KCC001075A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001075A_C01 KCC001075A_c01
gcacgagatgacctacaaggcctttgagaacgccatggtgctggtcatggccaccggcgg
ctccaccaacgccgtgctgcACTTCATCGCCATGGCGCGCGCCTGCGGCGTGCCCCTGAC
CCTGGACGACTTCCAGCGCGTGTCTGACCGCACGCCCTTCATCTGCGACCTCAAGCCCTC
GGGCCGCTACGTCATGGAGGACATCCACAAGGTGGGCGGCACCCCCGCCGTGCTGAAGTA
CCTGGACTCCAAGGGCTACATCAACCGCGACTGCATGACCGTCACTGGCAAGACCATGGG
CGGCAACCTGGCGGAGGTGCCGGAGCTGCGTGCGGGCCAGGACGTGGTGCTGCCCGTGGA
GAAGCCCATCAAGCAGACTGGCCACATCCAGATCCTGTACGGCAACCTGGCCCCGGAGGG
CAGCGTGGCCAAGATCACTGGCAAGGAGGGCCTGCTGTTCGAGGGCGAGGCGCTGGTGTT
TGACAACGAGGAGGACATGATCACCATGGTGGGCGCCGCAGCCCAACAAGTTCCGCGGCA
AGGTGGTCGGTGATCCGCTACGAGGGCCCCAAGGGGCGGCCCTGGCATGCCCGAGATGCT
CACGCCCACCTCCGCCATCATGGGCGCCGGCCTGGGCAAGGAGTGTGCGCTCCATCACCG
ACGGACGCTTCAGCGGCGGGCAGCCACGGCTTCGTGATCGGCCACGTCACGCCCGAGGGC
GCAGGTCGGCGGCCCCATCGCCCTGGTCAAGAACGGCGACAAGATTGTGATTGATGTGGA
GAAGCGCGTGATGGACATGAAGATCTCCGACCAGGAGCTGGACGCGCGCAAGGCTGCCTG
GAAGGCGCCCCCGCTGAAGGCCACCAGCGGCACCCTGTA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001075A_C01 KCC001075A_c01
         (879 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_870314.1| dihydroxy-acid dehydratase [Pirellula sp.] gi|3...   317  2e-85
ref|NP_189036.1| dihydroxyacid dehydratase -related [Arabidopsis...   316  4e-85
gb|AAK64025.1| putative dihydroxyacid dehydratase [Arabidopsis t...   316  4e-85
ref|NP_593729.1| putative dihydroxy-acid dehydratase precursor [...   290  2e-77
ref|ZP_00119642.1| COG0129: Dihydroxyacid dehydratase/phosphoglu...   286  3e-76

>ref|NP_870314.1| dihydroxy-acid dehydratase [Pirellula sp.]
            gi|32447871|emb|CAD77389.1| dihydroxy-acid dehydratase
            [Pirellula sp.]
          Length = 587

 Score =  317 bits (812), Expect = 2e-85
 Identities = 173/295 (58%), Positives = 212/295 (71%), Gaps = 5/295 (1%)
 Frame = +2

Query: 8    MTYKAFENAMVLVMATGGSTNAVLHFIAMARACGVPLTLDDFQRVSDRTPFICDLKPSGR 187
            MT  AFE+AMV +MA GGSTNAVLH IAMAR+  VPLT++DFQ VSDRTPF+ DLKPSG+
Sbjct: 283  MTRGAFEDAMVTLMALGGSTNAVLHLIAMARSVDVPLTIEDFQSVSDRTPFLADLKPSGK 342

Query: 188  YVMEDIHKVGGTPAVLKYLDSKGYINRDCMTVTGKTMGGNLAEVPELRAGQDVVLPVEKP 367
            +V ED+H VGGTPAV+KYL  KG I  + MTVTGKT+  NLA++P L+ GQ +V  VE+P
Sbjct: 343  FVQEDLHSVGGTPAVMKYLLEKGMIKGEHMTVTGKTLAENLADLPGLKTGQKIVSTVEEP 402

Query: 368  IKQTGHIQILYGNLAPEGSVAKITGKEGLLFEGEALVFDNEEDMITMVGAAAQQVPRQGG 547
            IK++GHI+IL G+LA EG+VAKITGKEGL F G A V+DNEE M+    AA +Q   Q G
Sbjct: 403  IKKSGHIRILKGSLATEGAVAKITGKEGLQFSGPARVYDNEELML----AALEQKQIQKG 458

Query: 548  R*SATR--APRGGPGMPEMLTPTSAIMGAGLGKECALHHRRTLQRRAATAS*S---ATSR 712
                 R   P+GGPGMPEMLTPTSAIMGAGLG + A+        R +  S         
Sbjct: 459  DVVVIRYEGPKGGPGMPEMLTPTSAIMGAGLGSDVAM----LTDGRFSGGSHGFIVGHIT 514

Query: 713  PRAQVGGPIALVKNGDKIVIDVEKRVMDMKISDQELDARKAAWKAPPLKATSGTL 877
            P AQVGGPIAL+++GD I ID E   +D+++   EL+AR++ W APPLKAT GTL
Sbjct: 515  PEAQVGGPIALIEDGDTITIDAETNSLDLEVDAAELEARRSKWTAPPLKATRGTL 569

>ref|NP_189036.1| dihydroxyacid dehydratase -related [Arabidopsis thaliana]
            gi|9294662|dbj|BAB03011.1| dihydroxy-acid dehydratase
            [Arabidopsis thaliana]
            gi|17933301|gb|AAL48233.1|AF446360_1 AT3g23940/F14O13_13
            [Arabidopsis thaliana] gi|24030434|gb|AAN41372.1|
            putative dihydroxyacid dehydratase [Arabidopsis thaliana]
          Length = 608

 Score =  316 bits (809), Expect = 4e-85
 Identities = 168/294 (57%), Positives = 205/294 (69%), Gaps = 4/294 (1%)
 Frame = +2

Query: 8    MTYKAFENAMVLVMATGGSTNAVLHFIAMARACGVPLTLDDFQRVSDRTPFICDLKPSGR 187
            +T K+  NAMV VMA GGSTNAVLH IA+AR+ G+ LTLDDFQ+VSD  PF+ DLKPSG+
Sbjct: 303  ITPKSLRNAMVSVMALGGSTNAVLHLIAIARSVGLELTLDDFQKVSDAVPFLADLKPSGK 362

Query: 188  YVMEDIHKVGGTPAVLKYLDSKGYINRDCMTVTGKTMGGNLAEVPELRAGQDVVLPVEKP 367
            YVMEDIHK+GGTPAVL+YL   G ++ DCMTVTG+T+  NL  VP L  GQ+++ P+  P
Sbjct: 363  YVMEDIHKIGGTPAVLRYLLELGLMDGDCMTVTGQTLAQNLENVPSLTEGQEIIRPLSNP 422

Query: 368  IKQTGHIQILYGNLAPEGSVAKITGKEGLLFEGEALVFDNEEDMITMVGAAAQQVPRQGG 547
            IK+TGHIQIL G+LAP+GSVAKITGKEGL F G ALVF+ EE M+  + A         G
Sbjct: 423  IKETGHIQILRGDLAPDGSVAKITGKEGLYFSGPALVFEGEESMLAAISADPMSFK---G 479

Query: 548  R*SATR--APRGGPGMPEMLTPTSAIMGAGLGKECALHHRRTLQRRAATAS*SATSR--P 715
                 R   P+GGPGMPEMLTPTSAIMGAGLGKECAL    T  R +  +         P
Sbjct: 480  TVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKECAL---LTDGRFSGGSHGFVVGHICP 536

Query: 716  RAQVGGPIALVKNGDKIVIDVEKRVMDMKISDQELDARKAAWKAPPLKATSGTL 877
             AQ GGPI L+KNGD I ID+ K+ +D ++S +E++ R+  W AP  K   G L
Sbjct: 537  EAQEGGPIGLIKNGDIITIDIGKKRIDTQVSPEEMNDRRKKWTAPAYKVNRGVL 590

>gb|AAK64025.1| putative dihydroxyacid dehydratase [Arabidopsis thaliana]
          Length = 608

 Score =  316 bits (809), Expect = 4e-85
 Identities = 168/294 (57%), Positives = 205/294 (69%), Gaps = 4/294 (1%)
 Frame = +2

Query: 8    MTYKAFENAMVLVMATGGSTNAVLHFIAMARACGVPLTLDDFQRVSDRTPFICDLKPSGR 187
            +T K+  NAMV VMA GGSTNAVLH IA+AR+ G+ LTLDDFQ+VSD  PF+ DLKPSG+
Sbjct: 303  ITPKSLRNAMVSVMALGGSTNAVLHLIAIARSVGLELTLDDFQKVSDAVPFLADLKPSGK 362

Query: 188  YVMEDIHKVGGTPAVLKYLDSKGYINRDCMTVTGKTMGGNLAEVPELRAGQDVVLPVEKP 367
            YVMEDIHK+GGTPAVL+YL   G ++ DCMTVTG+T+  NL  VP L  GQ+++ P+  P
Sbjct: 363  YVMEDIHKIGGTPAVLRYLLELGLMDGDCMTVTGQTLAQNLENVPSLTEGQEIIRPLSNP 422

Query: 368  IKQTGHIQILYGNLAPEGSVAKITGKEGLLFEGEALVFDNEEDMITMVGAAAQQVPRQGG 547
            IK+TGHIQIL G+LAP+GSVAKITGKEGL F G ALVF+ EE M+  + A         G
Sbjct: 423  IKETGHIQILRGDLAPDGSVAKITGKEGLYFSGPALVFEGEESMLAAISADPMSFK---G 479

Query: 548  R*SATR--APRGGPGMPEMLTPTSAIMGAGLGKECALHHRRTLQRRAATAS*SATSR--P 715
                 R   P+GGPGMPEMLTPTSAIMGAGLGKECAL    T  R +  +         P
Sbjct: 480  TVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKECAL---LTDGRFSGGSHGFVVGHICP 536

Query: 716  RAQVGGPIALVKNGDKIVIDVEKRVMDMKISDQELDARKAAWKAPPLKATSGTL 877
             AQ GGPI L+KNGD I ID+ K+ +D ++S +E++ R+  W AP  K   G L
Sbjct: 537  EAQEGGPIGLIKNGDIITIDIGKKRIDTQVSPEEMNDRRKKWTAPAYKVNRGVL 590

>ref|NP_593729.1| putative dihydroxy-acid dehydratase precursor [Schizosaccharomyces
            pombe] gi|1708464|sp|Q10318|ILV3_SCHPO Putative
            dihydroxy-acid dehydratase, mitochondrial precursor (DAD)
            (2,3-dihydroxy acid hydrolyase) gi|7492518|pir||T37858
            probable dihydroxy-acid dehydratase precursor - fission
            yeast (Schizosaccharomyces pombe)
            gi|1213255|emb|CAA93689.1| SPAC17G8.06c
            [Schizosaccharomyces pombe]
          Length = 598

 Score =  290 bits (743), Expect = 2e-77
 Identities = 158/297 (53%), Positives = 202/297 (67%), Gaps = 7/297 (2%)
 Frame = +2

Query: 8    MTYKAFENAMVLVMATGGSTNAVLHFIAMARACGVPLTLDDFQRVSDRTPFICDLKPSGR 187
            MT  AFENAMVL M  GGSTN+VLH IA+A++ G+ LTLDDFQ VS+RTPFI D+KPSG+
Sbjct: 290  MTRSAFENAMVLTMTLGGSTNSVLHLIAIAKSVGITLTLDDFQAVSNRTPFIADMKPSGK 349

Query: 188  YVMEDIHKVGGTPAVLKYLDSKGYINRDCMTVTGKTMGGNLAEVPELRAGQDVVLPVEKP 367
            YVMED+  +GG P+VLKYL ++G I+   +TVTGKT+  NL    +L  GQ ++ P+  P
Sbjct: 350  YVMEDLFAIGGIPSVLKYLHAEGLIDGSNITVTGKTLAENLRGFKDLAEGQKIIRPLSNP 409

Query: 368  IKQTGHIQILYGNLAPEGSVAKITGKEGLLFEGEALVFDNEEDMITMVGAAAQQVPRQGG 547
            IK  GH+++L G+LAPEGSVAKITGKEGL F G+A VFD E D I    AA ++   + G
Sbjct: 410  IKTEGHLRVLRGSLAPEGSVAKITGKEGLNFTGKARVFDAENDFI----AALERGEFKKG 465

Query: 548  R*SAT----RAPRGGPGMPEMLTPTSAIMGAGLGKECALHHRRTLQRRAATAS*S---AT 706
              +        P+GGPGMPEML P+SAIMGAGLGK+ AL        R +  S       
Sbjct: 466  EKTVVIIRFEGPKGGPGMPEMLKPSSAIMGAGLGKDVAL----LTDGRFSGGSHGFLIGH 521

Query: 707  SRPRAQVGGPIALVKNGDKIVIDVEKRVMDMKISDQELDARKAAWKAPPLKATSGTL 877
              P AQVGGPIALV++GD I I+  K  +D+ + ++E+  R++ WKAPPLK   GTL
Sbjct: 522  VDPEAQVGGPIALVQDGDVIEINAVKNTLDLMVDEKEMARRRSVWKAPPLKYQQGTL 578

>ref|ZP_00119642.1| COG0129: Dihydroxyacid dehydratase/phosphogluconate dehydratase
            [Cytophaga hutchinsonii]
          Length = 559

 Score =  286 bits (732), Expect = 3e-76
 Identities = 155/294 (52%), Positives = 199/294 (66%), Gaps = 4/294 (1%)
 Frame = +2

Query: 8    MTYKAFENAMVLVMATGGSTNAVLHFIAMARACGVPLTLDDFQRVSDRTPFICDLKPSGR 187
            MT++AFENA+ +++  GGSTNAV+H IA+A+A GV LT+DDFQR+ + TP + DLKPSG+
Sbjct: 255  MTFEAFENAIRVILVLGGSTNAVMHLIAIAKAAGVKLTIDDFQRIGNTTPLLADLKPSGK 314

Query: 188  YVMEDIHKVGGTPAVLKYLDSKGYINRDCMTVTGKTMGGNLAEVPELRAGQDVVLPVEKP 367
            Y+MED+  +GG P+V++ L     ++ DCMTVTGKT+G NL E  +L   QD++   E P
Sbjct: 315  YMMEDMDAIGGVPSVMRLLAKHNLLHLDCMTVTGKTVGENLKEAQDLPTDQDLMYAWENP 374

Query: 368  IKQTGHIQILYGNLAPEGSVAKITGKEGLLFEGEALVFDNEEDMITMVGAAAQQVPRQGG 547
            IKQTGH+QILYGNLAP+GSVAKITGKEG  FEG A V+D+EE      G  A +V  + G
Sbjct: 375  IKQTGHLQILYGNLAPQGSVAKITGKEGTYFEGPARVYDSEE--AVNKGLEANEV--KSG 430

Query: 548  R*SATR--APRGGPGMPEMLTPTSAIMGAGLGKECALHHRRTLQRRAATAS*SATSR--P 715
                 R   P+GGPGMPEML PT+ +MG GLG ECAL    T  R +            P
Sbjct: 431  EVIVIRYVGPKGGPGMPEMLKPTALLMGLGLGNECAL---ITDGRFSGGTHGFVVGHITP 487

Query: 716  RAQVGGPIALVKNGDKIVIDVEKRVMDMKISDQELDARKAAWKAPPLKATSGTL 877
             A  GG I LVKNGD I ID   RV+++KIS++E+  R+AAW  P  +ATSG L
Sbjct: 488  EATEGGMIGLVKNGDIIRIDAVNRVLEVKISEEEVTKRRAAWVKPAPRATSGVL 541



EST assemble image


clone accession position
1 CM075e02_r AV391649 1 598
2 CM014h04_r AV387377 356 916
3 MX233f07_r BP091091 359 683
4 MX225a07_r BP090513 359 583
5 MX218d12_r BP090078 359 761
6 HC081b04_r AV638044 381 910




Chlamydomonas reinhardtii
Kazusa DNA Research Institute