KCC001073A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001073A_C01 KCC001073A_c01
ataccaCAGTAGTGCTCGCTTGCTGCGTTTTGGGTTGGAGGAACAAGACAAATGCAGGGC
GCGCTTGCTCTCAACAGCGGGCTGGGCAAATGCCTGCCAGCCCAGCGCACTCGGCAGGCA
CCGATTGTGCCTTTCGCATTCAAGGCCGGCCCTCTGGTCGCGGCTCGGCGCCCGGCCATC
GCTCGGTCTCCGGTCTCCACTGGCGCGGTGGGCGTGTCCCAGGCGTCCATCGTTGCTGAT
GCCGCCTCCAGCGTCGTGGCTCCGCTGCCCCCATGAGCTGTTTGTGCTCGGAGAGGGTCT
GGAGACTCCCATCCAGCTTATCTACCTGCTGACCCTGCTGGGTTTCCTGTCGGTCGGTGC
CTACCTGGTCGTGCGCCAAGTGCTCATTCGGCGAGAGCTGGACGAGGGCGCGAAGGGCCT
GGGCGAGCGCATCCGCACAGGGGAGGCGACATGCGAGGACTACTACGAGCTGGGTGTGGT
GCTGACCCGCAAGAAGCTGTTCACCCAGGCCACTAAGAACCTGGAGAAGGCCAAGAAGGT
GTGGGACGGCGAGGAGAGCGAGCTGGCGCAGGTGCACAACGCACTGGGCTTCTGCTACTT
CAACATGGAGAAGACCGACATGGCCATTGAGGAGTACCGCCTGGCTGTGGCGCTGCAGCC
CGGATACGTGACCGCCTGGAACAACCTGGGTGACGCACTGGAGAAGGAGCGCCGCTGGCC
TGAGGCGCTGCAGGCCTACCAGGAGGCGCTTACGTACGCGCCCAACAACCGCATCGCCCG
CCAGCGGTGCGACTACTGCAAGGAGAAGGTCAGCCGCCTCACAGTCTGAGAGGGCGGTCC
CGCTGCGGCGTGGAGCCGCGCCTGTTGCGTGGATCTTCGCCTAGTGCATGAAGAAGCTGG
AGAGCTGGAGCGCTAGAGGGCTGGAGCTGGGACCTGGTGGGACCTGATGGCGTGGCCGTG
CATTCTGAGGCGCGCCGTGTGAGCGGATGCAGCTAATGCCTGGGCAGTGCGCCTGGAGGT
GTTGCTGTCGGAGATCCTGCGCCATGCTGCTGCGGGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001073A_C01 KCC001073A_c01
         (1057 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T00774 hypothetical protein T22J18.13 - Arabidopsis thalian...   191  2e-47
ref|NP_850950.1| tetratricopeptide repeat (TPR)-containing prote...   191  2e-47
ref|NP_564178.2| tetratricopeptide repeat (TPR)-containing prote...   191  2e-47
gb|AAM61445.1| unknown [Arabidopsis thaliana]                         183  5e-45
gb|AAM93720.1| putative stress inducible protein [Oryza sativa (...   180  3e-44

>pir||T00774 hypothetical protein T22J18.13 - Arabidopsis thaliana
           gi|3287688|gb|AAC25516.1|AAC25516 Contains similarity to
           ycf37 gene product gb|1001425 from Synechocystis sp.
           genome gb|D63999.  ESTs gb|T43026, gb|R64902, gb|Z18169
           and gb|N37374 come from this gene. [Arabidopsis
           thaliana]
          Length = 299

 Score =  191 bits (484), Expect = 2e-47
 Identities = 92/181 (50%), Positives = 128/181 (69%)
 Frame = +2

Query: 269 PHELFVLGEGLETPIQLIYLLTLLGFLSVGAYLVVRQVLIRRELDEGAKGLGERIRTGEA 448
           P  ++ +GE  E  IQL YLL LLG L VG + V+RQVL+RRELD  AK L E++R+G+A
Sbjct: 105 PEPIYEVGELFELSIQLSYLLLLLGLLGVGTFYVIRQVLVRRELDLSAKELQEQVRSGDA 164

Query: 449 TCEDYYELGVVLTRKKLFTQATKNLEKAKKVWDGEESELAQVHNALGFCYFNMEKTDMAI 628
           +  + +ELG V+ R+K +  A K L++A + WDG++ +LAQV+NALG  Y   +K D  I
Sbjct: 165 SATELFELGAVMLRRKFYPAANKFLQQAIQKWDGDDQDLAQVYNALGVSYVREDKLDKGI 224

Query: 629 EEYRLAVALQPGYVTAWNNLGDALEKERRWPEALQAYQEALTYAPNNRIARQRCDYCKEK 808
            ++ +AV LQPGYVTAWNNLGDA EK++  P AL A++E L + PNN++AR R D  K++
Sbjct: 225 AQFEMAVKLQPGYVTAWNNLGDAYEKKKELPLALNAFEEVLLFDPNNKVARPRRDALKDR 284

Query: 809 V 811
           V
Sbjct: 285 V 285

>ref|NP_850950.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis
           thaliana]
          Length = 301

 Score =  191 bits (484), Expect = 2e-47
 Identities = 92/181 (50%), Positives = 128/181 (69%)
 Frame = +2

Query: 269 PHELFVLGEGLETPIQLIYLLTLLGFLSVGAYLVVRQVLIRRELDEGAKGLGERIRTGEA 448
           P  ++ +GE  E  IQL YLL LLG L VG + V+RQVL+RRELD  AK L E++R+G+A
Sbjct: 107 PEPIYEVGELFELSIQLSYLLLLLGLLGVGTFYVIRQVLVRRELDLSAKELQEQVRSGDA 166

Query: 449 TCEDYYELGVVLTRKKLFTQATKNLEKAKKVWDGEESELAQVHNALGFCYFNMEKTDMAI 628
           +  + +ELG V+ R+K +  A K L++A + WDG++ +LAQV+NALG  Y   +K D  I
Sbjct: 167 SATELFELGAVMLRRKFYPAANKFLQQAIQKWDGDDQDLAQVYNALGVSYVREDKLDKGI 226

Query: 629 EEYRLAVALQPGYVTAWNNLGDALEKERRWPEALQAYQEALTYAPNNRIARQRCDYCKEK 808
            ++ +AV LQPGYVTAWNNLGDA EK++  P AL A++E L + PNN++AR R D  K++
Sbjct: 227 AQFEMAVKLQPGYVTAWNNLGDAYEKKKELPLALNAFEEVLLFDPNNKVARPRRDALKDR 286

Query: 809 V 811
           V
Sbjct: 287 V 287

>ref|NP_564178.2| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis
           thaliana] gi|15294176|gb|AAK95265.1|AF410279_1
           At1g22700/T22J18_13 [Arabidopsis thaliana]
           gi|24797054|gb|AAN64539.1| At1g22700/T22J18_13
           [Arabidopsis thaliana]
          Length = 296

 Score =  191 bits (484), Expect = 2e-47
 Identities = 92/181 (50%), Positives = 128/181 (69%)
 Frame = +2

Query: 269 PHELFVLGEGLETPIQLIYLLTLLGFLSVGAYLVVRQVLIRRELDEGAKGLGERIRTGEA 448
           P  ++ +GE  E  IQL YLL LLG L VG + V+RQVL+RRELD  AK L E++R+G+A
Sbjct: 102 PEPIYEVGELFELSIQLSYLLLLLGLLGVGTFYVIRQVLVRRELDLSAKELQEQVRSGDA 161

Query: 449 TCEDYYELGVVLTRKKLFTQATKNLEKAKKVWDGEESELAQVHNALGFCYFNMEKTDMAI 628
           +  + +ELG V+ R+K +  A K L++A + WDG++ +LAQV+NALG  Y   +K D  I
Sbjct: 162 SATELFELGAVMLRRKFYPAANKFLQQAIQKWDGDDQDLAQVYNALGVSYVREDKLDKGI 221

Query: 629 EEYRLAVALQPGYVTAWNNLGDALEKERRWPEALQAYQEALTYAPNNRIARQRCDYCKEK 808
            ++ +AV LQPGYVTAWNNLGDA EK++  P AL A++E L + PNN++AR R D  K++
Sbjct: 222 AQFEMAVKLQPGYVTAWNNLGDAYEKKKELPLALNAFEEVLLFDPNNKVARPRRDALKDR 281

Query: 809 V 811
           V
Sbjct: 282 V 282

>gb|AAM61445.1| unknown [Arabidopsis thaliana]
          Length = 300

 Score =  183 bits (464), Expect = 5e-45
 Identities = 91/181 (50%), Positives = 126/181 (69%)
 Frame = +2

Query: 269 PHELFVLGEGLETPIQLIYLLTLLGFLSVGAYLVVRQVLIRRELDEGAKGLGERIRTGEA 448
           P  ++ +GE  E  IQL YLL LLG L VG + V+RQVL+RRELD  AK L E++R+G+A
Sbjct: 107 PEPIYEVGELFELSIQLSYLLLLLGLLGVGTFYVIRQVLVRRELDLSAKELQEQVRSGDA 166

Query: 449 TCEDYYELGVVLTRKKLFTQATKNLEKAKKVWDGEESELAQVHNALGFCYFNMEKTDMAI 628
           +  + +ELG V+ RK  +  A K L++A + WDG++ +LAQV+NALG  Y   +K D  I
Sbjct: 167 SATELFELGAVMLRK-FYPAANKFLQQAIQKWDGDDQDLAQVYNALGVSYVREDKLDKGI 225

Query: 629 EEYRLAVALQPGYVTAWNNLGDALEKERRWPEALQAYQEALTYAPNNRIARQRCDYCKEK 808
            ++ +AV LQPGYVTAWNNLGDA EK++  P AL A++E L + PNN++AR   D  K++
Sbjct: 226 AQFEMAVKLQPGYVTAWNNLGDAYEKKKELPLALNAFEEVLLFDPNNKVARPXRDALKDR 285

Query: 809 V 811
           V
Sbjct: 286 V 286

>gb|AAM93720.1| putative stress inducible protein [Oryza sativa (japonica
           cultivar-group)] gi|31432512|gb|AAP54134.1| putative
           stress inducible protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 380

 Score =  180 bits (457), Expect = 3e-44
 Identities = 89/178 (50%), Positives = 125/178 (70%)
 Frame = +2

Query: 278 LFVLGEGLETPIQLIYLLTLLGFLSVGAYLVVRQVLIRRELDEGAKGLGERIRTGEATCE 457
           ++ +GE  E  IQL YLL LLG L  G + V+RQVL+RRELD  AK L E++R+G+A+  
Sbjct: 190 VYEVGELFELGIQLSYLLILLGLLGAGTFFVIRQVLVRRELDLSAKELQEQVRSGDASAT 249

Query: 458 DYYELGVVLTRKKLFTQATKNLEKAKKVWDGEESELAQVHNALGFCYFNMEKTDMAIEEY 637
           +Y+ELG V+ R+K +  A K L++A + WD +E +LAQV+NALG  Y    K D +I+++
Sbjct: 250 EYFELGAVMLRRKFYPAAIKYLQQAIQKWDRDEQDLAQVYNALGVSYKRDNKLDKSIQQF 309

Query: 638 RLAVALQPGYVTAWNNLGDALEKERRWPEALQAYQEALTYAPNNRIARQRCDYCKEKV 811
             AV LQPGYVTAWNNLGDA E+++    AL+A++E L + PNN +AR R D  K++V
Sbjct: 310 EKAVELQPGYVTAWNNLGDAYEQKKDLKSALKAFEEVLLFDPNNTVARPRRDDLKQRV 367



EST assemble image


clone accession position
1 LC040g05_r AV621773 1 365
2 CM014g04_r AV387403 7 629
3 MX003h08_r BP086202 135 528
4 MX001h12_r BP086102 410 814
5 LC089a11_r AV625190 547 1067




Chlamydomonas reinhardtii
Kazusa DNA Research Institute