Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001083A_C01 KCC001083A_c01
(494 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN32900.1| selenoprotein SelM2 [Chlamydomonas reinhardtii] 256 1e-67
gb|AAN32905.1| selenoprotein SelM1 [Chlamydomonas reinhardtii] 70 1e-11
sp|Q8VHC3|SELM_MOUSE Selenoprotein M precursor (SelM protein) 67 9e-11
sp|Q8WWX9|SELM_HUMAN Selenoprotein M precursor (SelM protein) 61 9e-09
ref|NP_444497.1| selenoprotein M [Mus musculus] gi|17223711|gb|A... 60 2e-08
>gb|AAN32900.1| selenoprotein SelM2 [Chlamydomonas reinhardtii]
Length = 138
Score = 256 bits (653), Expect = 1e-67
Identities = 135/139 (97%), Positives = 136/139 (97%), Gaps = 1/139 (0%)
Frame = +3
Query: 57 MRALALALLALALIAQQANAKVARGEFISCPG*-RLNHLPEVKKFIRGDIEKDKAYENLT 233
MRALALALLALALIA +ANAKVARGEFISCPG RLNHLPEVKKFIRGDIEKDKAYENLT
Sbjct: 1 MRALALALLALALIAHEANAKVARGEFISCPG-URLNHLPEVKKFIRGDIEKDKAYENLT 59
Query: 234 VNFVPGRTPELVLYDENGVEIERMFVDKLKYDELHTLVQSKGFKRRDPNAAAATTTATAS 413
VNFVPGRTPELVLYDENGVEIERMFVDKLKYDELHTLVQSKGFKRRDPNAAAATTTATAS
Sbjct: 60 VNFVPGRTPELVLYDENGVEIERMFVDKLKYDELHTLVQSKGFKRRDPNAAAATTTATAS 119
Query: 414 TRRARAARRLLRATEETAC 470
TRRARAARRLLRATEETAC
Sbjct: 120 TRRARAARRLLRATEETAC 138
>gb|AAN32905.1| selenoprotein SelM1 [Chlamydomonas reinhardtii]
Length = 140
Score = 70.5 bits (171), Expect = 1e-11
Identities = 45/100 (45%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Frame = +3
Query: 69 ALALLALALIAQQANAKVARGEFISCPG*-RLNHLPEVKKFIRGDIEKDKAYENLTVNFV 245
A A A + A + N R FISC G RL HLPEVK+F+ D+ + Y +TV+F
Sbjct: 18 AAAQEAASAPAYELNEAGQRMVFISCSG-URLKHLPEVKRFLY-DVVRPNLYHGVTVDFT 75
Query: 246 PGRTPELVLYD-ENGVEIERMFVDKLKYDELHTLVQSKGF 362
PGR+P LYD +N + + V +K+DELHT V+SKGF
Sbjct: 76 PGRSPAAYLYDADNQLVDDGYDVSGMKFDELHTFVRSKGF 115
>sp|Q8VHC3|SELM_MOUSE Selenoprotein M precursor (SelM protein)
Length = 145
Score = 67.4 bits (163), Expect = 9e-11
Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 11/112 (9%)
Frame = +3
Query: 69 ALALLALALIAQQANAK-----------VARGEFISCPG*RLNHLPEVKKFIRGDIEKDK 215
+L LL AL+A + +ARG +C G +LN L EVK F+ DI+
Sbjct: 9 SLLLLLAALVAPATSTTNYRPDWNRLRGLARGRVETCGGCQLNRLKEVKAFVTEDIQ--- 65
Query: 216 AYENLTVNFVPGRTPELVLYDENGVEIERMFVDKLKYDELHTLVQSKGFKRR 371
Y NL + +PG PELVL N E+ER+ + ++ DE++ LVQ GF R+
Sbjct: 66 LYHNLVMKHLPGADPELVLLSRNYQELERIPLSQMTRDEINALVQELGFYRK 117
>sp|Q8WWX9|SELM_HUMAN Selenoprotein M precursor (SelM protein)
Length = 145
Score = 60.8 bits (146), Expect = 9e-09
Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Frame = +3
Query: 66 LALALLALALIAQQANAK-----------VARGEFISCPG*RLNHLPEVKKFIRGDIEKD 212
LAL LL AL+A A + R +C G +LN L EVK F+ DI
Sbjct: 8 LALLLLLAALVAPATAATAYRPDWNRLSGLTRARVETCGGCQLNRLKEVKAFVTQDIP-- 65
Query: 213 KAYENLTVNFVPGRTPELVLYDENGVEIERMFVDKLKYDELHTLVQSKGFKRR 371
Y NL + +PG PELVL E+ER+ + ++ +E++ LVQ GF R+
Sbjct: 66 -FYHNLVMKHLPGADPELVLLGRRYEELERIPLSEMTREEINALVQELGFYRK 117
>ref|NP_444497.1| selenoprotein M [Mus musculus] gi|17223711|gb|AAK95398.1|
selenoprotein SelM [Mus musculus]
Length = 145
Score = 59.7 bits (143), Expect = 2e-08
Identities = 42/113 (37%), Positives = 60/113 (52%), Gaps = 12/113 (10%)
Frame = +3
Query: 69 ALALLALALIAQQANAK-----------VARGEFISCPG*-RLNHLPEVKKFIRGDIEKD 212
+L LL AL+A + +ARG +C G +LN L EVK F+ DI+
Sbjct: 9 SLLLLLAALVAPATSTTNYRPDWNRLRGLARGRVETCGG-UQLNRLKEVKAFVTEDIQ-- 65
Query: 213 KAYENLTVNFVPGRTPELVLYDENGVEIERMFVDKLKYDELHTLVQSKGFKRR 371
Y NL + +PG PELVL N E+ER+ + ++ DE++ LVQ GF R+
Sbjct: 66 -LYHNLVMKHLPGADPELVLLSRNYQELERIPLSQMTRDEINALVQELGFYRK 117
