KCC001053A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001053A_C01 KCC001053A_c01
CTGTTGCATAACGTTACTTGAACCGGTCAGCGAACCCATAACCAGCTTACGGGACCACTT
CGTTCTGCCGATCTCTTACGATCTCTTTCCCAACCTCTCGCAACCATGGCCCAGGCTCTG
CCCCCGCTGCCTTACGACTATGGCTCGCTGGAGCCGCATGTGGATGCCACCACCATGAAC
ATCCACCACACCAAGCACCACCAGACCTACGTGAACAACCTGAACGCGGCTCTCGACAAG
TTCCCCGAGCTCAAGGACCTTGGCCTGGTGGACCTGAACAAGGCCGTGGGCACCGCATAA
GCTGCCTAAGGATGTCGCCACTGTCATCCGCCAACAACGGCGGTGGCCACTACAACCACA
GCTTCTTCTGGAAGGTGATGACCAACCCCTCCAACACCAACGGCCCCAACGGCGACGTGA
AGGCCGCGATCGAGGCGTCCTTCGGCTCCGTGGACGAGATGAAGGCCAAGTTCAACGCCG
CTGCTGCTGGCCGCTTCGGCTCGGGTTGGGCCTGGCTGAGTGTCAAGCCCGACGGCTCCC
TGTCGATCGACTCCACCCCCAACCAGGACAACCCGCTGATGACCGCGCTGCCGGACGTGG
CGGGCGGCATTCCGCTGCTGGGCCTGGACGTGTGGGAGCACGCCTACTACCTTAAGTACC
AGAACCGCCGCCCCGAGTACATCGCGGCCTGGTGGAACGTGGTCAACTGGGAGCAGGTGG
CCGAGAACTACAAGGCCGCCCAGGCCGGCACCGTGCCGCTGTGAATGGCCGCACCGCCAG
CAGCCGCGGGGGCAGGGGCAGCAGCAGCAGGAGCGCCGCCGCCTCCGTCTCGGCTGTGAG
GAGCGGAGCGGGGCTGCCTACCCTGTACGCTGTGCACCCTGCCGCGGCGCGGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001053A_C01 KCC001053A_c01
         (894 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q42684|SODM_CHLRE Superoxide dismutase [Mn], mitochondrial pr...   307  e-117
ref|NP_407488.1| superoxide dismutase [Mn] [Yersinia pestis] gi|...   170  3e-60
sp|P53655|SODM_YEREN Superoxide dismutase [Mn] gi|1237254|emb|CA...   174  3e-60
ref|NP_927445.1| superoxide dismutase [Mn] [Photorhabdus lumines...   169  5e-60
sp|P00449|SODM_BACST Superoxide dismutase [Mn] gi|1070456|pir||D...   172  6e-59

>sp|Q42684|SODM_CHLRE Superoxide dismutase [Mn], mitochondrial precursor
           gi|7433341|pir||T08047 superoxide dismutase (EC
           1.15.1.1) (Mn) - Chlamydomonas reinhardtii
           gi|973176|gb|AAA80639.1| Mn superoxide dismutase
          Length = 218

 Score =  307 bits (786), Expect(3) = e-117
 Identities = 143/143 (100%), Positives = 143/143 (100%)
 Frame = +3

Query: 333 NNGGGHYNHSFFWKVMTNPSNTNGPNGDVKAAIEASFGSVDEMKAKFNAAAAGRFGSGWA 512
           NNGGGHYNHSFFWKVMTNPSNTNGPNGDVKAAIEASFGSVDEMKAKFNAAAAGRFGSGWA
Sbjct: 76  NNGGGHYNHSFFWKVMTNPSNTNGPNGDVKAAIEASFGSVDEMKAKFNAAAAGRFGSGWA 135

Query: 513 WLSVKPDGSLSIDSTPNQDNPLMTALPDVAGGIPLLGLDVWEHAYYLKYQNRRPEYIAAW 692
           WLSVKPDGSLSIDSTPNQDNPLMTALPDVAGGIPLLGLDVWEHAYYLKYQNRRPEYIAAW
Sbjct: 136 WLSVKPDGSLSIDSTPNQDNPLMTALPDVAGGIPLLGLDVWEHAYYLKYQNRRPEYIAAW 195

Query: 693 WNVVNWEQVAENYKAAQAGTVPL 761
           WNVVNWEQVAENYKAAQAGTVPL
Sbjct: 196 WNVVNWEQVAENYKAAQAGTVPL 218

 Score =  135 bits (339), Expect(3) = e-117
 Identities = 63/63 (100%), Positives = 63/63 (100%)
 Frame = +1

Query: 106 MAQALPPLPYDYGSLEPHVDATTMNIHHTKHHQTYVNNLNAALDKFPELKDLGLVDLNKA 285
           MAQALPPLPYDYGSLEPHVDATTMNIHHTKHHQTYVNNLNAALDKFPELKDLGLVDLNKA
Sbjct: 1   MAQALPPLPYDYGSLEPHVDATTMNIHHTKHHQTYVNNLNAALDKFPELKDLGLVDLNKA 60

Query: 286 VGT 294
           VGT
Sbjct: 61  VGT 63

 Score = 25.0 bits (53), Expect(3) = e-117
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 299 KLPKDVATVIR 331
           KLPKDVATVIR
Sbjct: 65  KLPKDVATVIR 75

>ref|NP_407488.1| superoxide dismutase [Mn] [Yersinia pestis]
           gi|22127949|ref|NP_671372.1| superoxide dismutase,
           manganese [Yersinia pestis KIM] gi|25285818|pir||AG0493
           superoxide dismutase (EC 1.15.1.1) [imported] - Yersinia
           pestis (strain CO92) gi|15981956|emb|CAC93515.1|
           superoxide dismutase [Mn] [Yersinia pestis CO92]
           gi|21961091|gb|AAM87623.1|AE014009_5 superoxide
           dismutase, manganese [Yersinia pestis KIM]
          Length = 207

 Score =  170 bits (431), Expect(2) = 3e-60
 Identities = 80/137 (58%), Positives = 96/137 (69%)
 Frame = +3

Query: 333 NNGGGHYNHSFFWKVMTNPSNTNGPNGDVKAAIEASFGSVDEMKAKFNAAAAGRFGSGWA 512
           NN GGH NHS FWK +   +   G   D+KAAIE  FGSVD  K KF  AAA RFGSGWA
Sbjct: 74  NNAGGHANHSLFWKGLKLGTTLAG---DLKAAIERDFGSVDSFKEKFEQAAATRFGSGWA 130

Query: 513 WLSVKPDGSLSIDSTPNQDNPLMTALPDVAGGIPLLGLDVWEHAYYLKYQNRRPEYIAAW 692
           WL +K DG L++ ST NQD+PLM        G P++GLDVWEHAYYLK+QNRRP+YI A+
Sbjct: 131 WLVLKDDGKLAVVSTANQDSPLMGEAVSGVSGFPIVGLDVWEHAYYLKFQNRRPDYIKAF 190

Query: 693 WNVVNWEQVAENYKAAQ 743
           WNVVNW++ A  +  A+
Sbjct: 191 WNVVNWDEAAARFAQAK 207

 Score = 84.7 bits (208), Expect(2) = 3e-60
 Identities = 38/59 (64%), Positives = 43/59 (72%)
 Frame = +1

Query: 106 MAQALPPLPYDYGSLEPHVDATTMNIHHTKHHQTYVNNLNAALDKFPELKDLGLVDLNK 282
           M+ +LP LPY Y +LEPH D  TM IHHTKHHQTYVNN N  L+ FPEL DL + DL K
Sbjct: 1   MSYSLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANTVLESFPELADLSVEDLIK 59

>sp|P53655|SODM_YEREN Superoxide dismutase [Mn] gi|1237254|emb|CAA65596.1| sodA [Yersinia
           enterocolitica]
          Length = 207

 Score =  174 bits (442), Expect(2) = 3e-60
 Identities = 82/137 (59%), Positives = 98/137 (70%)
 Frame = +3

Query: 333 NNGGGHYNHSFFWKVMTNPSNTNGPNGDVKAAIEASFGSVDEMKAKFNAAAAGRFGSGWA 512
           NN GGH NHS FWK +   +   G   D+KAAIE  FGSVD  K KF AAAA RFGSGWA
Sbjct: 74  NNAGGHANHSLFWKGLKLGTTLTG---DLKAAIERDFGSVDSFKEKFEAAAATRFGSGWA 130

Query: 513 WLSVKPDGSLSIDSTPNQDNPLMTALPDVAGGIPLLGLDVWEHAYYLKYQNRRPEYIAAW 692
           WL +K DG L++ ST NQD+PLM      A G P++GLDVWEHAYYLK+QNRRP+YI A+
Sbjct: 131 WLVLKDDGKLAVVSTANQDSPLMGEAVSGASGFPIVGLDVWEHAYYLKFQNRRPDYIKAF 190

Query: 693 WNVVNWEQVAENYKAAQ 743
           WNVVNW++ A  +  A+
Sbjct: 191 WNVVNWDEAAARFAQAK 207

 Score = 80.5 bits (197), Expect(2) = 3e-60
 Identities = 36/59 (61%), Positives = 41/59 (69%)
 Frame = +1

Query: 106 MAQALPPLPYDYGSLEPHVDATTMNIHHTKHHQTYVNNLNAALDKFPELKDLGLVDLNK 282
           M+ +LP LPY Y +LEPH D  TM IHHTKHHQTYVNN N  L+ FPEL    + DL K
Sbjct: 1   MSYSLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANTVLESFPELAKFSVEDLIK 59

>ref|NP_927445.1| superoxide dismutase [Mn] [Photorhabdus luminescens subsp.
           laumondii TTO1] gi|36783524|emb|CAE12370.1| superoxide
           dismutase [Mn] [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 208

 Score =  169 bits (427), Expect(2) = 5e-60
 Identities = 78/134 (58%), Positives = 95/134 (70%)
 Frame = +3

Query: 333 NNGGGHYNHSFFWKVMTNPSNTNGPNGDVKAAIEASFGSVDEMKAKFNAAAAGRFGSGWA 512
           NN GGH NHS FWK +   +   GP   +K AIE  FGS+D  K KF  AAA RFGSGWA
Sbjct: 74  NNAGGHANHSLFWKGLKLGTTLQGP---LKEAIERDFGSIDSFKEKFEQAAATRFGSGWA 130

Query: 513 WLSVKPDGSLSIDSTPNQDNPLMTALPDVAGGIPLLGLDVWEHAYYLKYQNRRPEYIAAW 692
           WL +K DG L++ ST NQD+PLM      A G P+ GLDVWEHAYYL+YQNRRP+YI A+
Sbjct: 131 WLVLKDDGKLAVVSTANQDSPLMGEAISGASGYPITGLDVWEHAYYLQYQNRRPDYIKAF 190

Query: 693 WNVVNWEQVAENYK 734
           W+VVNW++ A+ Y+
Sbjct: 191 WSVVNWDEAAKRYQ 204

 Score = 85.5 bits (210), Expect(2) = 5e-60
 Identities = 38/57 (66%), Positives = 44/57 (76%)
 Frame = +1

Query: 106 MAQALPPLPYDYGSLEPHVDATTMNIHHTKHHQTYVNNLNAALDKFPELKDLGLVDL 276
           M+ +LP LPY Y +LEPH D  TM IHHTKHHQTYVNN N+AL+ FPEL  LG+ DL
Sbjct: 1   MSYSLPSLPYSYEALEPHFDKQTMEIHHTKHHQTYVNNTNSALEAFPELAGLGIDDL 57

>sp|P00449|SODM_BACST Superoxide dismutase [Mn] gi|1070456|pir||DSBSNF superoxide
           dismutase (EC 1.15.1.1) (Mn) - Bacillus
           stearothermophilus gi|143203|gb|AAA22600.1| manganese
           superoxide dismutase (EC 1.15.1.1)
           gi|143552|gb|AAA22765.1| Mn-superoxide dismutase
           gi|143555|gb|AAA22767.1| Mn-superoxide dismutase
          Length = 204

 Score =  172 bits (437), Expect(2) = 6e-59
 Identities = 83/138 (60%), Positives = 100/138 (72%)
 Frame = +3

Query: 333 NNGGGHYNHSFFWKVMTNPSNTNGPNGDVKAAIEASFGSVDEMKAKFNAAAAGRFGSGWA 512
           NNGGGH NHS FW +++ P+    P G++  AI   FGS    K +F+ AAAGRFGSGWA
Sbjct: 74  NNGGGHANHSLFWTILS-PNGGGEPTGELADAINKKFGSFTAFKDEFSKAAAGRFGSGWA 132

Query: 513 WLSVKPDGSLSIDSTPNQDNPLMTALPDVAGGIPLLGLDVWEHAYYLKYQNRRPEYIAAW 692
           WL V  +G L I STPNQD+P+M       G  P+LGLDVWEHAYYLKYQNRRPEYIAA+
Sbjct: 133 WLVVN-NGELEITSTPNQDSPIME------GKTPILGLDVWEHAYYLKYQNRRPEYIAAF 185

Query: 693 WNVVNWEQVAENYKAAQA 746
           WNVVNW++VA+ Y  A+A
Sbjct: 186 WNVVNWDEVAKRYSEAKA 203

 Score = 78.2 bits (191), Expect(2) = 6e-59
 Identities = 34/53 (64%), Positives = 41/53 (77%)
 Frame = +1

Query: 118 LPPLPYDYGSLEPHVDATTMNIHHTKHHQTYVNNLNAALDKFPELKDLGLVDL 276
           LP LPY Y +LEPH+D  TMNIHHTKHH TYV NLNAAL+  P+L++  L +L
Sbjct: 5   LPALPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALEGHPDLQNKSLEEL 57



EST assemble image


clone accession position
1 MX035a10_r BP087461 1 359
2 LC019g05_r AV620261 1 421
3 LCL089f05_r AV631158 6 373
4 MXL083g01_r BP097930 13 374
5 HC099c06_r AV639430 17 452
6 MX048e06_r BP087980 17 353
7 CM056d05_r AV390290 17 617
8 LCL097d01_r AV631635 24 364
9 LC084g05_r AV624934 26 525
10 LC068d10_r AV623771 26 524
11 MX249h10_r BP092113 26 596
12 LC008b10_r AV619426 26 505
13 LC035e09_r AV621401 26 497
14 LC066b06_r AV623603 26 527
15 LC040c01_r AV621728 26 555
16 LC012c01_r AV619721 26 536
17 LC046d09_r AV622195 26 551
18 LC024g08_r AV620641 26 562
19 MX246d12_r BP091923 26 583
20 LC031c09_r AV621105 26 571
21 HC053b03_r AV635945 31 492
22 HC057d02_r AV636276 41 455
23 CM012h10_r AV387121 42 546
24 MX012c06_r BP086586 46 444
25 CM041d12_r AV389387 60 349
26 MX239h02_r BP091493 112 361
27 HC057b04_r AV636256 333 798
28 CM093d12_r AV392992 502 896




Chlamydomonas reinhardtii
Kazusa DNA Research Institute