KCC001076A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001076A_C01 KCC001076A_c01
ttgcttgttGCTACCACAAGCATCTAATTACGCTCGCGAGTTGGCAGTTCTACCAGCTGC
GGTCATCTTCACAGCAGGTCCGCGCTCGACTCCCAAGCGCCTCCTAGTCCCATAGTATTA
CCCTAAGCGCTATTTGGTGGCAGTTGCTGCGCCCGGACTAGCGGCGCTGCCACCACCAAC
TGCGAGCTACCGCACGAAGCAGCCATGTCCATCTACGACCTCATCCAGCGCACAAACATC
ATCCTCAAGAAGTATGAGAAGTATGACGCTCCCATCAAGACCAGGGGCAATAAGACAGAT
GACCCCTTCATGGAAGAGTACCAGGAGGTGGAGGCAGAGCTGGAGAAGCTGCTCGAGGCT
GCCAGCGACGTGGCCCTGGAGCAGAACAGAGCCCTGGTAGCAGCGAAGAACGCGGAAATC
CGCCGGGCAAAGAACGTACTGTTGACAGAGGCAGTACAGGCGCTGGAGAAGAAGGTCAAG
AAGGGGAAAGGCCTGAACAAGCACATCATCGCTGACCGGCAGCAAAAGATCAAGGAGCTG
ATTGAAAAGGTCTACGCGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001076A_C01 KCC001076A_c01
         (559 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T47937 hypothetical protein F2A19.50 - Arabidopsis thaliana...    75  8e-13
ref|NP_567114.1| syntaxin of plants 73 (SYP73) [Arabidopsis thal...    75  8e-13
ref|NP_566354.1| syntaxin of plants 71 (SYP71) [Arabidopsis thal...    70  1e-11
pir||T47468 hypothetical protein F18N11.40 - Arabidopsis thalian...    66  4e-10
ref|NP_566878.1| syntaxin SYP72 [Arabidopsis thaliana] gi|283801...    66  4e-10

>pir||T47937 hypothetical protein F2A19.50 - Arabidopsis thaliana
           gi|6850836|emb|CAB71075.1| putative protein [Arabidopsis
           thaliana]
          Length = 274

 Score = 74.7 bits (182), Expect = 8e-13
 Identities = 47/119 (39%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
 Frame = +1

Query: 205 MSIYDLIQRTNIILKKYEKYDAPIKTRGNKT-DDPFMEEYQEVEAELEKLLEAASDVALE 381
           M + DLI R + I KKYEKYD   +   N + DD F   Y  VE  LE +L+   D++ E
Sbjct: 1   MGVIDLITRVDSICKKYEKYDINRQRDANVSGDDAFSRLYSAVEYALETVLQKTEDLSSE 60

Query: 382 QNRALVAAKNAEIRRAKNVLLTEAVQALEKKVKKGKGLNKHIIADRQQKIKELIEKVYA 558
            N+A   A NAEIRR K  LL    +     +KK KGL+K  +  R   +  L +K+ A
Sbjct: 61  TNKAKAVAMNAEIRRTKARLLEGIPKLQRLSLKKVKGLSKEELDARNDLVLSLRDKIEA 119

>ref|NP_567114.1| syntaxin of plants 73 (SYP73) [Arabidopsis thaliana]
           gi|28380157|sp|Q94KK5|SY73_ARATH Syntaxin 73 (AtSYP73)
           gi|13811652|gb|AAK40227.1|AF355759_1 syntaxin of plants
           73 [Arabidopsis thaliana]
          Length = 263

 Score = 74.7 bits (182), Expect = 8e-13
 Identities = 47/119 (39%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
 Frame = +1

Query: 205 MSIYDLIQRTNIILKKYEKYDAPIKTRGNKT-DDPFMEEYQEVEAELEKLLEAASDVALE 381
           M + DLI R + I KKYEKYD   +   N + DD F   Y  VE  LE +L+   D++ E
Sbjct: 1   MGVIDLITRVDSICKKYEKYDINRQRDANVSGDDAFSRLYSAVEYALETVLQKTEDLSSE 60

Query: 382 QNRALVAAKNAEIRRAKNVLLTEAVQALEKKVKKGKGLNKHIIADRQQKIKELIEKVYA 558
            N+A   A NAEIRR K  LL    +     +KK KGL+K  +  R   +  L +K+ A
Sbjct: 61  TNKAKAVAMNAEIRRTKARLLEGIPKLQRLSLKKVKGLSKEELDARNDLVLSLRDKIEA 119

>ref|NP_566354.1| syntaxin of plants 71 (SYP71) [Arabidopsis thaliana]
           gi|28380165|sp|Q9SF29|SY71_ARATH Syntaxin 71 (AtSYP71)
           gi|6682251|gb|AAF23303.1|AC016661_28 unknown protein
           [Arabidopsis thaliana]
           gi|13811648|gb|AAK40225.1|AF355757_1 syntaxin of plants
           71 [Arabidopsis thaliana] gi|19699303|gb|AAL91262.1|
           AT3g09740/F11F8_33 [Arabidopsis thaliana]
          Length = 266

 Score = 70.5 bits (171), Expect = 1e-11
 Identities = 44/119 (36%), Positives = 61/119 (50%), Gaps = 1/119 (0%)
 Frame = +1

Query: 205 MSIYDLIQRTNIILKKYEKYDAPIKTRGNKT-DDPFMEEYQEVEAELEKLLEAASDVALE 381
           M++ D++ R + I KKY+KYD   +   N + DD F   Y   E ++E  LE A  V  E
Sbjct: 1   MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKE 60

Query: 382 QNRALVAAKNAEIRRAKNVLLTEAVQALEKKVKKGKGLNKHIIADRQQKIKELIEKVYA 558
           +NRA   A NAEIRR K  L  E  +     VK+ KGL    +A R   +  L  ++ A
Sbjct: 61  KNRAAAVAMNAEIRRTKARLSEEVPKLQRLAVKRVKGLTTEELAARNDLVLALPARIEA 119

>pir||T47468 hypothetical protein F18N11.40 - Arabidopsis thaliana
           gi|6967094|emb|CAB72477.1| putative protein [Arabidopsis
           thaliana]
          Length = 264

 Score = 65.9 bits (159), Expect = 4e-10
 Identities = 40/119 (33%), Positives = 62/119 (51%), Gaps = 1/119 (0%)
 Frame = +1

Query: 205 MSIYDLIQRTNIILKKYEKYDAPIKTR-GNKTDDPFMEEYQEVEAELEKLLEAASDVALE 381
           M + D+I R + I KKY+KYD       G   DD F   +  +++++E +L  A   + E
Sbjct: 1   MPVIDIIFRVDEICKKYDKYDIDKHREIGASGDDAFSRLFTSIDSDIEAVLRKAELASTE 60

Query: 382 QNRALVAAKNAEIRRAKNVLLTEAVQALEKKVKKGKGLNKHIIADRQQKIKELIEKVYA 558
           +NRA   A NAE+RR K  L  + V+  +  VKK KGL +     R   +  L +++ A
Sbjct: 61  KNRAAAVAMNAEVRRTKARLAEDVVKLQKLAVKKIKGLTREERESRCDLVIALADRLQA 119

>ref|NP_566878.1| syntaxin SYP72 [Arabidopsis thaliana]
           gi|28380158|sp|Q94KK6|SY72_ARATH Syntaxin 72 (AtSYP72)
           gi|13811650|gb|AAK40226.1|AF355758_1 syntaxin of plants
           72 [Arabidopsis thaliana]
          Length = 267

 Score = 65.9 bits (159), Expect = 4e-10
 Identities = 40/119 (33%), Positives = 62/119 (51%), Gaps = 1/119 (0%)
 Frame = +1

Query: 205 MSIYDLIQRTNIILKKYEKYDAPIKTR-GNKTDDPFMEEYQEVEAELEKLLEAASDVALE 381
           M + D+I R + I KKY+KYD       G   DD F   +  +++++E +L  A   + E
Sbjct: 1   MPVIDIIFRVDEICKKYDKYDIDKHREIGASGDDAFSRLFTSIDSDIEAVLRKAELASTE 60

Query: 382 QNRALVAAKNAEIRRAKNVLLTEAVQALEKKVKKGKGLNKHIIADRQQKIKELIEKVYA 558
           +NRA   A NAE+RR K  L  + V+  +  VKK KGL +     R   +  L +++ A
Sbjct: 61  KNRAAAVAMNAEVRRTKARLAEDVVKLQKLAVKKIKGLTREERESRCDLVIALADRLQA 119



EST assemble image


clone accession position
1 MX239d01_r BP091468 1 280
2 CM015b11_r AV387418 4 581
3 LC015d07_r AV619947 44 562




Chlamydomonas reinhardtii
Kazusa DNA Research Institute