondrial inner membrane protease subunit 2
           [Arabidopsis thaliana]
          Length = 154

 Score = 60.1 bits (144), Expect = 2e-08
 Identities = 34/88 (38%), Positives = 49/88 (55%)
 Frame = +3

Query: 258 GIAITDTVVSVLPVEGSSMAPTLNPDGDEQWPDMVLVEKVSYKWLHKYQRGDVAVFWAPD 437
           G+ I+D   SV+PV G SM+PT NP  +    D VLV+K   K  +K+ RGDV VF +P 
Sbjct: 21  GLTISDRCCSVVPVRGDSMSPTFNPQRNSYLDDYVLVDKFCLK-DYKFARGDVVVFSSPT 79

Query: 438 EPRQQLVKRIIALEHDLVWDSEQHKPLR 521
               + +KRI+ +  +  W S     +R
Sbjct: 80  HFGDRYIKRIVGMPGE--WISSSRDVIR 105



EST assemble image


clone accession position
1 CM027b07_r AV387632 1 593
2 CM018f09_r AV387270 5 529
3 HC028b04_r AV634014 6 508
4 LC029d05_r AV620971 20 505




Chlamydomonas reinhardtii
Kazusa DNA Research Institute