KCC001104A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001104A_C01 KCC001104A_c01
gcaccagcctccCCCCGTCCTAAAGAAGAATTTATCATTGGCGCCAGCACTTGACCCCAG
GCCCTTAGCCGTTAGCTCACGAAGATGCGAGACGCCCAGGTCTTTGTGCGGTGCGGGGCG
CCGGTAGGCACCCTAGCAGTCATGTGCTCAGCTAAGGACACCGTTCAGTCTCTCAAGGAG
CAGCTAGCGGCCCGAAGCCCGGAGCTTGGCCCCTGCCGTTTCATGCGTCTGCAATATGGA
GGCGCGTCGCTGCCCGACGACCGCATGCTCGGCGATTTTTGCAGTCCCAGCGCCACGTTG
CAGCTCAGCTACCGGCTTCGCGGTGGCGGTGGCGACGGTGGCTCTACTGGGGCGGAGTCG
CGCTCCTGCTACCTGGAGATGTACGCGTACAAAAAGGTTGAGAAGGTCAACCCGGAAGAG
GCGCGGCTGGCCAAGTGGACCCGCTGCCACCTCTCCGGCGAGCTACTGGCTGCCCCCTGC
GTCGCCGACGAGCTGGGCAACCTGTACAACAAGGACGCGCTCATCGTGCGCCTCCTCGAC
AAGAAGCTGGCGCCCAGGCTCTCCACATCACGGGCTGCCTCCGTCGTGAGCGAATCCCCC
CGCGGTAA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001104A_C01 KCC001104A_c01
         (608 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB10993.1| gene_id:F2C19.3~ref|NP_057491.1~similar to unkno...   114  1e-24
ref|NP_200610.1| expressed protein [Arabidopsis thaliana] gi|343...   114  1e-24
ref|XP_215952.2| similar to 2410001C21Rik protein [Rattus norveg...    59  5e-08
gb|AAF17212.1|AF117231_1 protein x 0001 [Homo sapiens]                 59  5e-08
ref|NP_057491.1| chromosome 20 open reading frame 43 [Homo sapie...    59  5e-08

>dbj|BAB10993.1| gene_id:F2C19.3~ref|NP_057491.1~similar to unknown protein
           [Arabidopsis thaliana]
          Length = 281

 Score =  114 bits (285), Expect = 1e-24
 Identities = 56/89 (62%), Positives = 65/89 (72%)
 Frame = +1

Query: 298 LQLSYRLRGGGGDGGSTGAESRSCYLEMYAYKKVEKVNPEEARLAKWTRCHLSGELLAAP 477
           L L  RLRGGGGDGG+TGAESR CYL MYA KK +KV+P E RL+KW  C LS E LA P
Sbjct: 2   LTLFPRLRGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRLSKWLNCALSNEPLAEP 61

Query: 478 CVADELGNLYNKDALIVRLLDKKLAPRLS 564
           CV D LGNL+NK+ L+  LL K+L  + S
Sbjct: 62  CVIDLLGNLFNKEVLVHALLSKRLPKQFS 90

>ref|NP_200610.1| expressed protein [Arabidopsis thaliana] gi|34365743|gb|AAQ65183.1|
           At5g58020 [Arabidopsis thaliana]
          Length = 354

 Score =  114 bits (285), Expect = 1e-24
 Identities = 56/89 (62%), Positives = 65/89 (72%)
 Frame = +1

Query: 298 LQLSYRLRGGGGDGGSTGAESRSCYLEMYAYKKVEKVNPEEARLAKWTRCHLSGELLAAP 477
           L L  RLRGGGGDGG+TGAESR CYL MYA KK +KV+P E RL+KW  C LS E LA P
Sbjct: 75  LTLFPRLRGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRLSKWLNCALSNEPLAEP 134

Query: 478 CVADELGNLYNKDALIVRLLDKKLAPRLS 564
           CV D LGNL+NK+ L+  LL K+L  + S
Sbjct: 135 CVIDLLGNLFNKEVLVHALLSKRLPKQFS 163

>ref|XP_215952.2| similar to 2410001C21Rik protein [Rattus norvegicus]
          Length = 356

 Score = 58.9 bits (141), Expect = 5e-08
 Identities = 34/67 (50%), Positives = 42/67 (61%), Gaps = 2/67 (2%)
 Frame = +1

Query: 391 KKVEKVNPEEARLAKWTRCHLSGELLAAPCVADELGNLYNKDALIVRLLDKKLAPRL--S 564
           KKVEKV+ +   +A+W  C LS E+L  P VA ELG LYNKDA+I  LLDK     L  +
Sbjct: 69  KKVEKVDKDAELVAQWNYCTLSQEVLRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKA 128

Query: 565 TSRAASV 585
           TS   S+
Sbjct: 129 TSHIRSI 135

>gb|AAF17212.1|AF117231_1 protein x 0001 [Homo sapiens]
          Length = 306

 Score = 58.9 bits (141), Expect = 5e-08
 Identities = 34/64 (53%), Positives = 41/64 (63%)
 Frame = +1

Query: 391 KKVEKVNPEEARLAKWTRCHLSGELLAAPCVADELGNLYNKDALIVRLLDKKLAPRLSTS 570
           KKVEKV+ +   +A+W  C LS E+L  P VA ELG LYNKDA+I  LLDK     L   
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKAL--G 76

Query: 571 RAAS 582
           +AAS
Sbjct: 77  KAAS 80

>ref|NP_057491.1| chromosome 20 open reading frame 43 [Homo sapiens]
           gi|6841550|gb|AAF29128.1|AF161513_1 HSPC164 [Homo
           sapiens]
          Length = 306

 Score = 58.9 bits (141), Expect = 5e-08
 Identities = 34/64 (53%), Positives = 41/64 (63%)
 Frame = +1

Query: 391 KKVEKVNPEEARLAKWTRCHLSGELLAAPCVADELGNLYNKDALIVRLLDKKLAPRLSTS 570
           KKVEKV+ +   +A+W  C LS E+L  P VA ELG LYNKDA+I  LLDK     L   
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKAL--G 76

Query: 571 RAAS 582
           +AAS
Sbjct: 77  KAAS 80



EST assemble image


clone accession position
1 CM018a01_r AV387281 1 608
2 HC022d01_r AV633564 13 519
3 CM049h06_r AV389631 16 373
4 HC050c08_r AV635738 20 472




Chlamydomonas reinhardtii
Kazusa DNA Research Institute