KCC001056A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001056A_C01 KCC001056A_c01
gcaatactaaTACTGTCTTTATCTCGGAATTCTTATTGCTCAACACTTCAGTCTCAGGAG
GCAACAGCTTCGAGCCCCTGTTTTTCGGCCTTTGCCTAGTGCTTTACATCAATCACTAGT
AAAAAATGTCGATGGTAGCTGGAAAGATGGATGCAGTGTCTGTAAACAGGGTCTGGGAGG
AGCACGTCAAAAAGGAGGCAAAGACACTGAAGCTAAACGACCAATTCTGCATCACAGACC
CCCGTAAAATGGACGTTCTACCGGAGAAGCCCAACCGGACCGTGCCCACGCAAAACCCGG
ACGCGTCCACCATCGCTGCTGCCACGCAAACGCTACATAACCTCGCTGCGGCTAAGGACG
TGGACAAGCTGCCTGTGGACCGCTACGCGCTGCCGGTGACCGGCAACATGGAGTACGGCT
TCTTCCATCGCGTGCAGAACCAAAACACCAACCCCATGTTTGACCACAAGCACAATGTGT
GCGACGTCACGGAGTACGCACAGGAATATGTCAAGAGCAACGGAGGCGTGGGGCCTTACA
CGACAAAGCTGAAACAATGAAGCCAGCGCCAGCGCTGGTGGGGCCCGGTTTGGGTCCATT
GGTTCCGGACTGGATGGGCGCCCGCACTCGATGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001056A_C01 KCC001056A_c01
         (634 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophil...    42  0.006
ref|XP_238447.2| similar to elastin microfibril interface locate...    37  0.18
ref|NP_598679.1| elastin microfibril interface located protein 1...    37  0.31
gb|AAC44888.1| unknown [Nannocystis exedens]                           36  0.41
ref|XP_311331.1| ENSANGP00000001657 [Anopheles gambiae] gi|30177...    36  0.41

>ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophila melanogaster]
           gi|28380257|gb|AAF50957.3| CG3047-PA [Drosophila
           melanogaster]
          Length = 1225

 Score = 42.4 bits (98), Expect = 0.006
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
 Frame = +1

Query: 271 PTGPCPRKTRT----RPPSLLPRKRYITSLRLRTWTS--CLWTATRCR*PATW--STASS 426
           PT   PR T T    RP +  PR    T+ R  T T+  C  T + C    T   ST ++
Sbjct: 235 PTTTTPRSTTTTTTSRPTTTTPRSTTTTTTRRPTTTTPRCTTTTSTCAPTTTTPRSTTTT 294

Query: 427 IACRTKTPTP-CLTTSTMCATSRSTHRN 507
              R  T TP C TT++ C+ +R+T R+
Sbjct: 295 TTSRPTTTTPRCTTTTSTCSPTRTTPRS 322

 Score = 35.8 bits (81), Expect = 0.53
 Identities = 35/122 (28%), Positives = 48/122 (38%), Gaps = 5/122 (4%)
 Frame = +1

Query: 172  SGRSTSKRRQRH*S*TTNSASQTPVKWTFYRRS-PTGPCPRKTRTR----PPSLLPRKRY 336
            SG +T+  R    + T+   + TP   T    S PT   PR T T     P +  PR   
Sbjct: 764  SGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTT 823

Query: 337  ITSLRLRTWTSCLWTATRCR*PATWSTASSIACRTKTPTPCLTTSTMCATSRSTHRNMSR 516
             TS    T T+          P + +T S+    T TP    TTST C T+ +     + 
Sbjct: 824  TTSTSGPTTTT----------PRSTTTTSTSGPTTTTPRSTTTTSTSCPTTTTPRSTTTT 873

Query: 517  AT 522
             T
Sbjct: 874  CT 875

 Score = 35.0 bits (79), Expect = 0.90
 Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 22/106 (20%)
 Frame = +1

Query: 271 PTGPCPRKTRTRPPSL-----------------LPRKRYITSL-RLRTWTSCLWTATRCR 396
           PT PC ++T T  P+                   PR    TS  R  T T    T T   
Sbjct: 190 PTSPCTQETTTPTPTCSTQGTQTTPCTCAQTTTTPRSTTTTSTSRPTTTTPRSTTTTTTS 249

Query: 397 *PATWSTASSIACRTKTPTP----CLTTSTMCATSRSTHRNMSRAT 522
            P T +  S+    T+ PT     C TT++ CA + +T R+ +  T
Sbjct: 250 RPTTTTPRSTTTTTTRRPTTTTPRCTTTTSTCAPTTTTPRSTTTTT 295

 Score = 34.7 bits (78), Expect = 1.2
 Identities = 28/91 (30%), Positives = 37/91 (39%), Gaps = 14/91 (15%)
 Frame = +1

Query: 268  SPTGPCPRKTRT----RPPSLLPRKRYITSLRLRTWTSCLWTATRCR*PATWSTASSIAC 435
            +PT   PR T T    RP +  PR    T+    T T+   T T C    T +T  S   
Sbjct: 1021 APTTTTPRSTTTTTTSRPTTTTPRSTTTTTTSRPTTTTPRSTTTPCTSRPTTTTPRSTTT 1080

Query: 436  RT----------KTPTPCLTTSTMCATSRST 498
             T           T TPC TT+   + +R+T
Sbjct: 1081 TTTSRPTTTTPRSTTTPCPTTTPSASPTRTT 1111

 Score = 32.7 bits (73), Expect = 4.5
 Identities = 35/128 (27%), Positives = 49/128 (37%), Gaps = 16/128 (12%)
 Frame = +1

Query: 238 TPVKWTFYRRSPTGPC--------PRKTRT----RPPSLLPRKRYITSL-RLRTWTSCLW 378
           TP      + + T PC        PR T T    RP +  PR    T+  R  T T    
Sbjct: 200 TPTPTCSTQGTQTTPCTCAQTTTTPRSTTTTSTSRPTTTTPRSTTTTTTSRPTTTTPRST 259

Query: 379 TATRCR*PATWS---TASSIACRTKTPTPCLTTSTMCATSRSTHRNMSRATEAWGLTRQS 549
           T T  R P T +   T ++  C   T TP  TT+T  +   +T    +  T     TR +
Sbjct: 260 TTTTTRRPTTTTPRCTTTTSTCAPTTTTPRSTTTTTTSRPTTTTPRCTTTTSTCSPTRTT 319

Query: 550 *NNEASAS 573
             +  + S
Sbjct: 320 PRSTTTTS 327

 Score = 31.6 bits (70), Expect = 10.0
 Identities = 39/147 (26%), Positives = 56/147 (37%), Gaps = 4/147 (2%)
 Frame = +1

Query: 154 QCL*TGSGRSTSKRRQRH*S*TTNSASQTPVKWTFYRRSPTGPCPRKTRTRPPSLLPRKR 333
           +C  T S  S ++   R  S TT S S+          +P+  C R    RP +  PR  
Sbjct: 305 RCTTTTSTCSPTRTTPR--STTTTSTSRPTTTTPRCTTTPSTTCTR----RPTTTTPRST 358

Query: 334 YITSLRLRTWTSCLWTATRC-R*PATWSTASSIACRTKTP---TPCLTTSTMCATSRSTH 501
             T     T T+   T T C   P T +  S+    T  P   TP  TT+T  +   +T 
Sbjct: 359 TTTCTSGPTTTTPRSTTTTCTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTT 418

Query: 502 RNMSRATEAWGLTRQS*NNEASASAGG 582
              +  T   G T  +  +  + S  G
Sbjct: 419 PRSTTTTSTSGPTTTTPRSTTTTSTSG 445

>ref|XP_238447.2| similar to elastin microfibril interface located protein 1 [Rattus
           norvegicus]
          Length = 1017

 Score = 37.4 bits (85), Expect = 0.18
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = +2

Query: 74  APVFRPLPSALHQSLVKNVDGSWKDGCSVCKQGLGGARQKGGKDTEAKRPI 226
           APV  P+PS   + L++ ++   ++ CSVC  GL G RQ+  +D E  R +
Sbjct: 279 APV--PVPSGPSEELLRQLERQLQESCSVCLAGLDGFRQQQQEDRERLRTL 327

>ref|NP_598679.1| elastin microfibril interface located protein 1 [Mus musculus]
           gi|37537835|sp|Q99K41|EMI1_MOUSE EMILIN 1 precursor
           (Elastin microfibril interface-located protein 1)
           (Elastin microfibril interfacer 1)
           gi|13529521|gb|AAH05481.1| Elastin microfibril interface
           located protein 1 [Mus musculus]
           gi|26325298|dbj|BAC26403.1| unnamed protein product [Mus
           musculus]
          Length = 1017

 Score = 36.6 bits (83), Expect = 0.31
 Identities = 16/46 (34%), Positives = 27/46 (57%)
 Frame = +2

Query: 89  PLPSALHQSLVKNVDGSWKDGCSVCKQGLGGARQKGGKDTEAKRPI 226
           P+PS   + L++ ++   ++ CSVC  GL G RQ+  +D E  R +
Sbjct: 282 PVPSGPSEELLRQLERQLQESCSVCLTGLDGFRQQQQEDRERLRTL 327

>gb|AAC44888.1| unknown [Nannocystis exedens]
          Length = 290

 Score = 36.2 bits (82), Expect = 0.41
 Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 5/121 (4%)
 Frame = +1

Query: 181 STSKRRQRH*S*TTNSASQTPVKWTFYRRSPTGPC--PRKTRTRPPSLLPRKRYITSLRL 354
           S++ RR    S      S+TP  W+        PC  P     RP  + P          
Sbjct: 32  SSASRRSSPSSAVRWPCSRTPPTWSATSPPSRSPCSPPSSRCVRPCRVAPTGSPAPRPSA 91

Query: 355 RTWTSCLWTATRCR*PATW---STASSIACRTKTPTPCLTTSTMCATSRSTHRNMSRATE 525
           R+ T C   ++R R P++    S AS+ A  T  P PC +++   ++S S     SRA  
Sbjct: 92  RSPTPC---SSRSRAPSSSTARSPASAAATPTSNPNPCWSSAPPASSSTSPRPGTSRAPA 148

Query: 526 A 528
           A
Sbjct: 149 A 149

>ref|XP_311331.1| ENSANGP00000001657 [Anopheles gambiae] gi|30177813|gb|EAA06779.2|
           ENSANGP00000001657 [Anopheles gambiae str. PEST]
          Length = 283

 Score = 36.2 bits (82), Expect = 0.41
 Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 1/196 (0%)
 Frame = +1

Query: 22  SRNSYCSTLQSQEATASSPCFSAFA*CFTSITSKKCRW*LERWMQCL*TGSGRSTSKRRQ 201
           S  S CS+  S  ++A+S C S    C +S +S            C    S RS+S    
Sbjct: 43  SCTSSCSSGTSSCSSATSSCSSGTTSCTSSTSSSN-----SCTSSCSSGTSSRSSSTTSS 97

Query: 202 RH*S*TTNSASQTPVKWTFYRRSPTGPCPRKTRTRPPSLLPRKRYITSLRLRTWTSCLWT 381
              + + +S + +         S T  C   T +            TS    T +SC   
Sbjct: 98  SSGTSSCSSGTTSSSSCASSCSSSTSSCSSGTSSCRSGTSSCSSCTTSCSCCT-SSCSSC 156

Query: 382 ATRCR*PATWSTASSIACRTKTPTPCLTTSTMCATS-RSTHRNMSRATEAWGLTRQS*NN 558
           A+ C   A+ S+ +S +C   + + C ++ + CA+S  S   + S  T +      S ++
Sbjct: 157 ASSCSSCASSSSTTSCSCCASSSSSCASSCSSCASSCSSCASSCSSGTTSSSSCASSCSS 216

Query: 559 EASASAGGARFGSIGS 606
             S+S+ G    S G+
Sbjct: 217 STSSSSSGTTSCSSGT 232



EST assemble image


clone accession position
1 LC055d11_r AV622844 1 518
2 LC039c07_r AV621663 11 475
3 CM013b07_r AV387103 18 605
4 CM058h08_r AV390355 19 635
5 LC096c10_r AV625675 21 495
6 LCL097b07_r AV631624 21 342
7 LC044a01_r AV622120 21 534
8 CM020g12_r AV397466 25 635
9 MX219d07_r BP090137 26 335




Chlamydomonas reinhardtii
Kazusa DNA Research Institute