Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001065A_C01 KCC001065A_c01
(516 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176363.1| RNA polymerase II subunit (hsRPB10) -related [A... 127 6e-29
sp|Q39290|RPBX_BRANA DNA-directed RNA polymerase II 8.2 kDa poly... 124 7e-28
ref|NP_849640.1| RNA polymerase II subunit Rpb10 -related [Arabi... 123 2e-27
ref|NP_066951.1| DNA directed RNA polymerase II polypeptide L; p... 115 4e-25
ref|XP_320749.1| ENSANGP00000020255 [Anopheles gambiae] gi|21288... 115 4e-25
>ref|NP_176363.1| RNA polymerase II subunit (hsRPB10) -related [Arabidopsis thaliana]
gi|11134747|sp|Q9SYA6|RPBX_ARATH DNA-directed RNA
polymerase II 8.2 kDa polypeptide (RPB10) (RP10) (ABC10)
gi|25314518|pir||F96642 protein Putative RNA polymerase
II subunit Rpb10 [imported] - Arabidopsis thaliana
gi|4508082|gb|AAD21426.1| Putative RNA polymerase II
subunit Rpb10 [Arabidopsis thaliana]
Length = 71
Score = 127 bits (320), Expect = 6e-29
Identities = 57/68 (83%), Positives = 64/68 (93%)
Frame = +1
Query: 238 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 417
MI+PVRCFTCGKVIGNKWDTYL+LLQA Y+E +ALD LGL RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 418 NYNTLERA 441
NYNT+E++
Sbjct: 61 NYNTMEKS 68
>sp|Q39290|RPBX_BRANA DNA-directed RNA polymerase II 8.2 kDa polypeptide (RPB10) (RP10)
(ABC10) gi|7447619|pir||T07852 probable DNA-directed RNA
polymerase (EC 2.7.7.6) II chain RPB10 - rape
gi|533690|gb|AAA21279.1| RNA polymerase II subunit RPB10
homolog; similar to yeast RNA polymerase II subunit
RPB10, Swiss-Prot Accession Number P22139
Length = 71
Score = 124 bits (311), Expect = 7e-28
Identities = 57/68 (83%), Positives = 61/68 (88%)
Frame = +1
Query: 238 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 417
MIIPVRCFTCGKVIGNKWD YLDLLQ Y+E +ALD L L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 60
Query: 418 NYNTLERA 441
NYNTLE++
Sbjct: 61 NYNTLEKS 68
>ref|NP_849640.1| RNA polymerase II subunit Rpb10 -related [Arabidopsis thaliana]
gi|21537033|gb|AAM61374.1| RNA polymerase II subunit
(hsRPB10), putative [Arabidopsis thaliana]
gi|26451764|dbj|BAC42977.1| putative RNA polymerase II
subunit hsRPB10 [Arabidopsis thaliana]
Length = 71
Score = 123 bits (308), Expect = 2e-27
Identities = 57/68 (83%), Positives = 61/68 (88%)
Frame = +1
Query: 238 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 417
MIIPVRCFTCGKVIGNKWD YLDLLQ Y+E +ALD L L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60
Query: 418 NYNTLERA 441
NYNTLE++
Sbjct: 61 NYNTLEKS 68
>ref|NP_066951.1| DNA directed RNA polymerase II polypeptide L; polymerase (RNA) II
(DNA directed) polypeptide L (7.6kD); RNA polymerase II
subunit [Homo sapiens] gi|1710660|sp|P52436|RPBX_HUMAN
DNA-directed RNA polymerase II 7.6 kDa polypeptide
(RPB10) (RPB7.6) (RPABC5) gi|1017825|gb|AAA91459.1| RNA
polymerase II subunit gi|12846865|dbj|BAB27338.1|
unnamed protein product [Mus musculus]
gi|13543492|gb|AAH05903.1| DNA directed RNA polymerase
II polypeptide L [Homo sapiens]
gi|17391429|gb|AAH18649.1| DNA directed RNA polymerase
II polypeptide L [Homo sapiens] gi|1588297|prf||2208312A
RNA polymerase:SUBUNIT=7.6kD
Length = 67
Score = 115 bits (287), Expect = 4e-25
Identities = 51/67 (76%), Positives = 58/67 (86%)
Frame = +1
Query: 238 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 417
MIIPVRCFTCGK++GNKW+ YL LLQA Y+E +ALD LGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 418 NYNTLER 438
NY LE+
Sbjct: 61 NYAPLEK 67
>ref|XP_320749.1| ENSANGP00000020255 [Anopheles gambiae] gi|21288105|gb|EAA00426.1|
ENSANGP00000020255 [Anopheles gambiae str. PEST]
Length = 87
Score = 115 bits (287), Expect = 4e-25
Identities = 53/67 (79%), Positives = 58/67 (86%)
Frame = +1
Query: 238 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 417
MIIPVRCFTCGKVIGNKW+ YL LLQA Y+E +ALD LGL RYCCRRML+ HVDLIEKLL
Sbjct: 21 MIIPVRCFTCGKVIGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 80
Query: 418 NYNTLER 438
NY LE+
Sbjct: 81 NYAPLEK 87
