KCC001096A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001096A_C01 KCC001096A_c01
GCTGTGACGCGTCGCCGCCTTTTAGACCACACACCGCCACTTTGAAGCGCATCTTCTGAA
ATGGCGTTGCCCGGCCAGACGACCCCTGAGGGCGTGCCTGCCTTCAAGCTAGTGCTTGTG
GGCGATGGTGGCACTGGCAAGACCACCTTCGTTAAGCGCCACATCACTGGCGAGTTCGAG
AAGAAGTATGAGCCCACGATCGGCGTGGAGGTCCGCCCCCGTGGCACTTCACCACCAACC
GCGGCAAGATTCGCTTCTACTGCTGGGACACTGCTGGTCAGGAGAAGTTCGGTGGCCTGC
GTGACGGCTACTACATCCACGGCCAGTGCGCAATTATCATGTTCGACGTCACTTCGCGCC
TTACCTACAAGAACGTGCCCACTTGGCACCGCGACCTTTGCCGCGTTTGCGAGAACATTC
CCATCGTGCTGTGCGGCAACAAGGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGG
TCACTTTCCACCGCAAGAAGAACCTGCAGTACTATGAGATCTCGGCCAAGTCGAACTACA
ACTACGAGAAGCCGTTCCTATACCTGGCCCGCAAGCTGACCGGCGACCCCCACCTCAGCT
TCGTGGAGGAGGTGGCTCTGCCCCCTCCCGAGGTGCAGATCGACCTGGCGGAGCAGCAGC
GCAACGAGGCAGAGCTGGAGCAGGCGGCGCAGCAGCCACTGCCCGCGGACGACGACGATG
AGCTGCTGGACTAAGCGTTGCGGCGAAGAAGCAGCTGTCTGTGGATGCTGnGTGCGTGCC
TGCGGGGCCCCTTCTGCATTCTGTTGGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001096A_C01 KCC001096A_c01
         (808 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAA81911.1| Ran [Oryza sativa (japonica cultivar-group)] gi|...   311  e-104
gb|AAL30396.1|AF433653_1 small Ras-related GTP-binding protein [...   309  e-103
sp|P41918|RANA_TOBAC GTP-binding nuclear protein RAN-A1 gi|49626...   309  e-103
emb|CAC10213.1| GTP-binding protein [Cicer arietinum]                 309  e-103
gb|AAM12880.1|AF495716_1 GTP-binding protein [Helianthus annuus]      308  e-103

>dbj|BAA81911.1| Ran [Oryza sativa (japonica cultivar-group)]
           gi|18146760|dbj|BAB82438.1| small GTP-binding protein
           (Ran2) [Oryza sativa (japonica cultivar-group)]
          Length = 221

 Score =  311 bits (798), Expect(2) = e-104
 Identities = 149/167 (89%), Positives = 153/167 (91%)
 Frame = +3

Query: 219 PWHFTTNRGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL 398
           P  FTTN GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL
Sbjct: 52  PLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL 111

Query: 399 CRVCENIPIVLCGNKVDVKNRQVKPKQVTFHRKKNLQYYEISAKSNYNYEKPFLYLARKL 578
           CRVCENIPIVLCGNKVDVKNRQVK KQVTFHRKKNLQYYEISAKSNYN+EKPFLYLARKL
Sbjct: 112 CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171

Query: 579 TGDPHLSFVEEVALPPPEVQIDLAEQQRNEAELEQAAQQPLPADDDD 719
            GDP+L FVE VAL PPEV IDLA QQ++EAEL  AA QPLP DDDD
Sbjct: 172 AGDPNLHFVEAVALKPPEVPIDLAMQQQHEAELAAAAAQPLPDDDDD 218

 Score = 89.0 bits (219), Expect(2) = e-104
 Identities = 43/53 (81%), Positives = 47/53 (88%)
 Frame = +1

Query: 61  MALPGQTTPEGVPAFKLVLVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVRP 219
           MALP Q T +  P+FKLV+VGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEV P
Sbjct: 1   MALPNQGTVD-YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP 52

>gb|AAL30396.1|AF433653_1 small Ras-related GTP-binding protein [Triticum aestivum]
           gi|19919694|gb|AAM08320.1|AF488730_1 small Ran-related
           GTP-binding protein [Triticum aestivum]
          Length = 221

 Score =  309 bits (792), Expect(2) = e-103
 Identities = 147/167 (88%), Positives = 152/167 (90%)
 Frame = +3

Query: 219 PWHFTTNRGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL 398
           P  FTTN GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL
Sbjct: 52  PLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL 111

Query: 399 CRVCENIPIVLCGNKVDVKNRQVKPKQVTFHRKKNLQYYEISAKSNYNYEKPFLYLARKL 578
           CRVCENIPIVLCGNKVDVKNRQVK KQVTFHRKKNLQYYEISAKSNYN+EKPFLYLARKL
Sbjct: 112 CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171

Query: 579 TGDPHLSFVEEVALPPPEVQIDLAEQQRNEAELEQAAQQPLPADDDD 719
            GDP++ FVE VAL PPEV  DLA QQ++EAEL  AA QPLP DDDD
Sbjct: 172 AGDPNIHFVEAVALKPPEVTFDLAMQQQHEAELAAAAAQPLPDDDDD 218

 Score = 89.7 bits (221), Expect(2) = e-103
 Identities = 43/53 (81%), Positives = 47/53 (88%)
 Frame = +1

Query: 61  MALPGQTTPEGVPAFKLVLVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVRP 219
           MALP Q T +  P+FKLV+VGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEV P
Sbjct: 1   MALPNQNTVD-YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP 52

>sp|P41918|RANA_TOBAC GTP-binding nuclear protein RAN-A1 gi|496268|gb|AAA73563.1|
           GTP-binding protein
          Length = 221

 Score =  309 bits (791), Expect(2) = e-103
 Identities = 149/171 (87%), Positives = 154/171 (89%)
 Frame = +3

Query: 219 PWHFTTNRGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL 398
           P  F TN GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDL
Sbjct: 52  PLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL 111

Query: 399 CRVCENIPIVLCGNKVDVKNRQVKPKQVTFHRKKNLQYYEISAKSNYNYEKPFLYLARKL 578
           CRVCENIPIVLCGNKVDVKNRQVK KQVTFHRKKNLQYYEISAKSNYN+EKPFLYLARKL
Sbjct: 112 CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171

Query: 579 TGDPHLSFVEEVALPPPEVQIDLAEQQRNEAELEQAAQQPLPADDDDELLD 731
            GDP+L FVE  AL PPEVQIDLA QQ++EAEL  AA QPLP DDDDE  D
Sbjct: 172 AGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLP-DDDDETFD 221

 Score = 89.7 bits (221), Expect(2) = e-103
 Identities = 43/53 (81%), Positives = 47/53 (88%)
 Frame = +1

Query: 61  MALPGQTTPEGVPAFKLVLVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVRP 219
           MALPGQ   +  P+FKLV+VGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEV P
Sbjct: 1   MALPGQQAVD-YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP 52

>emb|CAC10213.1| GTP-binding protein [Cicer arietinum]
          Length = 221

 Score =  309 bits (791), Expect(2) = e-103
 Identities = 146/167 (87%), Positives = 152/167 (90%)
 Frame = +3

Query: 219 PWHFTTNRGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL 398
           P  F TN GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDL
Sbjct: 52  PLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL 111

Query: 399 CRVCENIPIVLCGNKVDVKNRQVKPKQVTFHRKKNLQYYEISAKSNYNYEKPFLYLARKL 578
           CRVCENIPIVLCGNKVDVKNRQVK KQVTFHRKKNLQYYEISAKSNYN+EKPFLYLARKL
Sbjct: 112 CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171

Query: 579 TGDPHLSFVEEVALPPPEVQIDLAEQQRNEAELEQAAQQPLPADDDD 719
            GDP+L FVE  AL PPEVQIDL  QQ++EAE+ QAA QPLP DDDD
Sbjct: 172 AGDPNLHFVESPALAPPEVQIDLVAQQQHEAEIAQAANQPLPDDDDD 218

 Score = 89.4 bits (220), Expect(2) = e-103
 Identities = 43/53 (81%), Positives = 47/53 (88%)
 Frame = +1

Query: 61  MALPGQTTPEGVPAFKLVLVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVRP 219
           MALP Q T +  P+FKLV+VGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEV P
Sbjct: 1   MALPNQQTVD-YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP 52

>gb|AAM12880.1|AF495716_1 GTP-binding protein [Helianthus annuus]
          Length = 221

 Score =  308 bits (789), Expect(2) = e-103
 Identities = 146/167 (87%), Positives = 152/167 (90%)
 Frame = +3

Query: 219 PWHFTTNRGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL 398
           P  F TN GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDL
Sbjct: 52  PLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL 111

Query: 399 CRVCENIPIVLCGNKVDVKNRQVKPKQVTFHRKKNLQYYEISAKSNYNYEKPFLYLARKL 578
           CRVCENIPIVLCGNKVDVKNRQVK KQVTFHRKKNLQYYEISAKSNYN+EKPFLYLARKL
Sbjct: 112 CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171

Query: 579 TGDPHLSFVEEVALPPPEVQIDLAEQQRNEAELEQAAQQPLPADDDD 719
            GDP+L FVE  AL PPEVQID+A QQ++EAEL  AA QPLP DDDD
Sbjct: 172 AGDPNLHFVESPALAPPEVQIDMAAQQQHEAELAAAASQPLPDDDDD 218

 Score = 89.4 bits (220), Expect(2) = e-103
 Identities = 43/53 (81%), Positives = 47/53 (88%)
 Frame = +1

Query: 61  MALPGQTTPEGVPAFKLVLVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVRP 219
           MALP Q T +  P+FKLV+VGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEV P
Sbjct: 1   MALPNQQTVD-YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP 52



EST assemble image


clone accession position
1 MX224c09_r BP090464 1 314
2 HC037b08_r AV634735 10 611
3 LC032b01_r AV621159 54 569
4 MX227e11_r BP090692 87 389
5 CM073a04_r AV391386 88 706
6 MX202e01_r BP089185 90 462
7 LC081h12_r AV624739 90 602
8 CM037f10_r AV388876 94 642
9 MX203e05_r BP089237 97 462
10 HC075c12_r AV637609 97 557
11 LC016c07_r AV620014 97 652
12 LCL027e05_r AV627488 97 428
13 MX237e10_r BP091358 98 383
14 LC046e08_r AV622205 98 511
15 LC061f07_r AV623292 98 640
16 LC043b10_r AV622025 98 443
17 LC084e10_r AV624921 98 564
18 MX061d12_r BP088478 99 499
19 LC050c06_r AV622480 100 652
20 LC056h03_r AV622942 101 602
21 LC083d09_r AV624838 101 631
22 MX201f09_r BP089150 101 465
23 LC027b05_r AV620809 101 583
24 LC013f01_r AV619816 102 633
25 LC001f04_r AV618937 104 648
26 MX066f02_r BP088689 105 518
27 LC001h10_r AV618963 105 603
28 LC004a09_r AV619118 105 601
29 HC020f07_r AV633425 107 633
30 LC018f04_r AV620177 108 648
31 LC099c04_r AV625875 108 444
32 MX045h06_r BP087895 109 603
33 LC043d04_r AV621972 109 618
34 MX252b08_r BP092293 112 597
35 CM022e11_r AV387845 120 753
36 HC007e12_r AV632389 134 627
37 LC076b01_r AV624319 159 560
38 CM085f08_r AV392362 235 582
39 CM017c10_r AV388190 284 912
40 CM074c07_r AV391541 297 933
41 CM042b08_r AV389235 671 834




Chlamydomonas reinhardtii
Kazusa DNA Research Institute