KCC001057A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001057A_C01 KCC001057A_c01
GCACGAGATTGCCAACGACGGCACGGTGCACCTGCGGCAGCGCGAGCGCATTTACTTCTC
CTACCTCATCACCCTCAAGCCCACAGCCGGCACTGCCAAACTCAAGGTGCTGCGCGAGGG
CCAGCAGCTGGTGTTTGACATGCCGGTCACGCCCAACGACCTGCTGGTGCCCGTGCACTG
CTACGACCGACTGCCCTCCTAACTTCATAGTAACGCCGGGCCTAGGTGTTCGTGCCGCTG
ACTCAGCCCTACCTGCACGAGTACGGCGAGGACTGGATGAACACGGCGCCGCGGCGGCTG
TACGACAAGGCGATGCACGGCATGATGCAGAAGCCGCGGCAGCAGATCGTCATCCTCAGC
CAGGTCCTGGTGGACGACGTGAACACCGGCTACCAGCAGTTCCAGACGCTGCAGGTCCTG
CGTGTGAACGGCACCGAGGTGCTCCACCTGGCTCACCTCAAGGAGCTGGTGGAGGGCGCG
GCGGACCGCTTCGTGCGCTTCGAGCTGGAGGACGAGCGGGTCATGCTGGTGGAAAGGTCT
C


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001057A_C01 KCC001057A_c01
         (541 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_568543.1| DegP protease [Arabidopsis thaliana] gi|1017821...   118  8e-40
ref|NP_568577.1| DegP protease [Arabidopsis thaliana] gi|1017750...    80  1e-24
ref|NP_564856.1| DegP protease [Arabidopsis thaliana] gi|6686413...    76  2e-23
ref|NP_564857.1| DegP protease [Arabidopsis thaliana] gi|2530562...    67  9e-21
pir||D84921 probable serine proteinase [imported] - Arabidopsis ...    77  3e-19

>ref|NP_568543.1| DegP protease [Arabidopsis thaliana] gi|10178214|dbj|BAB11638.1|
           serine protease-like protein [Arabidopsis thaliana]
           gi|17978951|gb|AAL47441.1| AT5g36950/MLF18_70
           [Arabidopsis thaliana]
          Length = 586

 Score =  118 bits (295), Expect(2) = 8e-40
 Identities = 56/102 (54%), Positives = 76/102 (73%)
 Frame = +1

Query: 226 VFVPLTQPYLHEYGEDWMNTAPRRLYDKAMHGMMQKPRQQIVILSQVLVDDVNTGYQQFQ 405
           VFVPLTQPYLHEYGEDW NT+PR L  +A+  + +K  QQ+VI+SQVL+DD+NTGY++  
Sbjct: 442 VFVPLTQPYLHEYGEDWYNTSPRTLCHRALKDLPKKAGQQLVIVSQVLMDDINTGYERLA 501

Query: 406 TLQVLRVNGTEVLHLAHLKELVEGAADRFVRFELEDERVMLV 531
            LQV +VNG EV +L HL +L+E      +R +L+DE  ++V
Sbjct: 502 ELQVNKVNGVEVNNLRHLCQLIENCNTEKLRIDLDDESRVIV 543

 Score = 67.4 bits (163), Expect(2) = 8e-40
 Identities = 34/64 (53%), Positives = 45/64 (70%)
 Frame = +2

Query: 8   IANDGTVHLRQRERIYFSYLITLKPTAGTAKLKVLREGQQLVFDMPVTPNDLLVPVHCYD 187
           IANDGTV  R RERI F +L+++K    TA +KVLREG++  F + + P   LVPVH +D
Sbjct: 371 IANDGTVPFRNRERITFDHLVSMKKPDETALVKVLREGKEHEFSITLRPLQPLVPVHQFD 430

Query: 188 RLPS 199
           +LPS
Sbjct: 431 QLPS 434

>ref|NP_568577.1| DegP protease [Arabidopsis thaliana] gi|10177507|dbj|BAB10901.1|
           serine protease-like protein [Arabidopsis thaliana]
           gi|15028147|gb|AAK76697.1| putative DegP protease
           [Arabidopsis thaliana] gi|23296815|gb|AAN13177.1|
           putative DegP protease [Arabidopsis thaliana]
          Length = 592

 Score = 80.1 bits (196), Expect(2) = 1e-24
 Identities = 38/104 (36%), Positives = 67/104 (63%), Gaps = 1/104 (0%)
 Frame = +1

Query: 226 VFVPLTQPYLH-EYGEDWMNTAPRRLYDKAMHGMMQKPRQQIVILSQVLVDDVNTGYQQF 402
           VF  ++ PYL  EYG+++   AP +L +K +H M Q   +Q+V++SQVLV D+N GY++ 
Sbjct: 458 VFTTVSVPYLRSEYGKEYEFDAPVKLLEKHLHAMAQSVDEQLVVVSQVLVSDINIGYEEI 517

Query: 403 QTLQVLRVNGTEVLHLAHLKELVEGAADRFVRFELEDERVMLVE 534
              QV+  NG  V +L  L  +VE   D +++F L+ +++++++
Sbjct: 518 VNTQVVAFNGKPVKNLKGLAGMVENCEDEYMKFNLDYDQIVVLD 561

 Score = 54.3 bits (129), Expect(2) = 1e-24
 Identities = 30/64 (46%), Positives = 40/64 (61%)
 Frame = +2

Query: 8   IANDGTVHLRQRERIYFSYLITLKPTAGTAKLKVLREGQQLVFDMPVTPNDLLVPVHCYD 187
           IANDGTV  R  ERI FSYLI+ K T  +A +KVLR  + L F++ +  +  L+P H   
Sbjct: 387 IANDGTVPFRHGERIGFSYLISQKYTGDSALVKVLRNKEILEFNIKLAIHKRLIPAHISG 446

Query: 188 RLPS 199
           + PS
Sbjct: 447 KPPS 450

>ref|NP_564856.1| DegP protease [Arabidopsis thaliana]
           gi|6686413|gb|AAF23847.1|AC007234_19 F1E22.1
           [Arabidopsis thaliana]
          Length = 559

 Score = 75.9 bits (185), Expect(2) = 2e-23
 Identities = 40/103 (38%), Positives = 63/103 (60%)
 Frame = +1

Query: 226 VFVPLTQPYLHEYGEDWMNTAPRRLYDKAMHGMMQKPRQQIVILSQVLVDDVNTGYQQFQ 405
           VF+PLT+PY+              + + A+  M +K  +Q+VI+SQ+L DD+NTGY  F+
Sbjct: 424 VFLPLTKPYIDS----------SCVSESALGKMPKKAGEQVVIISQILEDDINTGYSIFE 473

Query: 406 TLQVLRVNGTEVLHLAHLKELVEGAADRFVRFELEDERVMLVE 534
             QV +VNG +V +L HL +LVE      VR +LE ++V+ ++
Sbjct: 474 DFQVKKVNGVQVHNLKHLYKLVEECCTETVRMDLEKDKVITLD 516

 Score = 55.1 bits (131), Expect(2) = 2e-23
 Identities = 28/64 (43%), Positives = 40/64 (61%)
 Frame = +2

Query: 8   IANDGTVHLRQRERIYFSYLITLKPTAGTAKLKVLREGQQLVFDMPVTPNDLLVPVHCYD 187
           I ND +VH R++ERI F +L+++K    TA LKVLREG++  F+  +     LVP   YD
Sbjct: 353 IGNDSSVHFRKKERITFKHLVSMKKPCETALLKVLREGKEYEFNSSLKSVPPLVPKRQYD 412

Query: 188 RLPS 199
           +  S
Sbjct: 413 KSAS 416

>ref|NP_564857.1| DegP protease [Arabidopsis thaliana] gi|25305620|pir||D96681
           protein F1E22.2 [imported] - Arabidopsis thaliana
           gi|6686412|gb|AAF23846.1|AC007234_18 F1E22.2
           [Arabidopsis thaliana]
          Length = 518

 Score = 66.6 bits (161), Expect(2) = 9e-21
 Identities = 39/102 (38%), Positives = 60/102 (58%)
 Frame = +1

Query: 226 VFVPLTQPYLHEYGEDWMNTAPRRLYDKAMHGMMQKPRQQIVILSQVLVDDVNTGYQQFQ 405
           VFVPLTQPY+              + + A+  M +K  +Q+V     L DD+N GY  F+
Sbjct: 402 VFVPLTQPYIDS----------TLICNCAIKYMPEKAGEQLV-----LADDINAGYTDFK 446

Query: 406 TLQVLRVNGTEVLHLAHLKELVEGAADRFVRFELEDERVMLV 531
            L+V++VNG +V +L HL ELVE      +R +LE+E+V+++
Sbjct: 447 NLKVIKVNGVQVENLKHLTELVETCWTEDLRLDLENEKVVVL 488

 Score = 55.1 bits (131), Expect(2) = 9e-21
 Identities = 28/64 (43%), Positives = 40/64 (61%)
 Frame = +2

Query: 8   IANDGTVHLRQRERIYFSYLITLKPTAGTAKLKVLREGQQLVFDMPVTPNDLLVPVHCYD 187
           I ND  V  R +ERI F++ +++K    T  L+VLR+G++  F + V P   LVP H YD
Sbjct: 331 IGNDAKVTFRNKERINFNHFVSMKKLDETVLLQVLRDGKEHEFHIMVKPVPPLVPGHQYD 390

Query: 188 RLPS 199
           +LPS
Sbjct: 391 KLPS 394

>pir||D84921 probable serine proteinase [imported] - Arabidopsis thaliana
          Length = 632

 Score = 77.0 bits (188), Expect(2) = 3e-19
 Identities = 41/104 (39%), Positives = 63/104 (60%)
 Frame = +1

Query: 226 VFVPLTQPYLHEYGEDWMNTAPRRLYDKAMHGMMQKPRQQIVILSQVLVDDVNTGYQQFQ 405
           VF PL++P + E  ED   T   +L  KA + + +   +QIVILSQVL ++VN GY+   
Sbjct: 472 VFTPLSEPLIEEECED---TIGLKLLTKARYSVARFRGEQIVILSQVLANEVNIGYEDMN 528

Query: 406 TLQVLRVNGTEVLHLAHLKELVEGAADRFVRFELEDERVMLVER 537
             QVL+ NG  + ++ HL  L++   D+++ FE ED  V ++ER
Sbjct: 529 NQQVLKFNGIPIRNIHHLAHLIDMCKDKYLVFEFEDNYVAVLER 572

 Score = 39.3 bits (90), Expect(2) = 3e-19
 Identities = 22/61 (36%), Positives = 31/61 (50%)
 Frame = +2

Query: 17  DGTVHLRQRERIYFSYLITLKPTAGTAKLKVLREGQQLVFDMPVTPNDLLVPVHCYDRLP 196
           +GTV  R  ERI F YLI+ K     A++ ++R G+     + + P   LVP H     P
Sbjct: 404 EGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHKKVQVVLRPRVHLVPYHIDGGQP 463

Query: 197 S 199
           S
Sbjct: 464 S 464



EST assemble image


clone accession position
1 CM013b08_r AV387082 1 588
2 CM067g06_r AV390937 1 585




Chlamydomonas reinhardtii
Kazusa DNA Research Institute