KCC001055A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001055A_C01 KCC001055A_c01
gcacgaggccagaaccaggacctgtttgccatcggcttcctcatcgcgctgttgtacctg
gccttcaagctgtttggagcGCTGGAGACACTGGGCTAAGGGCCTGACATGGGCTGAGGG
GCTGAAGGGCTTGGGGGTTTGATGGGCTGAGGGGCTGAGGCAAGCAGCCCAGGCGGCTTC
TGTGTCTCAGGCTGGCGGGACAAAGCGGGGGCTGCAGCAGCGCAGCCGGCGCAAGCGGCA
GAAGAGCTGCAGTGGGGGCACAGTATTGGAAGAAGCGACGACGGCAGACGCAGAGGGGAG
GCGGGGGCGGGCACTGTGGGGGCAAGACTAGGGAGAGTCACTTATTGCTGAGTGGTATGA
GACCTGCACCGGTTTTGCTGTGGTGCTGCGACAGCGTGTGACTTGTGAACGACAATTGCC
AGCTTGTGCGTGTCCTGTGCGCGCTTGCCCAAGCTTTGGGCTGGATGGAACCGAAACAGA
TATAAATACAGTGGGTTAAGCACAACCGGTGTCCTCACTGTCCGTGAGTTTTTTTTGGTG
TGTGCCGTGTCTTATTTGTATGTGCGCTTGCATGAATTGTGTGCCCAAGTGCCTCTCGTC
ATGCAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001055A_C01 KCC001055A_c01
         (606 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_039850.1| Tegument protein [Human herpesvirus 4] gi|13557...    48  9e-05
gb|AAL40834.1|AF448220_1 BPLF1 [Human herpesvirus 4]                   48  9e-05
gb|AAD55980.2|AF159297_1 extensin-like protein [Zea mays]              48  9e-05
emb|CAE03119.1| OSJNBa0067K08.27 [Oryza sativa (japonica cultiva...    48  9e-05
emb|CAD89603.1| putative arabinagalactan protein [Lotus cornicul...    47  2e-04

>ref|NP_039850.1| Tegument protein [Human herpesvirus 4] gi|135574|sp|P03186|TEGU_EBV
           LARGE TEGUMENT PROTEIN gi|73929|pir||QQBE8 BPLF1 protein
           - human herpesvirus 4 (strain B95-8)
           gi|1334853|emb|CAA24839.1| BPLF1 reading frame, 1 NXT/S,
           analogous to VZV RF22 [Human herpesvirus 4]
           gi|23893598|emb|CAD53402.1| large tegument protein
           [Human herpesvirus 4] gi|225109|prf||1208408E gene BPLF1
          Length = 3149

 Score = 48.1 bits (113), Expect = 9e-05
 Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
 Frame = -2

Query: 329 SLAPTV-PAPASPLRLPSSL---------LPILCPHCSSSAACAGCAAAAPALSRQPETQ 180
           ++AP+V P+P  PL++P  L         +P+  P  S +AA A        LS  P  Q
Sbjct: 487 TIAPSVTPSPRLPLQIPIPLPQAAPSNPKIPLTTPSPSPTAAAA---PTTTTLSPPPTQQ 543

Query: 179 KPPGLLASAPQPIKP---------PSPSAPQPMSGP*PSVSSAPNSL 66
           +PP   A AP P+ P         P+PS   P   P PS + AP+ L
Sbjct: 544 QPPQSAAPAPSPLLPQQQPTPSAAPAPSPLLPQQQPPPSAARAPSPL 590

 Score = 36.6 bits (83), Expect = 0.28
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
 Frame = -2

Query: 299 SPLRLPSSLLPILCPHCSSSAACAGCAAAAPALSRQPETQKPPGLLASAPQPIKPP---- 132
           SP   P+S  P      S++ A A  A+AAPA S  P +  P     ++  P+  P    
Sbjct: 330 SPPSSPASAAPASAAPASAAPASAAPASAAPA-SAAPASAAPASAAPASSPPLFIPIPGL 388

Query: 131 --SPSAPQPMSGP*PSVSSAPNSLKAR----YNSAMRKPMANR 21
             +P  P P + P  S  +AP + K +     +S  +KP + R
Sbjct: 389 GHTPGVPAPSTPPRASSGAAPQTPKRKKGLGKDSPHKKPTSGR 431

 Score = 35.0 bits (79), Expect = 0.83
 Identities = 32/107 (29%), Positives = 39/107 (35%), Gaps = 16/107 (14%)
 Frame = -2

Query: 341 VTLPSLAPTVPA----------------PASPLRLPSSLLPILCPHCSSSAACAGCAAAA 210
           +T PS +PT  A                P S    PS LLP   P  S          AA
Sbjct: 518 LTTPSPSPTAAAAPTTTTLSPPPTQQQPPQSAAPAPSPLLPQQQPTPS----------AA 567

Query: 209 PALSRQPETQKPPGLLASAPQPIKPPSPSAPQPMSGP*PSVSSAPNS 69
           PA S     Q+PP   A AP P+ P     P     P P+    P++
Sbjct: 568 PAPSPLLPQQQPPPSAARAPSPLPPQQQPLPSATPAPPPAQQLPPSA 614

>gb|AAL40834.1|AF448220_1 BPLF1 [Human herpesvirus 4]
          Length = 3179

 Score = 48.1 bits (113), Expect = 9e-05
 Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
 Frame = -2

Query: 329 SLAPTV-PAPASPLRLPSSL---------LPILCPHCSSSAACAGCAAAAPALSRQPETQ 180
           ++AP+V P+P  PL++P  L         +P+  P  S +AA A        LS  P  Q
Sbjct: 517 TIAPSVTPSPRLPLQIPIPLPQAAPSNPEIPLTTPSPSPTAAAA---PTTTTLSPPPTQQ 573

Query: 179 KPPGLLASAPQPIKP---------PSPSAPQPMSGP*PSVSSAPNSL 66
           +PP   A AP P+ P         P+PS   P   P PS + AP+ L
Sbjct: 574 QPPQSAAPAPSPLLPQQQPTPSAAPAPSPLLPQQQPPPSAARAPSPL 620

 Score = 39.3 bits (90), Expect = 0.044
 Identities = 35/117 (29%), Positives = 48/117 (40%), Gaps = 14/117 (11%)
 Frame = -2

Query: 329 SLAPTVPAPASPLRLPSSLLPILCPHCSSSAACAGCAAAAPALSRQPETQKPPGLLASAP 150
           S AP   APAS    P+S  P      S++ A A  A+AAPA +            ASA 
Sbjct: 347 SAAPASAAPASAA--PASAAPASAAPASAAPASAAPASAAPAXAAPASAAPASAAPASAA 404

Query: 149 QPIKPP----------SPSAPQPMSGP*PSVSSAPNSLKAR----YNSAMRKPMANR 21
               PP          +P  P P + P  S  +AP + K +     +S  +KP + R
Sbjct: 405 PASSPPLFIPIPGLGHTPGVPAPSTPPRASGGAAPQTPKRKKGLGKDSPHKKPTSGR 461

 Score = 35.0 bits (79), Expect = 0.83
 Identities = 32/107 (29%), Positives = 39/107 (35%), Gaps = 16/107 (14%)
 Frame = -2

Query: 341 VTLPSLAPTVPA----------------PASPLRLPSSLLPILCPHCSSSAACAGCAAAA 210
           +T PS +PT  A                P S    PS LLP   P  S          AA
Sbjct: 548 LTTPSPSPTAAAAPTTTTLSPPPTQQQPPQSAAPAPSPLLPQQQPTPS----------AA 597

Query: 209 PALSRQPETQKPPGLLASAPQPIKPPSPSAPQPMSGP*PSVSSAPNS 69
           PA S     Q+PP   A AP P+ P     P     P P+    P++
Sbjct: 598 PAPSPLLPQQQPPPSAARAPSPLPPQQQPLPSATPAPPPAQQLPPSA 644

>gb|AAD55980.2|AF159297_1 extensin-like protein [Zea mays]
          Length = 1016

 Score = 48.1 bits (113), Expect = 9e-05
 Identities = 32/87 (36%), Positives = 43/87 (48%), Gaps = 1/87 (1%)
 Frame = -2

Query: 332  PSLAPTVPAPASPLRLPSSLLPILCPHCSSSAACAGCAAAAPALSRQPETQKPPGLLASA 153
            P  +P  PA + P   P S LP   P   S    A  ++  P +   P    PP  ++S 
Sbjct: 893  PISSPPPPAKSPPPPAPMSSLP---PPVKSPPPPAPVSSPPPPMKSPP----PPAPISSP 945

Query: 152  PQ-PIKPPSPSAPQPMSGP*PSVSSAP 75
            P  P+KPPS   P P+S P P+V+SAP
Sbjct: 946  PPAPVKPPSLPPPAPVSSPPPAVTSAP 972

 Score = 41.6 bits (96), Expect = 0.009
 Identities = 32/92 (34%), Positives = 40/92 (42%), Gaps = 4/92 (4%)
 Frame = -2

Query: 338  TLPSLAPTVPAPASPLRLPS----SLLPILCPHCSSSAACAGCAAAAPALSRQPETQKPP 171
            T P  AP    P +P  LP     SL P   P   SS   A  ++  P     P    PP
Sbjct: 855  TSPPPAPVSSPPPTPKPLPPPAPVSLPP---PEVKSSPPPAPISSPPPPAKSPP----PP 907

Query: 170  GLLASAPQPIKPPSPSAPQPMSGP*PSVSSAP 75
              ++S P P+K P P  P P+S P P + S P
Sbjct: 908  APMSSLPPPVKSPPP--PAPVSSPPPPMKSPP 937

 Score = 39.3 bits (90), Expect = 0.044
 Identities = 31/109 (28%), Positives = 45/109 (40%), Gaps = 6/109 (5%)
 Frame = -2

Query: 395 AVAAPQQNRCRSHTTQQ*VTLPSLAPTVPAPASPLRLPSSLLPILCPHCSSSAACAGCAA 216
           A ++P     +S      V LP  A T P+P +P+  P    P+  P     +       
Sbjct: 509 AASSPPATPVKSSPPPAAVVLPPPAKT-PSPPAPVASPPPEAPVSSPQPQVKSPPPPAPV 567

Query: 215 AAPALSRQPETQKPPGLLASAPQPI----KPPSP--SAPQPMSGP*PSV 87
           A+P     P    PP    ++P P+     PP+P  S PQP+  P P V
Sbjct: 568 ASPP---PPMKSPPPPARVASPPPLMKSPPPPAPVASPPQPLKSPPPPV 613

 Score = 38.9 bits (89), Expect = 0.057
 Identities = 36/108 (33%), Positives = 47/108 (43%), Gaps = 17/108 (15%)
 Frame = -2

Query: 332 PSLAPTVPAPASPLRLPSSLLP-----ILCPHCSSSAACAGCAAA---APALSRQPETQK 177
           P L    PA +SP   P    P     +L P   + +  A  A+    AP  S QP+ + 
Sbjct: 501 PPLQAQPPAASSPPATPVKSSPPPAAVVLPPPAKTPSPPAPVASPPPEAPVSSPQPQVKS 560

Query: 176 --PPGLLASAPQPIKPPSP-----SAPQPMSGP*P--SVSSAPNSLKA 60
             PP  +AS P P+K P P     S P  M  P P   V+S P  LK+
Sbjct: 561 PPPPAPVASPPPPMKSPPPPARVASPPPLMKSPPPPAPVASPPQPLKS 608

 Score = 36.6 bits (83), Expect = 0.28
 Identities = 30/104 (28%), Positives = 38/104 (35%), Gaps = 18/104 (17%)
 Frame = -2

Query: 332  PSLAPTVPAPASPLRL---PSSLLPILCPHCSSSAACAGCAAAAPALSRQPETQKPPGLL 162
            P   P+ P P SP+     PS   P   P  S   A    +  AP  S  P    PP + 
Sbjct: 706  PPSTPSKPPPPSPVETLPPPSKSSPPEEPVSSPPQAPKSSSPPAPVSSPPPLKSSPPPVP 765

Query: 161  ASAPQPIKPPSP---------------SAPQPMSGP*PSVSSAP 75
             S+P P    SP                 P P+S P P+  S+P
Sbjct: 766  ESSPPPTPKSSPPLAPVSSPPQVEKTSPPPAPVSSPPPTPKSSP 809

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
 Frame = -2

Query: 332 PSLAPTVPAPASPLRLPSSLLPILCPHCSSSAACAGCAAAAPALSRQPETQK--PPGLLA 159
           P LAP V +P+ P++LP    P+  P  S+             +   P  +K  PP  L 
Sbjct: 641 PPLAP-VSSPSPPVKLP----PLPAPGKSTPPPEEEKPTPPTPVKSSPPPEKSLPPPTLT 695

Query: 158 SAP----QPIKPPSPSAPQPMSG----P*PSVSSAP 75
           ++P    +P  P +PS P P S     P PS SS P
Sbjct: 696 TSPPPQEKPTPPSTPSKPPPPSPVETLPPPSKSSPP 731

 Score = 33.5 bits (75), Expect = 2.4
 Identities = 28/91 (30%), Positives = 38/91 (40%), Gaps = 5/91 (5%)
 Frame = -2

Query: 332 PSLAPTVPAPASPLRL--PSSLLPILCPHCSSSAACAGCAAAAPALSRQPET---QKPPG 168
           P  +P     A PL+   P++  P   P   SS   A      PA +  P       PP 
Sbjct: 490 PGTSPPASRGAPPLQAQPPAASSPPATP-VKSSPPPAAVVLPPPAKTPSPPAPVASPPPE 548

Query: 167 LLASAPQPIKPPSPSAPQPMSGP*PSVSSAP 75
              S+PQP +  SP  P P++ P P + S P
Sbjct: 549 APVSSPQP-QVKSPPPPAPVASPPPPMKSPP 578

 Score = 33.5 bits (75), Expect = 2.4
 Identities = 34/113 (30%), Positives = 46/113 (40%), Gaps = 22/113 (19%)
 Frame = -2

Query: 332 PSLAPTVPAPASPLRLPSSLLPILCPHCSSSAACAGCA---AAAPALSRQPET---QKPP 171
           P   PT+ +P +   +P+  +P   P  +S  A  G     A  PA S  P T     PP
Sbjct: 464 PMRMPTLRSPPADEYIPTPPVPAKSPPGTSPPASRGAPPLQAQPPAASSPPATPVKSSPP 523

Query: 170 GLLASAPQPIKPPS-------------PSAPQPM--SGP*PS-VSSAPNSLKA 60
                 P P K PS              S+PQP   S P P+ V+S P  +K+
Sbjct: 524 PAAVVLPPPAKTPSPPAPVASPPPEAPVSSPQPQVKSPPPPAPVASPPPPMKS 576

 Score = 33.1 bits (74), Expect = 3.1
 Identities = 29/88 (32%), Positives = 37/88 (41%), Gaps = 1/88 (1%)
 Frame = -2

Query: 335  LPSLAPTVPAPASPLRLPSSLLPILCPHCSSSAACAGCAAAAPALSRQPETQKPPGLL-A 159
            L S  P VP  + P    SS  P L P  S           AP  S  P  +  P L   
Sbjct: 757  LKSSPPPVPESSPPPTPKSS--PPLAPVSSPPQVEKTSPPPAPVSSPPPTPKSSPPLAPV 814

Query: 158  SAPQPIKPPSPSAPQPMSGP*PSVSSAP 75
            S+P  ++  SP  P P+S P P+  S+P
Sbjct: 815  SSPPQVEKTSPP-PAPVSSPPPTPKSSP 841

 Score = 31.6 bits (70), Expect = 9.2
 Identities = 26/87 (29%), Positives = 35/87 (39%)
 Frame = -2

Query: 335 LPSLAPTVPAPASPLRLPSSLLPILCPHCSSSAACAGCAAAAPALSRQPETQKPPGLLAS 156
           + S  P  P  + P  L S   P+L               + P++   P    PP  +AS
Sbjct: 590 MKSPPPPAPVASPPQPLKSPPPPVLW-------------LSTPSVKSPP----PPVPVAS 632

Query: 155 APQPIKPPSPSAPQPMSGP*PSVSSAP 75
            P P+K P P A  P+S P P V   P
Sbjct: 633 PPPPVKSPPPLA--PVSSPSPPVKLPP 657

>emb|CAE03119.1| OSJNBa0067K08.27 [Oryza sativa (japonica cultivar-group)]
          Length = 508

 Score = 48.1 bits (113), Expect = 9e-05
 Identities = 35/83 (42%), Positives = 45/83 (54%)
 Frame = -2

Query: 317 TVPAPASPLRLPSSLLPILCPHCSSSAACAGCAAAAPALSRQPETQKPPGLLASAPQPIK 138
           T P PA+P +  S       P  +SS++    AA AP   R P  Q PP   A++P P K
Sbjct: 62  TPPTPATPAKAASP------PATNSSSSPRTPAAPAP---RPP--QPPP---ATSPAPTK 107

Query: 137 PPSPSAPQPMSGP*PSVSSAPNS 69
           P SP AP+P S P PS S+ P+S
Sbjct: 108 PSSPPAPKPPSPPAPSPSTTPSS 130

 Score = 38.9 bits (89), Expect = 0.057
 Identities = 32/98 (32%), Positives = 38/98 (38%)
 Frame = -2

Query: 338 TLPSLAPTVPAPASPLRLPSSLLPILCPHCSSSAACAGCAAAAPALSRQPETQKPPGLLA 159
           T PS +P  P P SP     S  P   P    S+      AA P     P    PP    
Sbjct: 106 TKPS-SPPAPKPPSPPAPSPSTTPSSPPAPKPSSPPP---AATPTTKPSPPPSSPPAPRP 161

Query: 158 SAPQPIKPPSPSAPQPMSGP*PSVSSAPNSLKARYNSA 45
           S P P + P P  P P + P PS S  P    +  NS+
Sbjct: 162 SPPLPPRTPPP--PPPAAAPKPSPSPPPAPTNSTTNSS 197

 Score = 32.3 bits (72), Expect = 5.4
 Identities = 24/93 (25%), Positives = 36/93 (37%)
 Frame = -2

Query: 332 PSLAPTVPAPASPLRLPSSLLPILCPHCSSSAACAGCAAAAPALSRQPETQKPPGLLASA 153
           P+ +P+    + P   PSS  P   P    S   +   A  P+    P T  PP   A+A
Sbjct: 120 PAPSPSTTPSSPPAPKPSSPPPAATPTTKPSPPPSSPPAPRPSPPLPPRTPPPPPP-AAA 178

Query: 152 PQPIKPPSPSAPQPMSGP*PSVSSAPNSLKARY 54
           P+P   P P+     +      +S P  L   +
Sbjct: 179 PKPSPSPPPAPTNSTTNSSSPSTSTPVQLSPNF 211

>emb|CAD89603.1| putative arabinagalactan protein [Lotus corniculatus var.
           japonicus]
          Length = 149

 Score = 47.0 bits (110), Expect = 2e-04
 Identities = 31/90 (34%), Positives = 37/90 (40%), Gaps = 2/90 (2%)
 Frame = -2

Query: 332 PSLAPTVPAPASPLRLPSSLLPILCPHCSSSAACAGCAAAAPALSRQPETQKPPGLLASA 153
           P+ APT   P  P   P+   P   P  ++ A      AA PA S  P    P      A
Sbjct: 28  PTQAPTTTPPPPPAAAPAPP-PATPPPAATPAPTTTPPAATPAPSASPPAPTPTASPTGA 86

Query: 152 PQPI--KPPSPSAPQPMSGP*PSVSSAPNS 69
           P P    PP+P    P SGP P+    PNS
Sbjct: 87  PTPSASSPPAPIPSGPASGPGPAAGPGPNS 116

 Score = 35.0 bits (79), Expect = 0.83
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -2

Query: 242 SAACAGCAAAAPALSRQPETQKPPGLLASAPQPIKPPSPSAPQPMSGP*PSVSSAPNS 69
           + +C   A  A        T  PP   A AP P  PP  + P P + P P+ + AP++
Sbjct: 16  ATSCVAQAPGAAPTQAPTTTPPPPPAAAPAPPPATPPPAATPAPTTTP-PAATPAPSA 72



EST assemble image


clone accession position
1 CM013b03_r AV387042 1 546
2 LCL032b11_r AV627798 174 607




Chlamydomonas reinhardtii
Kazusa DNA Research Institute