KCC001045A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001045A_C01 KCC001045A_c01
cagaattgctgcaatCAGCACCGTGCTTACAACCTCACCCGCTTGCACTTACGTCGAGGC
AGGCAGCCCACCGCTCGCCTTCGTTTCTTCCTTCTTGCCCATATTGAGCGCCATGGCAAC
TCCTTGCGTCCGCGCATCCCCTTCTGCTGGCGCTCTCCGCTCAGGGCGCGCTGCCCGCGC
TGCGCTGCGGCCCGTGGCTGTGGCCGTGCCTCGTAAGCGCCTCGCTGCGCCGCTGTCCAG
CGCCGCAACCGCGTCGGCGGTGACAGCGACTGAGCAGGCAGTCGGCGAGGTCGCGATCGC
AAACGGGGTGCACATCCTCACCGCCGACACGTACCACGGCTTCCTGGAGAAGAATGCTGA
GAAGCTTGTGGTTACGGACTTCTATGCCGTCTGGTGCGGCCCCTGTAAGGTCATTGCGCC
GGAGATCGAGCGCCTGGCTAATGAGATGGACGCAAGCCAGGTTGTGTTTGCCAAGATGGA
CTGCGGTGCCACCAACGAGTCCAAGAAGCTGGCCATGGCCCTAAACATCAAGGCGCTGCC
CACCTTCCACCTCTACCGCAACAGCAAGCAGATTGACAGCATGACAGGCGCCAAGATCAA
GGCGCTGACCGACCTGATCGGCAAGCACCTCTAAACGCGCCCCCATCCGGCAGCGGGTGA
GCCGGTCGCATCATGGTGCCTGCGATTTTTGGCCGCGGCTGGCGTTCCCTTTCTTCGGGT
TGGTTGTAGTAGCACGACTACCTAATGCGCATGAACACAGCACACCACAGCAACACAGCA
CGCTGCGCGGCAACATGCCAGCCGAAAAAGGAGAGAAGAGAACAAGAGCGGTTTTGGTAT
TTCAACTTCTGTTTGTTTCGTGCCGAAAGGATTACGCGAGCGGCAGGTGTAAATCGGCAA
TGCACCTGGAGGAGGGACGGCAGTTTTGATGAGAAGCAAACGTCGGTGGATGAAGCCGTT
TGGTGCGGGTTTTGCGGGACCTAGTCTATGGAGCCTCTGGAGCATGCCGGTTAAGGGCTC
GACATGGCTTGGTCAGAGATGCACAGGGGAAGAATTGGGGCATGGTGATAGTATCGTTGT
GTAGAGGCGCACCAAGATGGCTGCAGGCAATTATCAAGTTGTTGCAGTGCTGCAGAGGTT
CGCCTGCATACACGTGGTGAACGTGATAGGTAGTGTGTGGTTTGCGGTGTGATGTGTGTG
TGTGAACCTCTCCTTGTTGAGGTGTGGTGGGTGCACGGAATCCCTGTTGCAGGCCAGCCA
TATCCAGCTGGTCCAACACTGCCGGAAGAAGGCGGGTCATTGAGAGTCGCATAGCATATT
ATTTCGTTTAGGTGGATGTCGTGCCTCACGTGCGTGCCAATAGCGCCGCATGGGCATCGG
TCATCGGGTCATTGGTGAGCAAGGGGGTGTTGGGCACAGGAGTTGTGGCCGCCGCTGGGT
GCTGGACAAGGAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001045A_C01 KCC001045A_c01
         (1454 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO20261.1| thioredoxin f1 [Chlamydomonas reinhardtii]             338  2e-91
dbj|BAB90300.1| putative thioredoxin [Oryza sativa (japonica cul...    91  7e-17
gb|AAD52699.1|AF091538_1 thioredoxin [Schistosoma japonicum]           86  1e-15
sp|Q9DGI3|THIO_ICTPU Thioredoxin gi|9837585|gb|AAG00612.1|AF2936...    84  6e-15
gb|AAH49031.1| Unknown (protein for MGC:56493) [Danio rerio]           82  2e-14

>gb|AAO20261.1| thioredoxin f1 [Chlamydomonas reinhardtii]
          Length = 173

 Score =  338 bits (866), Expect = 2e-91
 Identities = 173/173 (100%), Positives = 173/173 (100%)
 Frame = +2

Query: 113 MATPCVRASPSAGALRSGRAARAALRPVAVAVPRKRLAAPLSSAATASAVTATEQAVGEV 292
           MATPCVRASPSAGALRSGRAARAALRPVAVAVPRKRLAAPLSSAATASAVTATEQAVGEV
Sbjct: 1   MATPCVRASPSAGALRSGRAARAALRPVAVAVPRKRLAAPLSSAATASAVTATEQAVGEV 60

Query: 293 AIANGVHILTADTYHGFLEKNAEKLVVTDFYAVWCGPCKVIAPEIERLANEMDASQVVFA 472
           AIANGVHILTADTYHGFLEKNAEKLVVTDFYAVWCGPCKVIAPEIERLANEMDASQVVFA
Sbjct: 61  AIANGVHILTADTYHGFLEKNAEKLVVTDFYAVWCGPCKVIAPEIERLANEMDASQVVFA 120

Query: 473 KMDCGATNESKKLAMALNIKALPTFHLYRNSKQIDSMTGAKIKALTDLIGKHL 631
           KMDCGATNESKKLAMALNIKALPTFHLYRNSKQIDSMTGAKIKALTDLIGKHL
Sbjct: 121 KMDCGATNESKKLAMALNIKALPTFHLYRNSKQIDSMTGAKIKALTDLIGKHL 173

>dbj|BAB90300.1| putative thioredoxin [Oryza sativa (japonica cultivar-group)]
          Length = 187

 Score = 90.5 bits (223), Expect = 7e-17
 Identities = 60/183 (32%), Positives = 88/183 (47%), Gaps = 1/183 (0%)
 Frame = +2

Query: 74  LAFVSSFLPILSAMATPCVRASPSA-GALRSGRAARAALRPVAVAVPRKRLAAPLSSAAT 250
           L+  SS  P  S   + C  A+     AL  G  A        V+ P  R   P+ S+ +
Sbjct: 5   LSVSSSHGPASSPAISTCRPAACGRFPALLGGGVASQRRSLTVVSGPETRAVIPVRSSGS 64

Query: 251 ASAVTATEQAVGEVAIANGVHILTADTYHGFLEKNAEKLVVTDFYAVWCGPCKVIAPEIE 430
            +A    E     VA+   V  +  DT+   ++    K+VV D Y  WCGPCKV+AP+ +
Sbjct: 65  DTATVGAEAEA--VAVTGQVTEVNKDTFWPIVKSAGPKVVVLDMYTQWCGPCKVMAPKFQ 122

Query: 431 RLANEMDASQVVFAKMDCGATNESKKLAMALNIKALPTFHLYRNSKQIDSMTGAKIKALT 610
            ++ +     VVF K+DC   N  K LA  L IK +PTF + ++ K +  +TGAK+  L 
Sbjct: 123 EMSEK--DQDVVFLKLDCNQDN--KSLAKELGIKVVPTFKILKDGKVVKEVTGAKLDELI 178

Query: 611 DLI 619
             I
Sbjct: 179 QAI 181

>gb|AAD52699.1|AF091538_1 thioredoxin [Schistosoma japonicum]
          Length = 106

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 42/111 (37%), Positives = 69/111 (61%)
 Frame = +2

Query: 296 IANGVHILTADTYHGFLEKNAEKLVVTDFYAVWCGPCKVIAPEIERLANEMDASQVVFAK 475
           ++N +HI T D +  FL++N +KL+V DF+A WCGPCK IAP  E L+ +  A   ++ K
Sbjct: 1   MSNVLHIETDDDFDSFLKENKDKLIVVDFFATWCGPCKKIAPAFEALSADRSA---LYVK 57

Query: 476 MDCGATNESKKLAMALNIKALPTFHLYRNSKQIDSMTGAKIKALTDLIGKH 628
           +D     E+   A   ++ A+PTF + +N +++D++ GA I+ +   I KH
Sbjct: 58  VDVDKLEET---ARKYDVSAMPTFIVIKNGEKVDTVVGASIENVEAAIRKH 105

>sp|Q9DGI3|THIO_ICTPU Thioredoxin gi|9837585|gb|AAG00612.1|AF293651_1 thioredoxin
           [Ictalurus punctatus]
          Length = 107

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 41/107 (38%), Positives = 60/107 (55%)
 Frame = +2

Query: 308 VHILTADTYHGFLEKNAEKLVVTDFYAVWCGPCKVIAPEIERLANEMDASQVVFAKMDCG 487
           VHI   + +   L+   +KLVV DF A WCGPC+ I P  E L+   D   VVF K+D  
Sbjct: 3   VHIENLNAFSAALKNAGDKLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVD-- 60

Query: 488 ATNESKKLAMALNIKALPTFHLYRNSKQIDSMTGAKIKALTDLIGKH 628
             +++  ++   +IK +PTFH Y+N ++ID  +GA  + L   I  H
Sbjct: 61  -VDDAADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKINDH 106

>gb|AAH49031.1| Unknown (protein for MGC:56493) [Danio rerio]
          Length = 108

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 39/101 (38%), Positives = 61/101 (59%)
 Frame = +2

Query: 326 DTYHGFLEKNAEKLVVTDFYAVWCGPCKVIAPEIERLANEMDASQVVFAKMDCGATNESK 505
           D +   L    +KLVV DF A WCGPC+ IAP  + L+   D S VVF K+D    ++++
Sbjct: 9   DGFDKALAGAGDKLVVVDFTATWCGPCQSIAPFYKGLSENPDYSNVVFLKVD---VDDAQ 65

Query: 506 KLAMALNIKALPTFHLYRNSKQIDSMTGAKIKALTDLIGKH 628
            +A +  IK +PTFH Y+N K++D  +G+    L +++ +H
Sbjct: 66  DVAQSCEIKCMPTFHFYKNGKKLDDFSGSNQTKLEEMVKQH 106



EST assemble image


clone accession position
1 HCL083g06_r AV644199 1 509
2 HCL060e11_r AV642922 16 512
3 LCL006f01_r AV626308 19 457
4 LC057d06_r AV622983 24 510
5 CM018a06_r AV387238 25 455
6 MX209c09_r BP089534 38 347
7 HC012a10_r AV632745 64 505
8 MX223f08_r BP090418 218 605
9 HC041c12_r AV635056 389 839
10 LCL002d12_r AV626107 431 822
11 MX260b09_r BP092865 529 971
12 HC038c06_r AV634814 556 1106
13 CM012g01_r AV387167 603 1089
14 LC011b08_r AV619642 722 1270
15 HC091h08_r AV638873 768 1170
16 CM034b10_r AV388656 876 1427
17 CM040d04_r AV389205 896 1455




Chlamydomonas reinhardtii
Kazusa DNA Research Institute