KCC001069A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001069A_C01 KCC001069A_c01
taagcctatgcaaagccgagacaccagccgacgtatgtgggcgtctggcaggctttccgt
gattttgggatggtggcgagCCCGAAACTTAGTTTTCGCTAGCAACCCTAGCAACTCAGA
ACTATTACGTCTCACTACCGTAGGCTTCAACTTAGCTCCCTTCAAACAGACAGCACCCTG
AGTTTTGTCCAGGCTTGACTCTGCGCGGAAAACGTGCAGCTCTAGGCCGTGTTGTAATTT
CAGTACCTGTTCCGGCTAGGGCTAGGCTCAGCTGACGCACCTTCATGCAGGCTAGCACGC
ACCCGACTCAACTCGGTTCACAGCGCCTCAAGCCGGCCGTCGTCGCCAGGCCTATGAGCA
GCTCTAATTACTCGTCAGGCCGCCCCAAGAGCAGCAACAAGCGCAGCGCGCCAGAGCTGG
AACGGCCGGGCTCGAGTCAGGCGGCACACGCGCACCCATCGCAGATGCAGCCAGAGCCCA
TCCCGCTAAAATACGTGGTTCAAGAGGCTGTAAAGCGGTGGTTTGAGGACACGCTGCTGG
AGGCGCAGCGCGGGGACGTCAAGCAGCAGGCGCTGGTGGGCGAGATGTACAAGGAGGGCT
ACGGCTGCCAGAAGGACGCGCGTGCCGCCAAGGAGTGGTCGGCACAAGGCGGCATCCCGT
GGCTACAAGATGCAGGGCGTGTATTGCGAGCTCTAGATTGGTGTGACTGTGGGCCTGCCA
GA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001069A_C01 KCC001069A_c01
         (722 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO42324.1| unknown protein [Arabidopsis thaliana]                  69  1e-10
ref|NP_196155.2| expressed protein [Arabidopsis thaliana]              69  1e-10
dbj|BAB09979.1| gene_id:K18I23.16~pir||T02500~similar to unknown...    69  1e-10
ref|NP_565889.1| expressed protein [Arabidopsis thaliana] gi|201...    64  2e-09
pir||T02500 hypothetical protein At2g38450 [imported] - Arabidop...    60  3e-08

>gb|AAO42324.1| unknown protein [Arabidopsis thaliana]
          Length = 157

 Score = 68.6 bits (166), Expect = 1e-10
 Identities = 33/77 (42%), Positives = 46/77 (58%), Gaps = 2/77 (2%)
 Frame = +3

Query: 414 ELERPGSSQAAHAHPSQMQP--EPIPLKYVVQEAVKRWFEDTLLEAQRGDVKQQALVGEM 587
           +LE+ GS   ++  P+        +PL  VV++ V+RWF+DTL EA+ GDV  Q LVG+M
Sbjct: 48  KLEKAGSHSGSNPAPASGSDPINRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQM 107

Query: 588 YKEGYGCQKDARAAKEW 638
           Y  GYG  KD    + W
Sbjct: 108 YCSGYGIPKDENKGRAW 124

>ref|NP_196155.2| expressed protein [Arabidopsis thaliana]
          Length = 163

 Score = 68.6 bits (166), Expect = 1e-10
 Identities = 33/77 (42%), Positives = 46/77 (58%), Gaps = 2/77 (2%)
 Frame = +3

Query: 414 ELERPGSSQAAHAHPSQMQP--EPIPLKYVVQEAVKRWFEDTLLEAQRGDVKQQALVGEM 587
           +LE+ GS   ++  P+        +PL  VV++ V+RWF+DTL EA+ GDV  Q LVG+M
Sbjct: 54  KLEKAGSHSGSNPAPASGSDPINRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQM 113

Query: 588 YKEGYGCQKDARAAKEW 638
           Y  GYG  KD    + W
Sbjct: 114 YCSGYGIPKDENKGRAW 130

>dbj|BAB09979.1| gene_id:K18I23.16~pir||T02500~similar to unknown protein
           [Arabidopsis thaliana]
          Length = 179

 Score = 68.6 bits (166), Expect = 1e-10
 Identities = 33/77 (42%), Positives = 46/77 (58%), Gaps = 2/77 (2%)
 Frame = +3

Query: 414 ELERPGSSQAAHAHPSQMQP--EPIPLKYVVQEAVKRWFEDTLLEAQRGDVKQQALVGEM 587
           +LE+ GS   ++  P+        +PL  VV++ V+RWF+DTL EA+ GDV  Q LVG+M
Sbjct: 54  KLEKAGSHSGSNPAPASGSDPINRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQM 113

Query: 588 YKEGYGCQKDARAAKEW 638
           Y  GYG  KD    + W
Sbjct: 114 YCSGYGIPKDENKGRAW 130

>ref|NP_565889.1| expressed protein [Arabidopsis thaliana] gi|20197245|gb|AAC28759.2|
           expressed protein [Arabidopsis thaliana]
          Length = 105

 Score = 63.9 bits (154), Expect = 2e-09
 Identities = 27/53 (50%), Positives = 36/53 (66%)
 Frame = +3

Query: 480 IPLKYVVQEAVKRWFEDTLLEAQRGDVKQQALVGEMYKEGYGCQKDARAAKEW 638
           +PL  VV +  KRWF+DTL EA+ G++  Q L+G+MY  GYG  KDAR  + W
Sbjct: 22  VPLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPKDARKGRLW 74

>pir||T02500 hypothetical protein At2g38450 [imported] - Arabidopsis thaliana
          Length = 131

 Score = 60.5 bits (145), Expect = 3e-08
 Identities = 26/48 (54%), Positives = 34/48 (70%)
 Frame = +3

Query: 480 IPLKYVVQEAVKRWFEDTLLEAQRGDVKQQALVGEMYKEGYGCQKDAR 623
           +PL  VV +  KRWF+DTL EA+ G++  Q L+G+MY  GYG  KDAR
Sbjct: 55  VPLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPKDAR 102



EST assemble image


clone accession position
1 HC020h11_r AV633451 1 466
2 HC046d04_r AV635440 2 513
3 HC055e10_r AV636131 14 575
4 HC090f10_r AV638779 43 611
5 LC085b03_r AV624964 82 403
6 LC046e02_r AV622200 103 459
7 CM014a05_r AV387370 109 647
8 CM088a04_r AV393071 112 597
9 MX030h06_r BP087289 112 526
10 LC028h07_r AV620941 126 543
11 CM016a04_r AV387491 134 744
12 CM033c04_r AV388377 136 712
13 CM030b04_r AV397408 145 755
14 CM032f06_r AV388488 147 659
15 CM098e11_r AV392897 158 618




Chlamydomonas reinhardtii
Kazusa DNA Research Institute