KCC001085A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001085A_C01 KCC001085A_c01
CGACAACTTATCAACTTTTAAAGAATGCTCGCTTCTCGTGCTCGCGTGCAAGCTCGTCCC
GCCCATCGGGTGGGTCGCCGTTCCACGGTGCTGGTATCCGCGGCCGCTGCCACCACGGAG
ATGCCGCGCTGGCCGGTGGTGTTCGCCAAGCTGACCGCTGCTAAGGTCCAGAGCGTCTCG
CCTGAGGAGGCCGCTCGGCGCGTCGAGTCCGGGGAGTGGCTGCTGGTGGATGTTCGCCTG
GCGGAGCAGCACCAGACCGGTGCGCCGGAGGGTGCTGTGAACGTGCCCATCTACGAGACC
ATTACCATGGAGGGGGCTGACTTCCGCAAGTTGCTGAAGGCTGTCATGTACAAGTCCAAC
GGCGTAAACCCGGTGGACCCCAACCCCAAGTTCAACGAGCAAATCAAGGCAGCAGTGGCC
AAGGCCGGCGCCAAGGGTGTCATCACCATGTGCGAGGCGGGCGGCACCCTCAAGCCCTCC
ACCAACTTTCCCGAGGGCAAGCCCAGCCGCTCGCTCCAGGCGGCTTACCGCGTCCTGACC
GAGGGCCTGGCCCCGTCTGTGGCCCATCTGGATCGGGGCGTGTACGGCTGGTACCAGGCG
GATCTGCCCATGAGCGGCGAGTACAAGCCCGACATCGGCCGCACGCCCATGGCCGCCGCA
GAGCCCACCCTGCAGCTGTGTCAACCAGTGAGCGCGGCTACGAGATGCGCCCCGAGGACA
AGCCTGTAGAGGCTTGCAGCAAGAAGCTGTGTGCCTGGTAAACATGTGCACAACCATATC
AACGCAACTGCTGACTCGGTTGGGTGCGGGGCTTATAGCAGGGGCCGAAGCGGTACGCAA
GACGCGACAGCAGGTGCGTTGGATGACCAGCATTGGTCTTCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001085A_C01 KCC001085A_c01
         (882 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM62459.1| unknown [Arabidopsis thaliana]                          86  6e-16
ref|NP_567785.1| rhodanese-like domain protein [Arabidopsis thal...    86  6e-16
pir||T05875 hypothetical protein T29A15.190 - Arabidopsis thalia...    86  8e-16
dbj|BAC87331.1| unnamed protein product [Homo sapiens]                 51  2e-05
ref|ZP_00007171.1| COG1663: Tetraacyldisaccharide-1-P 4'-kinase ...    49  8e-05

>gb|AAM62459.1| unknown [Arabidopsis thaliana]
          Length = 224

 Score = 86.3 bits (212), Expect = 6e-16
 Identities = 59/192 (30%), Positives = 97/192 (49%), Gaps = 6/192 (3%)
 Frame = +1

Query: 55  RPAHRVGRRSTVLVSAAAATTEMPR----WPVVFAKLTAAKVQSVSPEEAARRVESGEWL 222
           R A  V    T+ +   +     P     W      L   +V+SV  +EA R  +   ++
Sbjct: 33  RSAAMVSGHKTLKIQCTSTKPAKPAAEVDWRQKRELLLEKRVRSVDVKEAQRLQKENNFV 92

Query: 223 LVDVRLAEQHQTGAPEGAVNVPIYETITMEGA-DFRKLLKAVMYKSNGV-NPVDPNPKFN 396
           ++DVR   +++ G P GA+NV +Y  I    A D  + L    +   G+ +  + NP+F 
Sbjct: 93  ILDVRPEAEYKAGHPPGAINVEMYRLIREWTAWDIARRLGFAFF---GIFSGTEENPEFI 149

Query: 397 EQIKAAVAKAGAKGVITMCEAGGTLKPSTNFPEGKPSRSLQAAYRVLTEGLAPSVAHLDR 576
           + ++A + K     +I  C + GT+KP+ N PEG+ SRSL AAY ++  G   +V HL+ 
Sbjct: 150 QSVEAKLDKEAK--IIVACSSAGTMKPTQNLPEGQQSRSLIAAYLLVLNGY-KNVFHLEG 206

Query: 577 GVYGWYQADLPM 612
           G+Y W +  LP+
Sbjct: 207 GIYTWGKEGLPV 218

>ref|NP_567785.1| rhodanese-like domain protein [Arabidopsis thaliana]
           gi|15215616|gb|AAK91353.1| AT4g27700/T29A15_190
           [Arabidopsis thaliana] gi|20334878|gb|AAM16195.1|
           AT4g27700/T29A15_190 [Arabidopsis thaliana]
          Length = 224

 Score = 86.3 bits (212), Expect = 6e-16
 Identities = 59/192 (30%), Positives = 97/192 (49%), Gaps = 6/192 (3%)
 Frame = +1

Query: 55  RPAHRVGRRSTVLVSAAAATTEMPR----WPVVFAKLTAAKVQSVSPEEAARRVESGEWL 222
           R A  V    T+ +   +     P     W      L   +V+SV  +EA R  +   ++
Sbjct: 33  RSAAMVSGHKTLKIQCTSTKPAKPAAEVDWRQKRELLLEKRVRSVDVKEAQRLQKENNFV 92

Query: 223 LVDVRLAEQHQTGAPEGAVNVPIYETITMEGA-DFRKLLKAVMYKSNGV-NPVDPNPKFN 396
           ++DVR   +++ G P GA+NV +Y  I    A D  + L    +   G+ +  + NP+F 
Sbjct: 93  ILDVRPEAEYKAGHPPGAINVEMYRLIREWTAWDIARRLGFAFF---GIFSGTEENPEFI 149

Query: 397 EQIKAAVAKAGAKGVITMCEAGGTLKPSTNFPEGKPSRSLQAAYRVLTEGLAPSVAHLDR 576
           + ++A + K     +I  C + GT+KP+ N PEG+ SRSL AAY ++  G   +V HL+ 
Sbjct: 150 QSVEAKLDKEAK--IIVACSSAGTMKPTQNLPEGQQSRSLIAAYLLVLNGY-KNVFHLEG 206

Query: 577 GVYGWYQADLPM 612
           G+Y W +  LP+
Sbjct: 207 GIYTWGKEGLPV 218

>pir||T05875 hypothetical protein T29A15.190 - Arabidopsis thaliana
           gi|4469021|emb|CAB38282.1| hypothetical protein
           [Arabidopsis thaliana] gi|7269624|emb|CAB81420.1|
           hypothetical protein [Arabidopsis thaliana]
          Length = 237

 Score = 85.9 bits (211), Expect = 8e-16
 Identities = 53/156 (33%), Positives = 88/156 (55%), Gaps = 2/156 (1%)
 Frame = +1

Query: 151 LTAAKVQSVSPEEAARRVESGEWLLVDVRLAEQHQTGAPEGAVNVPIYETITMEGA-DFR 327
           L   +V+SV  +EA R  +   ++++DVR   +++ G P GA+NV +Y  I    A D  
Sbjct: 82  LLEKRVRSVDVKEAQRLQKENNFVILDVRPEAEYKAGHPPGAINVEMYRLIREWTAWDIA 141

Query: 328 KLLKAVMYKSNGV-NPVDPNPKFNEQIKAAVAKAGAKGVITMCEAGGTLKPSTNFPEGKP 504
           + L    +   G+ +  + NP+F + ++A + K     +I  C + GT+KP+ N PEG+ 
Sbjct: 142 RRLGFAFF---GIFSGTEENPEFIQSVEAKLDKEAK--IIVACSSAGTMKPTQNLPEGQQ 196

Query: 505 SRSLQAAYRVLTEGLAPSVAHLDRGVYGWYQADLPM 612
           SRSL AAY ++  G   +V HL+ G+Y W +  LP+
Sbjct: 197 SRSLIAAYLLVLNGY-KNVFHLEGGIYTWGKEGLPV 231

>dbj|BAC87331.1| unnamed protein product [Homo sapiens]
          Length = 516

 Score = 51.2 bits (121), Expect = 2e-05
 Identities = 66/217 (30%), Positives = 81/217 (36%), Gaps = 3/217 (1%)
 Frame = +3

Query: 27  ARFSCSRASSSRPSGGSP---FHGAGIRGRCHHGDAALAGGVRQADRC*GPERLA*GGRS 197
           AR +  RA  + P GGS    +HGAG  G CH G     GG  + +   G + LA G + 
Sbjct: 143 ARVAAGRACRAPPGGGSRGARYHGAG-GGGCHGGAGVRIGGQHRLEAVLGQQVLAGGEQ- 200

Query: 198 ARRVRGVAAGGCSPGGAAPDRCAGGCCERAHLRDHYHGGG*LPQVAEGCHVQVQRRKPGG 377
                    GG   GGA      GG  ERA +               G  ++VQR   G 
Sbjct: 201 --------VGGGGGGGAEARGAEGGVRERAEVG------------VVGAQLRVQRGLGGA 240

Query: 378 PQPQVQRANQGSSGQGRRQGCHHHVRGGRHPQALHQLSRGQAQPLAPGGLPRPDRGPGPV 557
              +VQRA +  SG                   LH   R +A    P   PR  R  G +
Sbjct: 241 ---RVQRALEPPSG------------------VLHFQPRARAAVHVP---PRRRRAVGHL 276

Query: 558 CGPSGSGRVRLVPGGSAHERRVQARHRPHAHGRRRAH 668
            G       RLVP G    R   AR +P   G RR H
Sbjct: 277 AGRQRRMEARLVP-GLVRVRHAHARVQP--VGCRRVH 310

>ref|ZP_00007171.1| COG1663: Tetraacyldisaccharide-1-P 4'-kinase [Rhodobacter
           sphaeroides]
          Length = 590

 Score = 49.3 bits (116), Expect = 8e-05
 Identities = 74/267 (27%), Positives = 89/267 (32%), Gaps = 29/267 (10%)
 Frame = +3

Query: 21  KNARFSCSRASSSRPSGGSPFHGAGIRGRCHHGDAALAGGVRQ-----ADRC*GPERLA* 185
           +  R    R   +R +GG P  G   R   H G A   G   +     A R  GP     
Sbjct: 22  RRPRLPQGRKLLARHAGGGPARGGQPRAALHRGRARRVGAASRPPAGVARR--GPSHRGR 79

Query: 186 GGRSARRVRGVAAGGCSPGGAAPDRCAGGCCERAHLRDHYHGGG*L---PQVAEGC---H 347
           G R  R  RG  A        A DR A G   R   R    G G     P+   G    H
Sbjct: 80  GRRHRRASRGAQARAPD----AADRRAAGARPRRRFRRALRGRGLEGRPPRRRRGAGRRH 135

Query: 348 VQVQRRKPGGPQPQVQRANQGSSGQGRRQGCHHHVRGGRHPQALHQLSRGQAQPLAP--- 518
             ++ R+ GG +P V   + G+    RRQ      RG R   A   L+R    P  P   
Sbjct: 136 RGLRGRRHGGARPLV---SAGAGDMARRQP----QRGLRAGPARGGLARFGPDPRPPFRP 188

Query: 519 ---------GGLPRPDRGPGPVCGPSGSGRVRLVPGGSAHERRV------QARHRPHAHG 653
                    GG   P RG GP       G  R   GG+A   R+         HRP    
Sbjct: 189 AWRDAGPALGGARLPSRGLGPRPRRGAGGSARPGSGGAAGPCRLGRGLGRNRGHRPDGGA 248

Query: 654 RRRAHPAAVSTSERGYEMRPEDKPVEA 734
           RR    A        +   P D P  A
Sbjct: 249 RRTPRRAGGLMRPPAFWFTPPDSPALA 275



EST assemble image


clone accession position
1 MX223c12_r BP090394 1 548
2 HC038g11_r AV634854 110 562
3 MX010b10_r BP086497 113 399
4 MX252h01_r BP092338 114 593
5 MX203g07_r BP089252 115 469
6 CM016e04_r AV387493 266 880
7 MX242d11_r BP091669 674 992




Chlamydomonas reinhardtii
Kazusa DNA Research Institute