KCC001049A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001049A_C01 KCC001049A_c01
CTTTCGTGAAGAATCGCAATCCATTCTGCTAGCAGCTCTTGAGGTTGCAGGGTATGTTGT
AGCGACTTGAGCGGTTGTTACAGCTCAGACGGGAACTCTGAGCTTGCTTATAAACGATTT
CCCAGTTTGAGTAGTGTTTACAAGCTTTGTTGACGAAACAAGGCGTCACTTGAGCCCCTG
AAAGCTTGCAGCACTGGCTAGGGCTTTGCCAACGACGACCTGTCGCGCGCCTTCCACCCG
GACAGCCTAACTCAAGGGTTCGCCCACGACACTGTATGCAGCCTGCCTACCAAGTCTCCA
CCATGGAGTCCTCGTCCGGCCTCGCTCGTGGGAAGTCGGCCTCGCCGACAGCCATGGCGA
AGGTGGGTCTTGAGGCGCTTTCCATGGCGCTCATGACTATGGCAACACCGCTGCTGCTGC
TGGTGGCACTCGGTCTGTCGGTATTCAAGTCAATTGTGGCTTGGGCACGCACAGAGTGGC
ATCTGAAGGCCTAACACAGCTCCGGCAGGGGGTCTTGTCACCCAGCCTGTCACCAGTCAC
CCTCCGATCACCCACTGGTCACCCACTGGTCGCCCACCGGTCACCCACCGGCCACCCACC
GGTGGGATTATTTAAATGATAGGGACCACCCAGTGAGGGTCGGCTTCCAGCAACCTAAAA
CCCTAAACCCTAAATGACAGTGATGCCCCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001049A_C01 KCC001049A_c01
         (690 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_301558.1| similar to Protein kinase PKX1 [Homo sapiens]         37  0.37
ref|XP_310616.1| ENSANGP00000020759 [Anopheles gambiae] gi|21294...    36  0.63
ref|XP_298502.1| hypothetical protein XP_298502 [Homo sapiens]         35  0.82
ref|NP_730262.2| CG13731-PA [Drosophila melanogaster] gi|2838049...    35  1.1
ref|ZP_00089282.1| COG0655: Multimeric flavodoxin WrbA [Azotobac...    35  1.4

>ref|XP_301558.1| similar to Protein kinase PKX1 [Homo sapiens]
          Length = 1593

 Score = 36.6 bits (83), Expect = 0.37
 Identities = 23/64 (35%), Positives = 26/64 (39%), Gaps = 1/64 (1%)
 Frame = +1

Query: 415  CCWWHSVCRYSSQLWLGHAQSGI*RPNTAPAGGLVTQPVTSHPPITHWSPTG-RPPVTHR 591
            C W  S  R SS     H      RP  +       +P  SHPP+ H  P G  PPV H 
Sbjct: 1296 CVWKESSARSSSASGRNHPPVPHLRPEGSHPPVPHLRPEGSHPPVPHLRPEGSHPPVPHL 1355

Query: 592  PPTG 603
             P G
Sbjct: 1356 RPEG 1359

 Score = 33.5 bits (75), Expect = 3.1
 Identities = 18/41 (43%), Positives = 21/41 (50%), Gaps = 1/41 (2%)
 Frame = +1

Query: 487 RPNTAPAGGLVTQPVTSHPPITHWSPT-GRPPVTHRPPTGG 606
           RP++A  G        SHPP+ H  P  G PPV H  P GG
Sbjct: 710 RPSSASEG--------SHPPVPHLRPEGGHPPVPHLRPEGG 742

 Score = 32.0 bits (71), Expect = 9.1
 Identities = 24/69 (34%), Positives = 30/69 (42%), Gaps = 7/69 (10%)
 Frame = +1

Query: 418 CWWHSVCRYSSQLWLGHAQSGI*RPNTA------PAGGLVTQPVTSHPPITHWSPTG-RP 576
           C W  V R S    L  + +   RP++A      P   L  +   SHPP+ H  P G  P
Sbjct: 797 CVWKEVIRPSLICVLKESST---RPSSASGRNHPPLPHLRPEGEGSHPPVPHLRPEGSHP 853

Query: 577 PVTHRPPTG 603
           PV H  P G
Sbjct: 854 PVPHLRPEG 862

>ref|XP_310616.1| ENSANGP00000020759 [Anopheles gambiae] gi|21294177|gb|EAA06322.1|
           ENSANGP00000020759 [Anopheles gambiae str. PEST]
          Length = 683

 Score = 35.8 bits (81), Expect = 0.63
 Identities = 28/68 (41%), Positives = 32/68 (46%), Gaps = 4/68 (5%)
 Frame = +2

Query: 209 PTTTCRAPSTRTA*LKGSPTTLYAACLPSLHHG----VLVRPRSWEVGLADSHGEGGS*G 376
           PT   R   TR   LKG   ++ AA  P    G    VL R   W+VGL   HG G   G
Sbjct: 491 PTAFQRECFTRV--LKGF-LSVAAAVFPVRASGTTFDVLARKALWDVGLDYGHGTGHGIG 547

Query: 377 AFHGAHDY 400
           AF G H+Y
Sbjct: 548 AFLGVHEY 555

>ref|XP_298502.1| hypothetical protein XP_298502 [Homo sapiens]
          Length = 225

 Score = 35.4 bits (80), Expect = 0.82
 Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 13/61 (21%)
 Frame = -1

Query: 432 RVPPAAAAVLP*S*APWKAPQDPPSPWLSARPTSHE-------------RGRTRTPWWRL 292
           R PP A    P    PW  P  PPSP  S  PT  +             RG+   PW R 
Sbjct: 47  RSPPHAGTARPRPRGPWPCPAPPPSPRRSPGPTRLQSALRLRGRIRRKGRGQVALPWLRA 106

Query: 291 G 289
           G
Sbjct: 107 G 107

>ref|NP_730262.2| CG13731-PA [Drosophila melanogaster] gi|28380492|gb|AAF49349.4|
           CG13731-PA [Drosophila melanogaster]
          Length = 926

 Score = 35.0 bits (79), Expect = 1.1
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 490 PNTAPAGGLVTQPVTSHPPITHWSPTGR--PPVTHRPPT 600
           P T P     T+P T+ PP T+  PT +  PPVT R PT
Sbjct: 320 PRTPPPTRPPTKPPTTRPPATYLPPTNKPPPPVTTRRPT 358

 Score = 32.7 bits (73), Expect = 5.3
 Identities = 17/38 (44%), Positives = 21/38 (54%), Gaps = 2/38 (5%)
 Frame = +1

Query: 490 PNTAPAGGLVTQPVTSHPPITHWSPTGR--PPVTHRPP 597
           P T P     T+P T+ PP T+  PT +  PPVT R P
Sbjct: 277 PRTPPPTRPPTRPPTTRPPATYLPPTNKPLPPVTTRLP 314

 Score = 32.7 bits (73), Expect = 5.3
 Identities = 17/38 (44%), Positives = 21/38 (54%), Gaps = 2/38 (5%)
 Frame = +1

Query: 490 PNTAPAGGLVTQPVTSHPPITHWSPTGR--PPVTHRPP 597
           P T P     T+P T+ PP T+  PT +  PPVT R P
Sbjct: 234 PRTPPPTRPPTRPPTTRPPATYLPPTNKPLPPVTTRLP 271

>ref|ZP_00089282.1| COG0655: Multimeric flavodoxin WrbA [Azotobacter vinelandii]
          Length = 344

 Score = 34.7 bits (78), Expect = 1.4
 Identities = 22/49 (44%), Positives = 27/49 (54%), Gaps = 2/49 (4%)
 Frame = +2

Query: 257 GSPTTLYAACLPSLHHGVLV--RPRSWEVGLADSHGEGGS*GAFHGAHD 397
           G  TTL +  LP LHHG+L+   P S E  L ++ G G   GA H A D
Sbjct: 265 GQETTLLSMLLPLLHHGMLICGLPYS-EAALLETRGGGTPYGASHHAGD 312



EST assemble image


clone accession position
1 MX217h07_r BP090040 1 412
2 LC059d09_r AV623137 63 600
3 LC019h07_r AV620272 131 623
4 MX042h02_r BP087750 134 445
5 HC097c08_r AV639279 144 528
6 CM012g11_r AV387122 145 451
7 LC036d06_r AV621456 163 707
8 LC069d07_r AV623840 168 622
9 HC067h06_r AV637041 176 690
10 HC073c04_r AV637447 176 798
11 LC050h07_r AV622531 241 709
12 LC018e04_r AV620166 254 752
13 HC024f04_r AV633735 267 654
14 LC065g05_r AV623569 271 802
15 LC037g09_r AV621558 280 806




Chlamydomonas reinhardtii
Kazusa DNA Research Institute