KCC001064A_c02
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001064A_C02 KCC001064A_c02
ACACCTCCGGGGTACATCCGCCCCGACCAAGATGGATCGCGAGAAGCTCAGCAAGATGGC
CGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGGAAGAAGAAGGCCGTGCACAA
GACCACCTCCACTGACGACAAGCGGTTGCAAAACACCCTCAAGCGCCTGGGCGTGAACAC
CATCCCCGGCATCGAGGAGGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAA
CCCCAAGGCTGCAACGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACC
CAGAAGAAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGGATGGGGCCAGACAGCCT
GGTGCACCTGAAGAAGATGATGCAGCAGCTGGGCGCTGGCATGCCCGGTGGCCTGGGCAG
CATGCTGGGCGGCCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGA
CGACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCGCGCTACG
GCGTCGCAGCCTGGCTGCCGCCGGCCAACGAGGCTGCGTGGCTTGCTCGGGAGGGGAGCC
AGCGGCCCGGAGGCAGGCGCGCAGGCGGATAGATGGCAGCAGCATTGGGGCGCGGCGGGT
GCGGGCTCCGGAGGCGGCGCGGCCGGAGCAGCGGCAGTGGCTGCTGCTGCAGTTTCTGCG
CAGCAGAAATGCGACGGTGGCCGCGTGCTGCTTCTCTGGCGGCCGGAGCGGAGGCGTGTG
CGTGTCAGGAGCAGCAGTAGCAGCTCGAGGCGTCGGCGGGCGCCCAGCAGCAGCCACGGA
GCGGGGCACGACCCGCTTCCGTGGTGCGTTGCGGGCGGAGGGCAGGCGCCGGTGCCCATT
GGCACGCGCAGGGGGGCTTCATGCAGGAGCAGGGTCCGTGCACGCGCGCGTCTGCGCGGA
AGTGCAAATCGCGGCGGCAGAGCGCGGGGGCGACACAGTGCTTGTGCGGACCAGGGGCCC
C


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001064A_C02 KCC001064A_c02
         (1021 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM91875.1| putative transcription factor [Oryza sativa (japo...   161  2e-38
gb|AAO72651.1| putative transcription factor BTF3 [Oryza sativa ...   126  2e-34
gb|AAO72645.1| putative transcription factor BTF3 [Oryza sativa ...   147  2e-34
gb|AAN61483.1| Putative transcription factor [Oryza sativa (japo...   147  2e-34
gb|AAO20058.1| putative transcription factor [Oryza sativa (japo...   145  1e-33

>gb|AAM91875.1| putative transcription factor [Oryza sativa (japonica
           cultivar-group)] gi|31432723|gb|AAP54321.1| putative
           transcription factor [Oryza sativa (japonica
           cultivar-group)]
          Length = 164

 Score =  161 bits (407), Expect = 2e-38
 Identities = 92/166 (55%), Positives = 114/166 (68%), Gaps = 2/166 (1%)
 Frame = +2

Query: 32  MDREKLSKMAGAVRTGGKGSVRRKKKAVHKTTSTDDKRLQNTLKRLGVNTIPGIEEVNIF 211
           M+ +KL KMAGAVRTGGKGSVRRKKKAVHKTT+TDDKRLQ+TLKR+GVNTIPGIEEVNIF
Sbjct: 1   MNVDKLKKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRVGVNTIPGIEEVNIF 60

Query: 212 KDDSVIHFVNPKAATRRLPPTPTSSAALRPRRRSRSCCPAS*TRMGPDSLVHLKKMMQQL 391
           KDD VI F+NPK        T   S   +  ++ +   P+   ++GPD+L +L+++ +Q 
Sbjct: 61  KDDVVIQFLNPKVQASIGANTWVVSGTPQ-TKKLQDLLPSIINQLGPDNLDNLRRLAEQF 119

Query: 392 GAGMPGGLGSMLGGLGMPSAGAPAAGGDDDDVPDLV--DNFDNAAE 523
               PG  G   G      A A AA GDDDDVP+LV  + F+ AAE
Sbjct: 120 QKQAPGASGEEAG------ASAGAAQGDDDDVPELVPGETFEEAAE 159

>gb|AAO72651.1| putative transcription factor BTF3 [Oryza sativa (japonica
           cultivar-group)]
          Length = 119

 Score =  126 bits (317), Expect(2) = 2e-34
 Identities = 62/72 (86%), Positives = 68/72 (94%)
 Frame = +2

Query: 32  MDREKLSKMAGAVRTGGKGSVRRKKKAVHKTTSTDDKRLQNTLKRLGVNTIPGIEEVNIF 211
           M+ +KL KMAGAVRTGGKGSVRRKKKAVHKTT+TDDKRLQ+TLKR+GVNTIPGIEEVNIF
Sbjct: 1   MNVDKLKKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRVGVNTIPGIEEVNIF 60

Query: 212 KDDSVIHFVNPK 247
           KDD VI F+NPK
Sbjct: 61  KDDVVIQFLNPK 72

 Score = 42.7 bits (99), Expect(2) = 2e-34
 Identities = 22/40 (55%), Positives = 28/40 (70%)
 Frame = +1

Query: 256 ASIAANTYVISGPSTQKKIQELLPGILNQDGARQPGAPEE 375
           ASI ANT+V+SG    KK+Q+LLP I+NQ G     +PEE
Sbjct: 75  ASIGANTWVVSGTPQTKKLQDLLPSIINQLGPAH-SSPEE 113

>gb|AAO72645.1| putative transcription factor BTF3 [Oryza sativa (japonica
           cultivar-group)]
          Length = 175

 Score =  147 bits (372), Expect = 2e-34
 Identities = 88/168 (52%), Positives = 110/168 (65%), Gaps = 4/168 (2%)
 Frame = +2

Query: 32  MDREKLSKMAGAVRTGGKGSVRRKKKAVHKTTSTDDKRLQNTLKRLGVNTIPGIEEVNIF 211
           M+ +KL KMAGAVRTGGKGS+RRKKKAVHKTT+TDDKRLQ+TLKR+GVN IPGIEEVNIF
Sbjct: 1   MNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRVGVNNIPGIEEVNIF 60

Query: 212 KDDSVIHFVNPKAATRRLPPTPTSSAALRPRRRSRSCCPAS*TRMGPDSLVHLKKMMQQL 391
           KDD VI F NPK        T   S   +  ++ +   P    ++GPD+L +L+++ +Q 
Sbjct: 61  KDDVVIQFQNPKVQASIGANTWVVSGTPQ-TKKLQDLLPTIINQLGPDNLDNLRRLAEQF 119

Query: 392 GAGMPGGLGSMLGGLGMPSAGAPA--AGGDDDDVPDLV--DNFDNAAE 523
              +PG             AGA A  A  DDDDVP+LV  + F+ AAE
Sbjct: 120 QKQVPGA-----------EAGASAGNAQDDDDDVPELVPGETFEEAAE 156

>gb|AAN61483.1| Putative transcription factor [Oryza sativa (japonica
           cultivar-group)]
          Length = 615

 Score =  147 bits (372), Expect = 2e-34
 Identities = 88/168 (52%), Positives = 110/168 (65%), Gaps = 4/168 (2%)
 Frame = +2

Query: 32  MDREKLSKMAGAVRTGGKGSVRRKKKAVHKTTSTDDKRLQNTLKRLGVNTIPGIEEVNIF 211
           M+ +KL KMAGAVRTGGKGS+RRKKKAVHKTT+TDDKRLQ+TLKR+GVN IPGIEEVNIF
Sbjct: 441 MNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRVGVNNIPGIEEVNIF 500

Query: 212 KDDSVIHFVNPKAATRRLPPTPTSSAALRPRRRSRSCCPAS*TRMGPDSLVHLKKMMQQL 391
           KDD VI F NPK        T   S   +  ++ +   P    ++GPD+L +L+++ +Q 
Sbjct: 501 KDDVVIQFQNPKVQASIGANTWVVSGTPQ-TKKLQDLLPTIINQLGPDNLDNLRRLAEQF 559

Query: 392 GAGMPGGLGSMLGGLGMPSAGAPA--AGGDDDDVPDLV--DNFDNAAE 523
              +PG             AGA A  A  DDDDVP+LV  + F+ AAE
Sbjct: 560 QKQVPGA-----------EAGASAGNAQDDDDDVPELVPGETFEEAAE 596

>gb|AAO20058.1| putative transcription factor [Oryza sativa (japonica
           cultivar-group)]
          Length = 158

 Score =  145 bits (365), Expect = 1e-33
 Identities = 83/166 (50%), Positives = 109/166 (65%), Gaps = 2/166 (1%)
 Frame = +2

Query: 32  MDREKLSKMAGAVRTGGKGSVRRKKKAVHKTTSTDDKRLQNTLKRLGVNTIPGIEEVNIF 211
           M++E+L KMAGAVRTGGKG+VRRKKKAVHKT +TDDKRLQ+TLKR+GVNTIP IEEVNIF
Sbjct: 1   MNKERLMKMAGAVRTGGKGTVRRKKKAVHKTGTTDDKRLQSTLKRVGVNTIPAIEEVNIF 60

Query: 212 KDDSVIHFVNPKAATRRLPPTPTSSAALRPRRRSRSCCPAS*TRMGPDSLVHLKKMMQQL 391
           KDD VI FVNPK        T   S + +  ++ +   P    ++GPD++ HLK++ ++ 
Sbjct: 61  KDDLVIQFVNPKVQASIAANTWVVSGSPQ-TKKLQDVLPGIINQLGPDNMEHLKRIAEE- 118

Query: 392 GAGMPGGLGSMLGGLGMPSAGAPAAGGDDDDVPDLV--DNFDNAAE 523
                     M   +    A A A   +DDDVP+LV  +NF+  A+
Sbjct: 119 ----------MQKQVAAAGATAQAKEENDDDVPELVPGENFEEVAQ 154



EST assemble image


clone accession position
1 MX217f05_r BP090020 1 409
2 LCL040f11_r AV628370 75 396
3 LC081e10_r AV624713 78 628
4 MX242g08_r BP091692 79 557
5 MX229b10_r BP090791 81 377
6 CM069f11_r AV391212 81 702
7 MX048f04_r BP087985 81 423
8 CM076d05_r AV391679 81 723
9 HCL089b04_r AV644470 82 561
10 HCL023e02_r AV640851 82 505
11 HC045d04_r AV635358 82 584
12 HC009g02_r AV632563 82 506
13 HC049a01_r AV635642 82 559
14 HC065c10_r AV636865 86 550
15 HC070g07_r AV637260 86 542
16 HC094d06_r AV639052 89 507
17 LC060g03_r AV623230 89 634
18 LC022f04_r AV620472 98 625
19 HCL013d10_r AV640268 98 554
20 HC024g07_r AV633748 101 559
21 LC057a07_r AV622955 105 621
22 MX252h08_r BP092344 121 557
23 MX218f09_r BP090092 151 568
24 CM097g01_r AV393201 185 718
25 LC021h08_r AV620416 198 741
26 MX248a01_r BP091991 212 507
27 CM100a03_r AV392813 437 806
28 CM070f09_r AV391297 504 1143
29 MX251h02_r BP092269 548 855
30 HCL099c10_r AV645182 627 1108
31 CM013g04_r AV387064 642 1105




Chlamydomonas reinhardtii
Kazusa DNA Research Institute