KCC001074A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC001074A_C01 KCC001074A_c01
GCAGCAGACTAGTCTTTTTGTTTTTTTTTTTTTTACGCGCTGTTAGTTTACATGCCCATA
TGCCGCGTCACCACTATCTCCATGTGTGCTATACGGTACCCCGAACGCCAAATGTCAGTA
CCGCAGCCATGGCAGGTCACGCGAATCCGGCAAAGCAGGTCTGTCGTACCGCTGCTCCTA
TGACACTACTCGCAGTTCCATAATGCGATGCCGGCACAGCACTCAAGCACGTGCACTCAA
GCACGTGCTACTGGGTGAGGCGGCTCTCACGTTGTCTACTCAAATGCGATATTCGAACAT
ATCAATGTATTAAGGCTTTCCTCCTTCATACCACATGCATGGTCCCGAAGTCAGGGCGTG
GACAATTGGAGCCAACGGGTTGCTGATGACTTGATGGCTGCTAACGGCGCACAAAGCCGC
ATACGATGCAAGCAGAACCACCCGGCCACGCACACGCACTCAGGTTGCCTTTGGAGGTTT
CTGCATGGCGTCACATCACGAGAGCCGCTCCTACCGACACAGTTCTCACAGGAGCGGCTG
ACCTCTCTCGTCACCCGCACGTTCCCAGGCCCATCTGTGCC
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001074A_C01 KCC001074A_c01
(581 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00117319.1| hypothetical protein [Cytophaga hutchinsonii] 33 2.9
ref|NP_195741.1| transferase family [Arabidopsis thaliana] gi|11... 33 3.8
emb|CAD90750.1| K2R protein [Cowpox virus] 33 3.8
gb|AAB66506.1| tylactone synthase modules 4 & 5 [Streptomyces fr... 32 8.4
>ref|ZP_00117319.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 358
Score = 33.1 bits (74), Expect = 2.9
Identities = 40/144 (27%), Positives = 59/144 (40%), Gaps = 13/144 (9%)
Frame = +2
Query: 59 YAASPLSPCVLYGTPNAKCQYRSHGRSRESGKAGL--SYRCSY-----DTTRSSIMRCRH 217
Y ASPL V+ +A+ +Y+S R S GL SYR Y T R
Sbjct: 50 YTASPLMQIVVDPVNSAQDRYKSDFRGNFSDLLGLTFSYRSIYIQYAFKTPFGPTEDSRK 109
Query: 218 STQARALKHVLLGEAALTLSTQMRY------SNISMY*GFPPSYHMHGPEVRAWTIGANG 379
A + + + +TL+ + R SN+S Y SY++ P++ IG NG
Sbjct: 110 GRSASTGITLRIRKPRITLAAEYRRYKGYYDSNVSSYDSDTGSYYVR-PDMNYKNIGVNG 168
Query: 380 LLMT*WLLTAHKAAYDASRTTRPR 451
+ W K +Y+A T R
Sbjct: 169 IYNFSW----RKFSYNAPLTYMDR 188
>ref|NP_195741.1| transferase family [Arabidopsis thaliana] gi|11357170|pir||T45961
anthranilate N-benzoyltransferase-like protein -
Arabidopsis thaliana gi|6759444|emb|CAB69849.1|
anthranilate N-benzoyltransferase-like protein
[Arabidopsis thaliana] gi|15912269|gb|AAL08268.1|
AT5g01210/F7J8_190 [Arabidopsis thaliana]
gi|19699232|gb|AAL90982.1| AT5g01210/F7J8_190
[Arabidopsis thaliana]
Length = 475
Score = 32.7 bits (73), Expect = 3.8
Identities = 20/48 (41%), Positives = 28/48 (57%)
Frame = +1
Query: 52 MPICRVTTISMCAIRYPERQMSVPQPWQVTRIRQSRSVVPLLL*HYSQ 195
MP C VT IS C + YPE++ + V+ +R S S +P+L HY Q
Sbjct: 1 MPSCSVTEISKCIV-YPEKKST------VSDLRLSVSDLPMLSCHYIQ 41
>emb|CAD90750.1| K2R protein [Cowpox virus]
Length = 322
Score = 32.7 bits (73), Expect = 3.8
Identities = 18/49 (36%), Positives = 26/49 (52%), Gaps = 6/49 (12%)
Frame = -1
Query: 533 SCENCVGRSGSRDVTP--CRNLQRQPECVCVAGWFC----LHRMRLCAP 405
+C +C G+ S V C N Q + ECVC +G++C + RLC P
Sbjct: 83 TCLSCRGKCSSNQVETKSCSNTQDR-ECVCASGYYCEFEGSNGCRLCVP 130
>gb|AAB66506.1| tylactone synthase modules 4 & 5 [Streptomyces fradiae]
Length = 3729
Score = 31.6 bits (70), Expect = 8.4
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Frame = +2
Query: 59 YAASPLSPCVL--YGTPNAKCQYRSHGRSRESGKAGLSYRCSYDTTRSSIMR-------- 208
+AA L P L YG +A+ R+ ++R +GK L+ +DT R+ ++
Sbjct: 3229 FAAGALRPLPLTAYGIRDARTALRTLSQARHTGKLVLTVPAGFDTHRTVLLTGGTGTLGQ 3288
Query: 209 --CRHSTQARALKHVLL 253
RH ++H+LL
Sbjct: 3289 TLARHLVNRHGVRHLLL 3305
Database: nr
Posted date: Oct 14, 2003 12:26 AM
Number of letters in database: 498,525,298
Number of sequences in database: 1,537,769
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 604,462,038
Number of Sequences: 1537769
Number of extensions: 13535360
Number of successful extensions: 37372
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 35487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37360
length of database: 498,525,298
effective HSP length: 117
effective length of database: 318,606,325
effective search space used: 24214080700
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
CM014g07_r |
AV387413 |
1 |
583 |
2 |
CM030c05_r |
AV397387 |
1 |
609 |
3 |
MX222b10_r |
BP090323 |
35 |
467 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute