KCC001074A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001074A_C01 KCC001074A_c01
GCAGCAGACTAGTCTTTTTGTTTTTTTTTTTTTTACGCGCTGTTAGTTTACATGCCCATA
TGCCGCGTCACCACTATCTCCATGTGTGCTATACGGTACCCCGAACGCCAAATGTCAGTA
CCGCAGCCATGGCAGGTCACGCGAATCCGGCAAAGCAGGTCTGTCGTACCGCTGCTCCTA
TGACACTACTCGCAGTTCCATAATGCGATGCCGGCACAGCACTCAAGCACGTGCACTCAA
GCACGTGCTACTGGGTGAGGCGGCTCTCACGTTGTCTACTCAAATGCGATATTCGAACAT
ATCAATGTATTAAGGCTTTCCTCCTTCATACCACATGCATGGTCCCGAAGTCAGGGCGTG
GACAATTGGAGCCAACGGGTTGCTGATGACTTGATGGCTGCTAACGGCGCACAAAGCCGC
ATACGATGCAAGCAGAACCACCCGGCCACGCACACGCACTCAGGTTGCCTTTGGAGGTTT
CTGCATGGCGTCACATCACGAGAGCCGCTCCTACCGACACAGTTCTCACAGGAGCGGCTG
ACCTCTCTCGTCACCCGCACGTTCCCAGGCCCATCTGTGCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001074A_C01 KCC001074A_c01
         (581 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00117319.1| hypothetical protein [Cytophaga hutchinsonii]       33  2.9
ref|NP_195741.1| transferase family [Arabidopsis thaliana] gi|11...    33  3.8
emb|CAD90750.1| K2R protein [Cowpox virus]                             33  3.8
gb|AAB66506.1| tylactone synthase modules 4 & 5 [Streptomyces fr...    32  8.4

>ref|ZP_00117319.1| hypothetical protein [Cytophaga hutchinsonii]
          Length = 358

 Score = 33.1 bits (74), Expect = 2.9
 Identities = 40/144 (27%), Positives = 59/144 (40%), Gaps = 13/144 (9%)
 Frame = +2

Query: 59  YAASPLSPCVLYGTPNAKCQYRSHGRSRESGKAGL--SYRCSY-----DTTRSSIMRCRH 217
           Y ASPL   V+    +A+ +Y+S  R   S   GL  SYR  Y      T        R 
Sbjct: 50  YTASPLMQIVVDPVNSAQDRYKSDFRGNFSDLLGLTFSYRSIYIQYAFKTPFGPTEDSRK 109

Query: 218 STQARALKHVLLGEAALTLSTQMRY------SNISMY*GFPPSYHMHGPEVRAWTIGANG 379
              A     + + +  +TL+ + R       SN+S Y     SY++  P++    IG NG
Sbjct: 110 GRSASTGITLRIRKPRITLAAEYRRYKGYYDSNVSSYDSDTGSYYVR-PDMNYKNIGVNG 168

Query: 380 LLMT*WLLTAHKAAYDASRTTRPR 451
           +    W     K +Y+A  T   R
Sbjct: 169 IYNFSW----RKFSYNAPLTYMDR 188

>ref|NP_195741.1| transferase family [Arabidopsis thaliana] gi|11357170|pir||T45961
           anthranilate N-benzoyltransferase-like protein -
           Arabidopsis thaliana gi|6759444|emb|CAB69849.1|
           anthranilate N-benzoyltransferase-like protein
           [Arabidopsis thaliana] gi|15912269|gb|AAL08268.1|
           AT5g01210/F7J8_190 [Arabidopsis thaliana]
           gi|19699232|gb|AAL90982.1| AT5g01210/F7J8_190
           [Arabidopsis thaliana]
          Length = 475

 Score = 32.7 bits (73), Expect = 3.8
 Identities = 20/48 (41%), Positives = 28/48 (57%)
 Frame = +1

Query: 52  MPICRVTTISMCAIRYPERQMSVPQPWQVTRIRQSRSVVPLLL*HYSQ 195
           MP C VT IS C + YPE++ +      V+ +R S S +P+L  HY Q
Sbjct: 1   MPSCSVTEISKCIV-YPEKKST------VSDLRLSVSDLPMLSCHYIQ 41

>emb|CAD90750.1| K2R protein [Cowpox virus]
          Length = 322

 Score = 32.7 bits (73), Expect = 3.8
 Identities = 18/49 (36%), Positives = 26/49 (52%), Gaps = 6/49 (12%)
 Frame = -1

Query: 533 SCENCVGRSGSRDVTP--CRNLQRQPECVCVAGWFC----LHRMRLCAP 405
           +C +C G+  S  V    C N Q + ECVC +G++C     +  RLC P
Sbjct: 83  TCLSCRGKCSSNQVETKSCSNTQDR-ECVCASGYYCEFEGSNGCRLCVP 130

>gb|AAB66506.1| tylactone synthase modules 4 & 5 [Streptomyces fradiae]
          Length = 3729

 Score = 31.6 bits (70), Expect = 8.4
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
 Frame = +2

Query: 59   YAASPLSPCVL--YGTPNAKCQYRSHGRSRESGKAGLSYRCSYDTTRSSIMR-------- 208
            +AA  L P  L  YG  +A+   R+  ++R +GK  L+    +DT R+ ++         
Sbjct: 3229 FAAGALRPLPLTAYGIRDARTALRTLSQARHTGKLVLTVPAGFDTHRTVLLTGGTGTLGQ 3288

Query: 209  --CRHSTQARALKHVLL 253
               RH      ++H+LL
Sbjct: 3289 TLARHLVNRHGVRHLLL 3305

  Database: nr
    Posted date:  Oct 14, 2003 12:26 AM
  Number of letters in database: 498,525,298
  Number of sequences in database:  1,537,769
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 604,462,038
Number of Sequences: 1537769
Number of extensions: 13535360
Number of successful extensions: 37372
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 35487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37360
length of database: 498,525,298
effective HSP length: 117
effective length of database: 318,606,325
effective search space used: 24214080700
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 CM014g07_r AV387413 1 583
2 CM030c05_r AV397387 1 609
3 MX222b10_r BP090323 35 467




Chlamydomonas reinhardtii
Kazusa DNA Research Institute