KCC001098A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001098A_C01 KCC001098A_c01
caaggcgcgccaggccgccaagaacgagattgagaagctcaagctcaacgagctgagcgc
gcgcgaggcggtcattgaggCCGTGAAGATCCTGTACAAGGTGCGGGACGAGGACGGCAA
GAAGTTCGAGCTAGACGTGAGCTGGGTGTGCGACGAGTCCGGCAAGGTGCACCAGCGGGT
ACCTGACGAGCTGCTGGCGGAGGCTGAGCGGCAAGCCAAGGCGGCGCTGGAGGACAGCGA
CATGGACGACTAGGCGCTGCGCAGAGAGTCCTGGCACAGGCGGTGGCGGCGGTGCGCGGG
GCGCTATGGTGCAGGTACTAGTGGCGCAGAGAGGACTGGCACAGGCGGCGGCATGAGCGC
AGGGTAATACCGTAGTGGCGCAGGTGATGGCCATGGAGATGTGGTTTGTGAGATGTGTGG
CACAGCCGCAGCCGAGGGCGGAGGTGCGGTGCCGCATGTGCCCCAGGGTCTCGGGGTAGT
GCGTTGCGTGTATGTAGGGAAGGGTGTGTGGGGCGGAGGCGCCTGTCAGGACCCAAAAGC
GAGCTCTGTTGCTGTCTGATCAGCGATTGAGGCAGTCGAGGAGATTAAGTTCAACCTAGT
TCAGCGGTACAGCCGTGATGGTGCGAGCGCTGTTGGACAGAGTGTGGTGCTACTGCATGG
ACGGCGGGCGCCGGTCCGCCGCGCGCGTGCCAGTCGAGAGGCCGGCAGTGTACGCCTGGG
GCGCTGCGGGGTAGGGGCAGGTCGCGTAAGAAGGTTAGAAAGCATGATATCTCCAaggac
gaacaagcaccagctgtaacataccttagaaagaaaaaaaaaaaaaaaaaactcgagact
agttctctctctctc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001098A_C01 KCC001098A_c01
         (855 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|O24362|PSA3_SPIOL Proteasome subunit alpha type 3 (20S protea...   102  1e-20
emb|CAC43323.1| putative alpha7 proteasome subunit [Nicotiana ta...   100  3e-20
ref|NP_180270.1| 20S proteasome alpha subunit G (PAG1) [Arabidop...    98  2e-19
sp|Q9LSU0|PSA3_ORYSA Proteasome subunit alpha type 3 (20S protea...    98  2e-19
emb|CAA74027.1| multicatalytic endopeptidase complex, proteasome...    98  2e-19

>sp|O24362|PSA3_SPIOL Proteasome subunit alpha type 3 (20S proteasome alpha subunit G)
           (20S proteasome subunit alpha-7) (Proteasome component
           C8) gi|7435886|pir||T09139 26S proteasome alpha chain -
           spinach gi|2285802|dbj|BAA21651.1| 26S proteasome alpha
           subunit [Spinacia oleracea]
          Length = 249

 Score =  102 bits (253), Expect = 1e-20
 Identities = 50/83 (60%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
 Frame = +2

Query: 2   KARQAAKNEIEKLKLNELSAREAVIEAVKILYKVRDE-DGKKFELDVSWVCDESGKVHQR 178
           K +QAAK EIEKLKL+E++ RE +IE  KI+YKV DE   K FEL++SW+CDES + HQ+
Sbjct: 167 KGKQAAKTEIEKLKLSEMTCREGIIEVAKIIYKVHDEAKDKAFELEMSWICDESKREHQK 226

Query: 179 VPDELLAEAERQAKAALEDSDMD 247
           VPD LL EA+  A AALE+ D D
Sbjct: 227 VPDNLLQEAKAAATAALEEMDAD 249

>emb|CAC43323.1| putative alpha7 proteasome subunit [Nicotiana tabacum]
          Length = 249

 Score =  100 bits (249), Expect = 3e-20
 Identities = 51/83 (61%), Positives = 62/83 (74%), Gaps = 1/83 (1%)
 Frame = +2

Query: 2   KARQAAKNEIEKLKLNELSAREAVIEAVKILYKVRDE-DGKKFELDVSWVCDESGKVHQR 178
           K RQAAK EIEKLKL+E++ R+ VIE  KI+Y V DE   K FEL+ SWVCDES + HQ+
Sbjct: 167 KGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELETSWVCDESNRQHQK 226

Query: 179 VPDELLAEAERQAKAALEDSDMD 247
           VP +LL EA+  AKAALE+ D D
Sbjct: 227 VPADLLEEAKAAAKAALEEMDAD 249

>ref|NP_180270.1| 20S proteasome alpha subunit G (PAG1) [Arabidopsis thaliana]
           gi|12644056|sp|O23715|PSA3_ARATH Proteasome subunit
           alpha type 3 (20S proteasome alpha subunit G)
           gi|25290056|pir||G84667 20S proteasome subunit C8
           (PAG1/PRC8_ARATH) [imported] - Arabidopsis thaliana
           gi|3421096|gb|AAC32064.1| 20S proteasome subunit PAG1
           [Arabidopsis thaliana] gi|3885332|gb|AAC77860.1| 20S
           proteasome alpha subunit G (PAG1) [Arabidopsis thaliana]
           gi|14030729|gb|AAK53039.1|AF375455_1 At2g27020/T20P8.7
           [Arabidopsis thaliana] gi|21617882|gb|AAM66932.1| 20S
           proteasome subunit C8 (PAG1/PRC8_ARATH) [Arabidopsis
           thaliana] gi|21700783|gb|AAM70515.1| At2g27020/T20P8.7
           [Arabidopsis thaliana]
          Length = 249

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 47/83 (56%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
 Frame = +2

Query: 2   KARQAAKNEIEKLKLNELSAREAVIEAVKILYKVRDE-DGKKFELDVSWVCDESGKVHQR 178
           K +QAAK EIEKL L+E++ +E VIE  KI+YK+ DE   K FEL++SW+C+ES + HQ+
Sbjct: 167 KGKQAAKTEIEKLNLSEMTCKEGVIEVAKIIYKLHDEAKDKAFELEMSWICEESKREHQK 226

Query: 179 VPDELLAEAERQAKAALEDSDMD 247
           VPD+LL EA+  AK ALE+ D D
Sbjct: 227 VPDDLLEEAKTAAKTALEEMDAD 249

>sp|Q9LSU0|PSA3_ORYSA Proteasome subunit alpha type 3 (20S proteasome alpha subunit G)
           (20S proteasome subunit alpha-7)
           gi|8671500|dbj|BAA96833.1| alpha 7 subunit of 20S
           proteasome [Oryza sativa (japonica cultivar-group)]
           gi|18844761|dbj|BAB85232.1| proteasome subunit alpha
           type 3 [Oryza sativa (japonica cultivar-group)]
           gi|20160705|dbj|BAB89648.1| proteasome subunit alpha
           type 3 [Oryza sativa (japonica cultivar-group)]
          Length = 249

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 48/83 (57%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
 Frame = +2

Query: 2   KARQAAKNEIEKLKLNELSAREAVIEAVKILYKVRDE-DGKKFELDVSWVCDESGKVHQR 178
           K RQAAK EIEKLKL+EL+ RE ++E  KI+Y V DE   K FEL++SW+CDES + HQ+
Sbjct: 167 KGRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVHDEAKDKAFELELSWICDESNRQHQK 226

Query: 179 VPDELLAEAERQAKAALEDSDMD 247
           VP +LL +A+  A+AALE+ D D
Sbjct: 227 VPADLLEQAKVAAQAALEEMDAD 249

>emb|CAA74027.1| multicatalytic endopeptidase complex, proteasome component, alpha
           subunit [Arabidopsis thaliana]
          Length = 249

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 47/83 (56%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
 Frame = +2

Query: 2   KARQAAKNEIEKLKLNELSAREAVIEAVKILYKVRDE-DGKKFELDVSWVCDESGKVHQR 178
           K +QAAK EIEKL L+E++ +E VIE  KI+YK+ DE   K FEL++SW+C+ES + HQ+
Sbjct: 167 KGKQAAKTEIEKLNLSEMTCKEGVIEVAKIIYKLHDEAKDKAFELEMSWICEESKREHQK 226

Query: 179 VPDELLAEAERQAKAALEDSDMD 247
           VPD+LL EA+  AK ALE+ D D
Sbjct: 227 VPDDLLEEAKTAAKTALEEMDAD 249



EST assemble image


clone accession position
1 CM017d11_r AV388151 1 586
2 LC064g07_r AV623503 327 855




Chlamydomonas reinhardtii
Kazusa DNA Research Institute