KCC001108A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001108A_C01 KCC001108A_c01
gcaccaggcagtccaagccataatcaagtgccaactgcgaatgagatgatgtgacttatt
ccaagcctgtgtaccttGTACTATTTGCCGGCCTGTCGGTACCATGATAATAGCGTTGAG
TGAAGCGTTAAATCTTTACGCGATGCAATTGTCGCTGTGATTGTCTCATGGAGTGGGAGA
CGCCCACGATGGCGCCCCGATGTTGCACAGGGTGACGGGGCGCACCATCGATGTGGTTTA
TTGACGGAGGGCAAGCAGTGACCCCTGAGATGAAGCGAGATGGTATTAGGCGTGAGACTG
AGCACGTCTGCCGGACAGTTTGTCGGATGTTATAGTATGTTCAGCGGGAGAGGGGTTAGG
AGGGTCAGGTGGCAATGTGCTGGAAAGAATGACACACGCGGGGATGACCACTTCACGGTC
CCTCGACGAGAGTTCATAGCGCTTGCTTTGAAAGAGTGTGAAGCAAAGGTGCAGATGAAC
CCGTAGGTTGCTGCGTTGGGCCGAGGATACCATACCATCGTTTTTGTCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001108A_C01 KCC001108A_c01
         (529 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAA92621.1| KIAA1383 protein [Homo sapiens]                        36  0.27
ref|NP_061963.1| KIAA1383 protein [Homo sapiens] gi|14286071|sp|...    36  0.27
gb|AAP05805.1| hypothetical protein [Oryza sativa (japonica cult...    36  0.27
ref|NP_198180.2| sterol desaturase domain-containing protein [Ar...    35  0.59
gb|AAH08995.1| 2610024N01Rik protein [Mus musculus]                    33  3.0

>dbj|BAA92621.1| KIAA1383 protein [Homo sapiens]
          Length = 907

 Score = 36.2 bits (82), Expect = 0.27
 Identities = 37/96 (38%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
 Frame = -3

Query: 377 HCHLTLLTPLPLNIL*HPTNCPADVLSLTPNTISLHLRGHC-LPSVNKPHRWCAPSPCAT 201
           HC L L TPL   +L  P   P      TP      L G C +      HR   P+    
Sbjct: 107 HCRL-LRTPLATLLLQLPPGRPTP----TPQ-----LLGACDISLATAAHRVVGPAASGC 156

Query: 200 SGRHRGRLPLHETI---TATIASRKDLT-LHSTLLS 105
           S RHRGR PLH  +   T  IA    LT L S LLS
Sbjct: 157 SHRHRGRFPLHNRVGERTGDIALAYRLTDLGSRLLS 192

>ref|NP_061963.1| KIAA1383 protein [Homo sapiens] gi|14286071|sp|Q9P2G4|YD83_HUMAN
           Hypothetical protein KIAA1383
           gi|13591501|emb|CAC36345.1| bA286F20.1 (KIAA1383
           protein) [Homo sapiens]
          Length = 905

 Score = 36.2 bits (82), Expect = 0.27
 Identities = 37/96 (38%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
 Frame = -3

Query: 377 HCHLTLLTPLPLNIL*HPTNCPADVLSLTPNTISLHLRGHC-LPSVNKPHRWCAPSPCAT 201
           HC L L TPL   +L  P   P      TP      L G C +      HR   P+    
Sbjct: 105 HCRL-LRTPLATLLLQLPPGRPTP----TPQ-----LLGACDISLATAAHRVVGPAASGC 154

Query: 200 SGRHRGRLPLHETI---TATIASRKDLT-LHSTLLS 105
           S RHRGR PLH  +   T  IA    LT L S LLS
Sbjct: 155 SHRHRGRFPLHNRVGERTGDIALAYRLTDLGSRLLS 190

>gb|AAP05805.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 481

 Score = 36.2 bits (82), Expect = 0.27
 Identities = 46/131 (35%), Positives = 62/131 (47%), Gaps = 19/131 (14%)
 Frame = -3

Query: 506 PRPNAATYGFICTFAS--HSFKASAMNSRRGTVKWSSPRVSFFP--AHCHLTLLTPLPLN 339
           P P AA    +C  A   H+  ASA +SR G +   SPR    P      L+L +P P++
Sbjct: 238 PYPTAAPLPALCQAAPRRHAAVASAASSRAGCLARDSPRRRRCPELPRAGLSLPSPPPVS 297

Query: 338 IL*HPTNCPA-DVLSLTPNTISLHLR-----GHCL--PSVNK--PHRWCA----PSPCAT 201
                T  P+  +LS+  ++  LH R     GH L  P VN+  P   CA    P+P  T
Sbjct: 298 ARAKTTPPPSFPLLSIAASSSLLHRRQVADPGHNLLAPVVNRLSPPLSCAAARSPTP-PT 356

Query: 200 SGRHRGR-LPL 171
           +  HR R LPL
Sbjct: 357 ASSHRSRWLPL 367

>ref|NP_198180.2| sterol desaturase domain-containing protein [Arabidopsis thaliana]
          Length = 339

 Score = 35.0 bits (79), Expect = 0.59
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = -2

Query: 507 SSAQRSNLRVHLHLC---FTLFQSKRYELSSRDREVVIPACVI-LSSTLPPDPPNPSPAE 340
           S A R +L  H H+    F LF S  Y   S D      + ++ + +T PP  P+PSP  
Sbjct: 111 SQAARVSLPSHHHVLLFYFMLFPSSSYTTGSTDLSTTTSSTLVTILTTTPPSSPSPSPVV 170

Query: 339 H 337
           H
Sbjct: 171 H 171

>gb|AAH08995.1| 2610024N01Rik protein [Mus musculus]
          Length = 697

 Score = 32.7 bits (73), Expect = 3.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 329 HPTNCPADVLSLTPNTISLHLRGHCLPSVNKPHRW 225
           HP  CP D L+L P    ++   HCL   ++P  W
Sbjct: 398 HPARCPKDTLALKP----MNCPAHCLMFAHRPRSW 428



EST assemble image


clone accession position
1 CM018e12_r AV387228 1 529
2 CM042g07_r AV389249 78 328




Chlamydomonas reinhardtii
Kazusa DNA Research Institute