KCC001063A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001063A_C01 KCC001063A_c01
ttcggcacgaggggtgtaccccacaggctgccggtatgcgcaagcaagggcatctgcaaa
gatggcttcggcggctggctTCATTTCTGGGATTATTGTCGGGCGGGCGTGGGTTGTTCA
CATACACACATAACGGCACGTTTGTGACGGCGTTGACTATGTTTTGCACATATGGTTCAT
CAGCAAGACTGCAACGCATATCGCGCAGTGATACGCACGCGGCAATGAGGCAAGCGGCGC
TGTTCTGGGACACGATTCTTTGCGCTGGGCTAGTAGAATGACATCGGCGCGAATGGATTA
ACATGCACAGATGGGTGGGCACTTGAGCCCTTGTGAATAAGTTTATATCTCCCAAGCCTG
AAACGGATAAGGTACGGTACATGAAAGGACTGGGCAGGGCGCGGGCCGGGCCGGGCCGGG
AGCCATTCAGCTGCATACGGTATGCTGAGAATAATTATCTTCTTTCCGGGCTGAGCCGCA
GTTTATGTCTTTGGGTGTGCGCGTATGTGTGTGGGGTCTTCTGCGTCCTAGAAGACGCGA
GGCCTCCAGCCGCCCATTGTGTGATGCCTCGTGCCGGTGGATCAGGAGGAGTCCATATGC
CAACCTAATGGGGCTAGGCCCCATGCTGCTCGTCAGAATGGCGGTTTGCCGCCTGGCAGG
GCCTTGTCTGTGACGCTTGCCCGGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001063A_C01 KCC001063A_c01
         (685 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T32445 hypothetical protein H42K12.2 - Caenorhabditis elegans     36  0.62
ref|NP_508241.1| predicted CDS, putative protein (XB935) [Caenor...    36  0.62
gb|AAK82438.1|AC091247_5 putative polyprotein [Oryza sativa] gi|...    35  1.4
dbj|BAC31790.1| unnamed protein product [Mus musculus]                 34  2.4
ref|ZP_00084435.1| COG0596: Predicted hydrolases or acyltransfer...    33  3.1

>pir||T32445 hypothetical protein H42K12.2 - Caenorhabditis elegans
          Length = 331

 Score = 35.8 bits (81), Expect = 0.62
 Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -1

Query: 559 QWAAGGLASSRTQKTPHTYAHTQ-RHKLRLSPERR 458
           QWA GG+A +  +  PHT+ HT   H + LSPERR
Sbjct: 101 QWA-GGMAKTTHRLVPHTHTHTHPTHNVCLSPERR 134

>ref|NP_508241.1| predicted CDS, putative protein (XB935) [Caenorhabditis elegans]
           gi|14625191|gb|AAK71372.1|AF026207_2 Hypothetical
           protein H42K12.2 [Caenorhabditis elegans]
          Length = 233

 Score = 35.8 bits (81), Expect = 0.62
 Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -1

Query: 559 QWAAGGLASSRTQKTPHTYAHTQ-RHKLRLSPERR 458
           QWA GG+A +  +  PHT+ HT   H + LSPERR
Sbjct: 101 QWA-GGMAKTTHRLVPHTHTHTHPTHNVCLSPERR 134

>gb|AAK82438.1|AC091247_5 putative polyprotein [Oryza sativa]
           gi|18855049|gb|AAL79741.1|AC096687_5 putative
           polyprotein [Oryza sativa]
          Length = 377

 Score = 34.7 bits (78), Expect = 1.4
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = -3

Query: 479 AAQPGKKIIILSIPYAAEWLPARPGPRPAQSFHVPYLIRFRLG--RYKL-IHKGSSAHPS 309
           A Q GK +++   PYA + + +RP P+ A  +  P+ I   +G   Y+L +  GS  HP 
Sbjct: 221 AFQVGKSVLLKLQPYAYKSVVSRPFPKLAFKYFGPFEIEASVGSMTYRLKLPAGSLIHPV 280

Query: 308 VHVN 297
            HV+
Sbjct: 281 FHVS 284

>dbj|BAC31790.1| unnamed protein product [Mus musculus]
          Length = 146

 Score = 33.9 bits (76), Expect = 2.4
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = -2

Query: 579 HRHEASHNGRLEASRLLGRRRPHTHTRTPKDINCGSARKE--DNYSQHTVCS*MAPGPAR 406
           H H    +  + A+  L    P   TR P+    G+A  E  ++ S+H  CS   PGP  
Sbjct: 47  HSHPDGLSLVVRAAAALAGPVPRRRTRGPRRSGAGAAGTETSESRSEHARCSTSLPGPRA 106

Query: 405 PAPCPVLSCTVPYP 364
           P P    +   P P
Sbjct: 107 PRPPAARAWPCPRP 120

>ref|ZP_00084435.1| COG0596: Predicted hydrolases or acyltransferases (alpha/beta
           hydrolase superfamily) [Pseudomonas fluorescens PfO-1]
          Length = 270

 Score = 33.5 bits (75), Expect = 3.1
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 157 VNAVTNVPLCVYVNNPRPPDNNPRNEASRRSHLCRCPCLRIPAA 26
           +NA T + +C   + PRPP     +EA   + L  CPC+ +P A
Sbjct: 208 LNAATTLVVCGDQDKPRPP-----SEAREMAELIGCPCVLVPEA 246



EST assemble image


clone accession position
1 CM049c05_r AV389646 1 323
2 CM013g03_r AV387059 87 589
3 CM081d02_r AV391888 87 685
4 LCL099g12_r AV631785 166 522




Chlamydomonas reinhardtii
Kazusa DNA Research Institute