KCC001058A_c01_2
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001058A_C01_2 KCC001058A_c01_2
TATGCTCTCGTGGCGTATGTGTGCTGCAGTTTCAATTAAAGGCAGCTACCTGGTTGATCC
TGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTATAAACTGCT
TATACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTATTTGATGGTACCTAC
TACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCGCACAACCCGACTTCTGGAAG
GGTCGTATTTATTAGATAAAAGGCCAGCCGGGCTCTGCCCGACCTGCGGTGAATCATGAT
AACTTCACGAATCGTATGGGCTCGTCCCGACGATGTTTCATTCAAATTTCTGCCCTATCA
ACTTTCGATGGTAGGATAGAGGCCTACCATGGTGGTAACGGGTGACGGAGGATTAGGGTT
CGATTCCGGAGAGGGAGCCTGAGAGATGGCTACCACATCCAAGGAAGGCAGCAGGCGCGC
AAATTACCCAATCCCGACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCGCTTCG
CGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAA
GTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAG
TTAAAAAGCTCGTAGTTGGATTTCGGGTGGGGTGGTGCGGTCCGCCTCTGGTGTGCACTG
CTCTGCTCCACCTTCCTGCCGGGGACGGGCTCCTGGGCTTCACTGTCTGGGACTCGGAGT
CGGCGAGGTTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCCTACGCTCTGAATACATT
AGCATGGAATAACACGATAGGACTCTGGCCTATCTGTTGGTCTGTGGGACCGGAGTAATG
ATTAAGAGGGGTAGTCGGGGGCATCCGTATACCGTTGTCAGAGGTGAAATTCTTGGATTT
ACGGAAGACGAACATCTGCGAAAGCATTTGCCAAGGATACTTTCATTGATCAAGAACGAA
AGTTGGGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001058A_C01_2 KCC001058A_c01_2
         (1028 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|EAA21331.1| hypothetical protein [Plasmodium yoelii yoelii]         56  2e-14
gb|EAA16552.1| hypothetical protein [Plasmodium yoelii yoelii]         53  3e-14
gb|EAA17111.1| hypothetical protein [Plasmodium yoelii yoelii]         48  7e-12
gb|EAA18701.1| hypothetical protein [Plasmodium yoelii yoelii]         48  8e-12
gb|EAA18702.1| hypothetical protein [Plasmodium yoelii yoelii]         58  3e-07

>gb|EAA21331.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 105

 Score = 56.2 bits (134), Expect(2) = 2e-14
 Identities = 35/74 (47%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
 Frame = -3

Query: 570 LDCTHSNYQTRSARY----CYLLSLPPRVGIG*FARLLPSLDVVAISQAPSPESNPNPPS 403
           L+  HSNY+T+   Y    C+ LS                LDVVAISQAPSPESN N P 
Sbjct: 45  LNSHHSNYKTKIWPYIVISCHYLSYL-------------ELDVVAISQAPSPESNSNSPL 91

Query: 402 PVTTMVGLYPTIES 361
           PV  M+G YP I+S
Sbjct: 92  PVKAMLGQYPNIKS 105

 Score = 45.8 bits (107), Expect(2) = 2e-14
 Identities = 25/33 (75%), Positives = 27/33 (81%)
 Frame = -2

Query: 673 TSFLTATT*IYAIGAGITAAAGTRLALQWILVK 575
           ++ LTAT  IYAIGAGITAAAGTRLALQ I  K
Sbjct: 11  SNVLTATILIYAIGAGITAAAGTRLALQLIFGK 43

>gb|EAA16552.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 106

 Score = 53.1 bits (126), Expect(2) = 3e-14
 Identities = 32/45 (71%), Positives = 33/45 (73%)
 Frame = -2

Query: 709 RGGPHHPTRNPTTSFLTATT*IYAIGAGITAAAGTRLALQWILVK 575
           RGG  +   N TTS LTAT  IYAIGAGITAAAGTRLALQ I  K
Sbjct: 4   RGGAKN-LANSTTSVLTATILIYAIGAGITAAAGTRLALQLIFGK 47

 Score = 48.1 bits (113), Expect(2) = 3e-14
 Identities = 31/74 (41%), Positives = 38/74 (50%), Gaps = 4/74 (5%)
 Frame = -3

Query: 570 LDCTHSNYQTRSARY----CYLLSLPPRVGIG*FARLLPSLDVVAISQAPSPESNPNPPS 403
           L+  HSNY+T+   Y    C+ LS                   +AISQAPSPESN N P 
Sbjct: 49  LNSHHSNYKTKIWPYIVISCHYLSYLE----------------LAISQAPSPESNSNSPL 92

Query: 402 PVTTMVGLYPTIES 361
           PV  M+G YP I+S
Sbjct: 93  PVIAMLGQYPNIKS 106

>gb|EAA17111.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 402

 Score = 47.8 bits (112), Expect(2) = 7e-12
 Identities = 31/74 (41%), Positives = 37/74 (49%), Gaps = 4/74 (5%)
 Frame = -3

Query: 570 LDCTHSNYQTRSARY----CYLLSLPPRVGIG*FARLLPSLDVVAISQAPSPESNPNPPS 403
           L   HSNY+T+   Y    C+ LS                   +AISQAPSPESN N P 
Sbjct: 345 LSSHHSNYKTKIWPYIVISCHYLSYLE----------------LAISQAPSPESNSNSPL 388

Query: 402 PVTTMVGLYPTIES 361
           PV  M+G YP I+S
Sbjct: 389 PVKAMLGQYPNIKS 402

 Score = 45.4 bits (106), Expect(2) = 7e-12
 Identities = 25/30 (83%), Positives = 25/30 (83%)
 Frame = -2

Query: 664 LTATT*IYAIGAGITAAAGTRLALQWILVK 575
           LTAT  IYAIGAGITAAAGTRLALQ I  K
Sbjct: 314 LTATILIYAIGAGITAAAGTRLALQLIFGK 343

 Score = 42.7 bits (99), Expect = 0.010
 Identities = 19/28 (67%), Positives = 21/28 (74%)
 Frame = -1

Query: 998 ILGKCFRRCSSSVNPRISPLTTVYGCPR 915
           ILGKCFR C S  N RISPLT+ Y CP+
Sbjct: 257 ILGKCFRSCLSPENLRISPLTSEYKCPQ 284

>gb|EAA18701.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 100

 Score = 47.8 bits (112), Expect(2) = 8e-12
 Identities = 31/74 (41%), Positives = 37/74 (49%), Gaps = 4/74 (5%)
 Frame = -3

Query: 570 LDCTHSNYQTRSARY----CYLLSLPPRVGIG*FARLLPSLDVVAISQAPSPESNPNPPS 403
           L   HSNY+T+   Y    C+ LS                   +AISQAPSPESN N P 
Sbjct: 43  LSSHHSNYKTKIWPYIVISCHYLSYLE----------------LAISQAPSPESNSNSPL 86

Query: 402 PVTTMVGLYPTIES 361
           PV  M+G YP I+S
Sbjct: 87  PVKAMLGQYPNIKS 100

 Score = 45.4 bits (106), Expect(2) = 8e-12
 Identities = 25/30 (83%), Positives = 25/30 (83%)
 Frame = -2

Query: 664 LTATT*IYAIGAGITAAAGTRLALQWILVK 575
           LTAT  IYAIGAGITAAAGTRLALQ I  K
Sbjct: 12  LTATILIYAIGAGITAAAGTRLALQLIFGK 41

>gb|EAA18702.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 58

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 29/37 (78%), Positives = 30/37 (80%)
 Frame = +3

Query: 48  TWLILPVVICLSQRLSHACLSINCLYCETANGSLNQL 158
           TWLILPVVICLSQRLSHA  SI  +  ETANGSL QL
Sbjct: 22  TWLILPVVICLSQRLSHASESIYTIIVETANGSLKQL 58



EST assemble image


clone accession position
1 MX049h01_r BP088033 1 353
2 MX058f06_r BP088361 1 410
3 LC045g05_r AV622144 5 466
4 LC069f12_r AV623864 5 517
5 LC098f08_r AV625840 5 445
6 LCL096h06_r AV631608 35 568
7 HC072c04_r AV637368 66 494
8 HC030e10_r AV634210 70 640
9 LCL096d12_r AV631580 246 566
10 LC059c04_r AV623124 273 798
11 LC030g01_r AV621062 275 802
12 LC020g05_r AV620336 321 833
13 CM062c04_r AV390170 338 935
14 HC021h05_r AV633531 385 866
15 LC013e09_r AV619813 388 888
16 MX038a07_r BP087585 407 781
17 LC080h04_r AV624660 423 931
18 LC081a03_r AV624668 465 900
19 LC054c10_r AV622773 470 1047
20 MX258h05_r BP092770 471 967
21 CM013b11_r AV387072 482 1052




Chlamydomonas reinhardtii
Kazusa DNA Research Institute