KCC001078A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001078A_C01 KCC001078A_c01
caagcgcctaggttaccagcgtgcagggacgacgacgaaacaataaaggcgcagcatcta
acggcaatgacaattggaggTTGGACTTTTATGGTGTCGAGTCCGCAAGGCTGACATATG
ATTGCTGTGTGCTACGTCACGTGACGTGGTTTCTACGCACCCATCAGATTGACGGGCGTG
CTGAAACACGACATGCGGCCGTTGTCCCATGTGGCCAAACACCACACACGGTGTTGCGCT
GACTGATGGCGAGTGCCTGTGGACTTGGACATAAACATCTAAATGTCCACCTTCTCTGAA
GAAAGGTGAAAGGTTCGATTTTGTGGTGTGAGAGCCGCCTCACCCCGGTTAGCGCACATG
CTTGAGTGATGTGCCGCAGTAGGTGTTTGGCTTGTCCGTTGTTATTCTATGGTGATGGAG
CAGGGGCGGGGGCGACCGGCTGCCGCCCTGACAAGGCAACAAGGATTGCCGGTTGCTAGG
GTCTACGGAGCGTGCCGCTGCCTCAGACCCTGTGAAACCAACAGTCAATGCTCCGTAAGC
TTGCCGGGGGTAACCCCGTGGCTGCGGAGCAACTGTGTGCGCTTGATTACCCGAGAAACC
GCGCCGTCGTGCCGGGAGCACAGGGTGTGTTGCTCGATGTTGGATGGGGTTGTATGTGGC
AGAGGATCAGCGAGTAGGCAGCACGCGCAGGCAGCAACGGTAGCATCCAGGCTCCCGTAC
AGCCGCGTGCATCCAGATTGGCGGGCACGTGTGCGAAGCTAAGTGCGTTCAAATGATTGG
TTCTATTACCCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001078A_C01 KCC001078A_c01
         (792 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_325119.1| hypothetical protein [Neurospora crassa] gi|289...    37  0.28
ref|NP_730924.1| CG31542-PA [Drosophila melanogaster] gi|2106407...    35  1.1
gb|AAP92503.1| nonribosomal peptide synthetase [Streptomyces vin...    34  2.4
ref|NP_615673.1| conserved hypothetical protein [Methanosarcina ...    34  2.4
emb|CAC40809.1| Xet3 protein [Schedonorus pratensis]                   34  3.1

>ref|XP_325119.1| hypothetical protein [Neurospora crassa] gi|28926558|gb|EAA35529.1|
           hypothetical protein [Neurospora crassa]
          Length = 1542

 Score = 37.4 bits (85), Expect = 0.28
 Identities = 31/92 (33%), Positives = 41/92 (43%), Gaps = 8/92 (8%)
 Frame = -1

Query: 666 SSATYNPIQHRATHPVLPARR-RGFSGNQAHTVAPQPRGYPRQAYGA----LTVG---FT 511
           +S  Y PI  +A H  L A      SG+  H   PQP   P    G     LT+G     
Sbjct: 92  NSGRYGPIADKAPHEHLGALSIPPISGHSGH---PQPLATPPFEVGPGGAQLTLGKRITA 148

Query: 510 GSEAAARSVDPSNRQSLLPCQGGSRSPPPLLH 415
             ++  RS D  ++++LL   GG   PPPL H
Sbjct: 149 EDKSELRSFDSPSKKTLLVAHGGLHLPPPLPH 180

>ref|NP_730924.1| CG31542-PA [Drosophila melanogaster] gi|21064073|gb|AAM29266.1|
           AT15479p [Drosophila melanogaster]
           gi|23170448|gb|AAN13279.1| CG31542-PA [Drosophila
           melanogaster]
          Length = 199

 Score = 35.4 bits (80), Expect = 1.1
 Identities = 29/97 (29%), Positives = 41/97 (41%), Gaps = 5/97 (5%)
 Frame = -1

Query: 663 SATYNPIQHRATHPVLPARRRGFSGNQAHTVAPQPRGYPR-----QAYGALTVGFTGSEA 499
           S  + P Q   + P    R +G  G Q ++   QP G P      Q+ GA TV  T ++ 
Sbjct: 32  SYAHQPQQQPDSCPYPGPRGQGAGGCQVNST--QPPGDPAACSLYQSRGAPTVECTCTQN 89

Query: 498 AARSVDPSNRQSLLPCQGGSRSPPPLLHHHRITTDKP 388
            +R   PS +   + C  G R  PP L       +KP
Sbjct: 90  RSRPPPPSVQADHITCSRGPREQPPALETRCTCREKP 126

>gb|AAP92503.1| nonribosomal peptide synthetase [Streptomyces vinaceus]
          Length = 457

 Score = 34.3 bits (77), Expect = 2.4
 Identities = 33/111 (29%), Positives = 43/111 (38%), Gaps = 5/111 (4%)
 Frame = +1

Query: 415 MEQGRGRPAAALTRQQGLPVARV---YGACRCLRPCETNSQCSVSLPGVTPWLRSNCVRL 585
           ++Q  G P  A+ R    P+ R+       R  R     +     L G  P LR+  VRL
Sbjct: 70  VDQVAGEPRQAVRRHHPRPLRRLDLSQDPARAGREAAAFALRPFDLAGEDP-LRTLLVRL 128

Query: 586 ITRETAPSCREHRVCCSMLDGVVCGRGSAS--RQHAQAATVASRLPYSRVH 732
             R+    C  H +CC  L   V G   A+  R  A    V   LP   VH
Sbjct: 129 GQRDHLLVCSLHHICCDGLSLAVLGEDLAALYRAAAHGQDVGQALPPLPVH 179

>ref|NP_615673.1| conserved hypothetical protein [Methanosarcina acetivorans str.
           C2A] gi|19914516|gb|AAM04153.1| conserved hypothetical
           protein [Methanosarcina acetivorans str. C2A]
          Length = 405

 Score = 34.3 bits (77), Expect = 2.4
 Identities = 23/66 (34%), Positives = 34/66 (50%), Gaps = 6/66 (9%)
 Frame = -2

Query: 707 DATVAACACCLLAD----PLPHTTPSNIEQHTLCSRHDGAVSRVIKRT--QLLRSHGVTP 546
           D  V   A  LL D    P  H T + I+++T   RHD  +  V K    ++L+ HG++P
Sbjct: 74  DKKVEIRAASLLHDVGHGPFSHVTENVIDKYTR-RRHDDVMDIVRKGEIKEVLKKHGISP 132

Query: 545 GKLTEH 528
           G L +H
Sbjct: 133 GNLAKH 138

>emb|CAC40809.1| Xet3 protein [Schedonorus pratensis]
          Length = 288

 Score = 33.9 bits (76), Expect = 3.1
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = -1

Query: 255 HSPSVSATPCVVFGHMGQRPHVVFQHARQSDGCVETTSRDV-AHSNHMSA 109
           H  ++S TPC++  ++   P  VF++ RQS+G    TSR + A+S+  SA
Sbjct: 146 HKYTISWTPCMIVWYVDDLPIRVFRNYRQSNGVAFPTSRPMYAYSSIWSA 195



EST assemble image


clone accession position
1 CM069a06_r AV391206 1 612
2 CM015h12_r AV387425 243 836




Chlamydomonas reinhardtii
Kazusa DNA Research Institute