KCC001062A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001062A_C01 KCC001062A_c01
atcgtgttaaactcagtgaATTTGCGAGACCTAAAGTTCTTATTCTATCAGCATAGCAAT
GGCCCTGCGCGCTGCTTCCTCTGTCCGCGCGACTGCTTCCAGCGGTCGCGCCTCGCGCCG
CTGCGCTGTCGTCGTTCGCGCTACCGCTGAGCCCATCACTGAGAGCAAGAACCTGGAGAT
TATGCGCAAGTTCTCGGAGCAGTACGCCAAGCGCTCCGGCACCTACTTCTGCGTGGACAA
GTCGGTGACCGCTGTGGTCATTCAGGGGCTTGCTGAGCACAAAGACACGCTCGGCGCTGC
GCTGTGCCCTTGCCGCCACTACGACGATAAGGAGGCTGAGGCTGCTCAGGGCTACTGGAA
CTGCCCCTGCGTGCCCATGCGCGAGCGCAAGGAGTGCCACTGCATGCTGTTCCTCACGGA
GGACAACGACTTCGCTGGGCGGGAGCAGACGATCACCATGGACGAGCTGAAGTCTGGGAT
CACCGGCATGCAATAATAGCTGGGCGCGGACGCAGGAGGCTGGGGCGGGCACAGGCGTTT
ACAGTAGTGCTGTGGCCGTGCCCCGTCTAACGGGTGGTGCCGCGCTCGCCCGGGAGCGCT
TTGGCGAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001062A_C01 KCC001062A_c01
         (608 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|O49856|FTRC_SOYBN Ferredoxin-thioredoxin reductase catalytic ...   204  6e-52
sp|P41348|FTRC_SPIOL Ferredoxin-thioredoxin reductase catalytic ...   204  6e-52
sp|P41347|FTRC_MAIZE Ferredoxin-thioredoxin reductase catalytic ...   198  4e-50
ref|NP_178547.1| ferredoxin-thioredoxin reductase -related [Arab...   197  1e-49
emb|CAC39620.1| ferredoxin-thioredoxin-reductase catalytic subun...   194  6e-49

>sp|O49856|FTRC_SOYBN Ferredoxin-thioredoxin reductase catalytic chain, chloroplast
           precursor (FTR-C) gi|7432748|pir||T07147
           ferredoxin-thioredoxin reductase (EC 1.18.-.-) catalytic
           chain B precursor - soybean gi|2765445|emb|CAA75356.1|
           ferredoxin thioredoxin reductase precursor [Glycine max]
          Length = 144

 Score =  204 bits (520), Expect = 6e-52
 Identities = 99/139 (71%), Positives = 112/139 (80%)
 Frame = +2

Query: 74  ASSVRATASSGRASRRCAVVVRATAEPITESKNLEIMRKFSEQYAKRSGTYFCVDKSVTA 253
           A +V + A+  R  R    VVRA AEP    K++EIMRKFSEQYA++SGTYFCVDK VT+
Sbjct: 9   AVAVPSVATPFRRHRN-PFVVRAQAEP--SDKSVEIMRKFSEQYARKSGTYFCVDKGVTS 65

Query: 254 VVIQGLAEHKDTLGAALCPCRHYDDKEAEAAQGYWNCPCVPMRERKECHCMLFLTEDNDF 433
           VVI+GLA+HKDTLGA LCPCRHYDDK AE AQG+WNCPCVPMRERKECHCMLFLT DNDF
Sbjct: 66  VVIKGLADHKDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPDNDF 125

Query: 434 AGREQTITMDELKSGITGM 490
           AG EQTIT+DE+K     M
Sbjct: 126 AGNEQTITLDEIKESTANM 144

>sp|P41348|FTRC_SPIOL Ferredoxin-thioredoxin reductase catalytic chain, chloroplast
           precursor (FTR-C) (Ferredoxin-thioredoxin reductase
           subunit B) (FTR-B) (B2) gi|2144357|pir||RDSPTB
           ferredoxin-thioredoxin reductase (EC 1.18.-.-) chain B
           precursor - spinach gi|1103726|emb|CAA52867.1|
           ferredoxin-thioredoxin reductase (FTR) [Spinacia
           oleracea]
          Length = 144

 Score =  204 bits (520), Expect = 6e-52
 Identities = 98/144 (68%), Positives = 119/144 (82%), Gaps = 1/144 (0%)
 Frame = +2

Query: 62  ALRAASSVRATASSGRAS-RRCAVVVRATAEPITESKNLEIMRKFSEQYAKRSGTYFCVD 238
           AL+A+ +     SS  AS RR + V+RA A+P    K++E+MRKFSEQ+ ++S TYFCVD
Sbjct: 3   ALQASIAYSFPISSPAASPRRFSRVIRAQADP--SDKSMEVMRKFSEQFCRKSDTYFCVD 60

Query: 239 KSVTAVVIQGLAEHKDTLGAALCPCRHYDDKEAEAAQGYWNCPCVPMRERKECHCMLFLT 418
           KSVTAVVI+GLA+H+DTLGA LCPCRHYDDKEAEA QG+WNCPCVPMRERKECHCMLFLT
Sbjct: 61  KSVTAVVIKGLADHRDTLGAPLCPCRHYDDKEAEAKQGFWNCPCVPMRERKECHCMLFLT 120

Query: 419 EDNDFAGREQTITMDELKSGITGM 490
            DNDFAG+EQTIT+DE++   + M
Sbjct: 121 PDNDFAGKEQTITLDEIREVTSNM 144

>sp|P41347|FTRC_MAIZE Ferredoxin-thioredoxin reductase catalytic chain, chloroplast
           precursor (FTR-C) (Ferredoxin-thioredoxin reductase
           subunit B) (FTR-B)
          Length = 152

 Score =  198 bits (504), Expect = 4e-50
 Identities = 89/128 (69%), Positives = 108/128 (83%)
 Frame = +2

Query: 89  ATASSGRASRRCAVVVRATAEPITESKNLEIMRKFSEQYAKRSGTYFCVDKSVTAVVIQG 268
           +TA+ GR  RRCAV  +A     +  K++E+MRKFSEQYA+RS T+FC DK+VTAVVI+G
Sbjct: 20  STATRGRP-RRCAVRAQAAGADASNDKSVEVMRKFSEQYARRSNTFFCADKTVTAVVIKG 78

Query: 269 LAEHKDTLGAALCPCRHYDDKEAEAAQGYWNCPCVPMRERKECHCMLFLTEDNDFAGREQ 448
           LA+H+DTLGA LCPCRHYDDK AE AQG+WNCPCVPMRERKECHCMLFLT DNDFAG++Q
Sbjct: 79  LADHRDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPDNDFAGKDQ 138

Query: 449 TITMDELK 472
            I+ +E+K
Sbjct: 139 VISFEEIK 146

>ref|NP_178547.1| ferredoxin-thioredoxin reductase -related [Arabidopsis thaliana]
           gi|25285431|pir||D84460 probable ferredoxin-thioredoxin
           reductase [imported] - Arabidopsis thaliana
           gi|4544427|gb|AAD22336.1| putative
           ferredoxin-thioredoxin reductase [Arabidopsis thaliana]
           gi|17380642|gb|AAL36151.1| putative
           ferredoxin-thioredoxin reductase [Arabidopsis thaliana]
           gi|21436083|gb|AAM51242.1| putative
           ferredoxin-thioredoxin reductase [Arabidopsis thaliana]
           gi|21593637|gb|AAM65604.1| putative
           ferredoxin-thioredoxin reductase [Arabidopsis thaliana]
          Length = 146

 Score =  197 bits (501), Expect = 1e-49
 Identities = 90/120 (75%), Positives = 101/120 (84%)
 Frame = +2

Query: 131 VVRATAEPITESKNLEIMRKFSEQYAKRSGTYFCVDKSVTAVVIQGLAEHKDTLGAALCP 310
           V+RA  EP    K++EIMRKFSEQYA+RSGTYFCVDK VT+VVI+GLAEHKD+ GA LCP
Sbjct: 29  VIRAKTEP--SEKSVEIMRKFSEQYARRSGTYFCVDKGVTSVVIKGLAEHKDSYGAPLCP 86

Query: 311 CRHYDDKEAEAAQGYWNCPCVPMRERKECHCMLFLTEDNDFAGREQTITMDELKSGITGM 490
           CRHYDDK AE  QG+WNCPCVPMRERKECHCMLFLT DNDFAG++QTIT DE+K     M
Sbjct: 87  CRHYDDKAAEVGQGFWNCPCVPMRERKECHCMLFLTPDNDFAGKDQTITSDEIKETTANM 146

>emb|CAC39620.1| ferredoxin-thioredoxin-reductase catalytic subunit B [Solanum
           tuberosum]
          Length = 148

 Score =  194 bits (494), Expect = 6e-49
 Identities = 92/127 (72%), Positives = 104/127 (81%)
 Frame = +2

Query: 110 ASRRCAVVVRATAEPITESKNLEIMRKFSEQYAKRSGTYFCVDKSVTAVVIQGLAEHKDT 289
           ++ RC  V  A  EP    K++EIMRKFSEQYA+RS TYFC+DK VT+VVI+GLAEHKDT
Sbjct: 26  STHRCLTV--AKMEP--SEKSVEIMRKFSEQYARRSETYFCMDKGVTSVVIKGLAEHKDT 81

Query: 290 LGAALCPCRHYDDKEAEAAQGYWNCPCVPMRERKECHCMLFLTEDNDFAGREQTITMDEL 469
           LGA LCPCRHYDDK AEA QG+WNCPCVPMRERKECHCMLFLT DNDFAG EQTI+M+E+
Sbjct: 82  LGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPDNDFAGEEQTISMEEI 141

Query: 470 KSGITGM 490
           K     M
Sbjct: 142 KETTANM 148



EST assemble image


clone accession position
1 LC077e02_r AV624416 1 534
2 CM088h10_r AV393066 13 556
3 HC032h11_r AV634404 22 502
4 HC028g01_r AV634060 24 538
5 HC004b11_r AV632120 24 499
6 HCL031a12_r AV641287 24 379
7 HC092f09_r AV638925 24 393
8 LC047e02_r AV622276 25 540
9 LC043h02_r AV622011 25 557
10 LC006f12_r AV619326 25 454
11 MX254g03_r BP092478 25 512
12 LC029b08_r AV620954 25 511
13 LC047h08_r AV622307 25 509
14 LC097c06_r AV625743 25 484
15 LC033e07_r AV621259 25 536
16 LC009c05_r AV619506 25 457
17 LC055b04_r AV622824 26 556
18 MX258d07_r BP092735 26 523
19 LC026b03_r AV620731 28 527
20 MX230g07_r BP090902 30 430
21 LC031c06_r AV621103 31 610
22 LC033h03_r AV621284 31 555
23 LC052g04_r AV622667 33 499
24 HC052f03_r AV635913 39 446
25 CM013f06_r AV387069 39 394
26 MX231a11_r BP090923 51 440




Chlamydomonas reinhardtii
Kazusa DNA Research Institute