KCC001034A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001034A_C01 KCC001034A_c01
CAAAATGCAGCTACAACTCCGCTCGCTTCGGCAAACACGTCAAGGCGGCGCTGCTCGGGT
GCAACCCTGCACGCACAGCGTTCGCCCTGTCCAATTTGCTCGCCGACCTCAATTTTCGAC
TGATATTAAAGCTTCAGCTACACCCACTGCTCCTGGCGGGCTCGAAGCACCGTGCAGCCT
GAGAAGGATGTGCCCGGGCATGTCCTCGTTCCTGGCACAGCCCTTAAGCTGGGACACAGA
ACAATCTAGTCGCTGTCATCGTTCAGCACATCGACACCGGCGAGGTGATGATGCAGGCGT
TCGCGGACCGGGCTGCCATCAGCGAGACTCTGCAGACGGGCCTGGCAACCTTTTACAGCC
GCTCCCGCGGCGGGCGCTGGTGCAAGGGCGAGACGTCTGGGCACTTCATCAACGTCTTCA
ACGTGTTCACCGACTGCGACCGCGACTCCATCATCTATCTATCAGATCCCATCGGGCCCG
CCTGCCACACCGGCGCGCGGACGTGCTGGTTCAAGGAGGTGGAGCTGCAAGGGCAGGAGG
GCGCGGTCGTGAGCCACGCCGGCGCACAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001034A_C01 KCC001034A_c01
         (569 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_174469.1| phosphoribosyl-ATP pyrophosphohydrolase (At-IE)...   115  4e-25
ref|NP_294456.1| phosphoribosyl-AMP cyclohydrolase/phosphoribosy...   105  3e-22
dbj|BAA88183.1| unnamed protein product [Oryza sativa (japonica ...   105  4e-22
ref|NP_928855.1| phosphoribosyl-AMP cyclohydrolase (PRA-CH) / ph...   101  6e-21
ref|ZP_00015110.1| COG0139: Phosphoribosyl-AMP cyclohydrolase [R...   100  1e-20

>ref|NP_174469.1| phosphoribosyl-ATP pyrophosphohydrolase (At-IE) [Arabidopsis
           thaliana] gi|11132859|sp|O82768|HIS2_ARATH Histidine
           biosynthesis bifunctional protein hisIE, chloroplast
           precursor [Includes: Phosphoribosyl-AMP cyclohydrolase
           (PRA-CH); Phosphoribosyl-ATP pyrophosphatase (PRA-PH)]
           gi|11358620|pir||T51812 phosphoribosyl-AMP
           cyclohydrolase (EC 3.5.4.19) / phosphoribosyl-ATP
           diphosphatase (EC 3.6.1.31) [validated] - Arabidopsis
           thaliana gi|3461884|dbj|BAA32528.1| phosphoribosyl-ATP
           pyrophosphohydrolase [Arabidopsis thaliana]
           gi|3461886|dbj|BAA32529.1| phosphoribosyl-ATP
           pyrophosphohydrolase [Arabidopsis thaliana]
           gi|12321304|gb|AAG50725.1|AC079041_18 phosphoribosyl-ATP
           pyrophosphohydrolase (At-IE) [Arabidopsis thaliana]
           gi|15028395|gb|AAK76674.1| putative phosphoribosyl-ATP
           pyrophosphohydrolase At-IE [Arabidopsis thaliana]
           gi|19310753|gb|AAL85107.1| putative phosphoribosyl-ATP
           pyrophosphohydrolase At-IE [Arabidopsis thaliana]
           gi|21554409|gb|AAM63514.1| phosphoribosyl-ATP
           pyrophosphohydrolase At-IE [Arabidopsis thaliana]
          Length = 281

 Score =  115 bits (288), Expect = 4e-25
 Identities = 51/92 (55%), Positives = 65/92 (70%)
 Frame = +3

Query: 246 LVAVIVQHIDTGEVMMQAFADRAAISETLQTGLATFYSRSRGGRWCKGETSGHFINVFNV 425
           L   I Q++DTG V+MQ F +R A+S T+ +  ATF+SRSR   W KGETS +FIN+ +V
Sbjct: 66  LAVAIAQNVDTGAVLMQGFVNREALSTTISSRKATFFSRSRSTLWTKGETSNNFINILDV 125

Query: 426 FTDCDRDSIIYLSDPIGPACHTGARTCWFKEV 521
           + DCDRDSIIYL  P GP CHTG  TC++  V
Sbjct: 126 YVDCDRDSIIYLGTPDGPTCHTGEETCYYTSV 157

>ref|NP_294456.1| phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP
           pyrophosphohydrolase [Deinococcus radiodurans]
           gi|21362596|sp|Q9RWD6|HIS2_DEIRA Histidine biosynthesis
           bifunctional protein hisIE [Includes: Phosphoribosyl-AMP
           cyclohydrolase (PRA-CH); Phosphoribosyl-ATP
           pyrophosphatase (PRA-PH)] gi|7473330|pir||D75482
           phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) /
           phosphoribosyl-ATP diphosphatase (EC 3.6.1.31)
           [similarity] - Deinococcus radiodurans (strain R1)
           gi|6458442|gb|AAF10312.1|AE001929_5 phosphoribosyl-AMP
           cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase
           [Deinococcus radiodurans]
          Length = 218

 Score =  105 bits (263), Expect = 3e-22
 Identities = 47/92 (51%), Positives = 65/92 (70%)
 Frame = +3

Query: 240 NNLVAVIVQHIDTGEVMMQAFADRAAISETLQTGLATFYSRSRGGRWCKGETSGHFINVF 419
           + L+ V+ Q   +G V+MQA+ADRAA+  TL T  AT+YSRSRG +W KG+TSGH   V 
Sbjct: 12  SGLIPVVTQDARSGAVLMQAYADRAAVERTLDTREATYYSRSRGEQWVKGQTSGHTQRVV 71

Query: 420 NVFTDCDRDSIIYLSDPIGPACHTGARTCWFK 515
           +V  DCD DS++Y  +  GPACHTG  +C+++
Sbjct: 72  SVHVDCDGDSLLYRVEQTGPACHTGEYSCFYR 103

>dbj|BAA88183.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
          Length = 202

 Score =  105 bits (262), Expect = 4e-22
 Identities = 50/85 (58%), Positives = 61/85 (70%), Gaps = 2/85 (2%)
 Frame = +3

Query: 291 MQAFADRAAISETLQTGLATFYSRSRGGRWCKGETSGHFINVFNVFTDCDRDSIIYLSDP 470
           MQ FA++ A++ T+ T  ATFYSRSR   W KGETS +FINV ++F DCDRDSIIYL  P
Sbjct: 1   MQGFANKEALATTISTRKATFYSRSRSSLWTKGETSMNFINVHDIFLDCDRDSIIYLGKP 60

Query: 471 IGPACHTGARTCWFKEV--ELQGQE 539
            GP CHTGA TC++  V   LQG +
Sbjct: 61  DGPTCHTGAETCYYTSVYDALQGSK 85

>ref|NP_928855.1| phosphoribosyl-AMP cyclohydrolase (PRA-CH) / phosphoribosyl-ATP
           pyrophosphatase (PRA-PH) [Photorhabdus luminescens
           subsp. laumondii TTO1] gi|36784939|emb|CAE13857.1|
           phosphoribosyl-AMP cyclohydrolase (PRA-CH) /
           phosphoribosyl-ATP pyrophosphatase (PRA-PH)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 201

 Score =  101 bits (252), Expect = 6e-21
 Identities = 40/88 (45%), Positives = 65/88 (73%)
 Frame = +3

Query: 246 LVAVIVQHIDTGEVMMQAFADRAAISETLQTGLATFYSRSRGGRWCKGETSGHFINVFNV 425
           ++ VIVQH  +G+V+M  + ++ A++ T+ +G  TF+SRS+   W KGE+SGHF+N+ N+
Sbjct: 18  MMPVIVQHAISGDVLMMGYMNKEALNITISSGKITFFSRSKQRLWTKGESSGHFLNLVNI 77

Query: 426 FTDCDRDSIIYLSDPIGPACHTGARTCW 509
           + DCD D+++ L+DPIGP CH G  +C+
Sbjct: 78  YPDCDNDTLLALADPIGPTCHFGTHSCF 105

>ref|ZP_00015110.1| COG0139: Phosphoribosyl-AMP cyclohydrolase [Rhodospirillum rubrum]
          Length = 143

 Score =  100 bits (249), Expect = 1e-20
 Identities = 51/101 (50%), Positives = 66/101 (64%)
 Frame = +3

Query: 234 TQNNLVAVIVQHIDTGEVMMQAFADRAAISETLQTGLATFYSRSRGGRWCKGETSGHFIN 413
           T + LV VI Q  D+GEV+M A+ +R A+ ETL TG A ++SRSRG  W KGE+SG    
Sbjct: 20  TADGLVPVIAQQHDSGEVLMMAWMNREALEETLVTGKACYWSRSRGRLWRKGESSGQTQK 79

Query: 414 VFNVFTDCDRDSIIYLSDPIGPACHTGARTCWFKEVELQGQ 536
           V  +  DCD D+I+ L D  G ACHTG R+C+F EV   G+
Sbjct: 80  VLALRLDCDGDTILLLVDQTGVACHTGRRSCFFNEVGPTGE 120



EST assemble image


clone accession position
1 MX221h10_r BP090312 1 373
2 LC009a02_r AV619486 93 610
3 MX207d03_r BP089439 93 457
4 CM040e01_r AV389154 94 668
5 CM011f03_r AV386897 107 662




Chlamydomonas reinhardtii
Kazusa DNA Research Institute