>KCC001033A_C01 KCC001033A_c01
CACAGCGGCAGAGTTCAGCCGCTACCTCCGTCAGGTTCATTGCCTCCAAAGCCGGCCTGG
AGCCCCGCTGGCTCAAAAGATTTAAGTAGTCAAACATCAAGAAGCAGCAGCCGTGAGGAC
TTCACGATGTCGAAGCCCCCTCCGGCAGGTTGGACTGTTGATAAACATACCGATACTCCG
GACGTGGAGCACGGAAAGCCGCTTGTAAACTTAGAATTACGGAAGCAACCTAGCGCTCAT
GTGGATATGCTCCCACCGCCTCCCAAAGCCGCTTCGGAGCCCTCCACTGCAAAGGATGAG
TGGGTGCGCGGCGATCCGGGACCGTTCGGTCTGCTGTGCTTCGGTATGACCACATGCATG
CTCATGTTCGTCACGACTGGCTGGACCGACAAGCATTTCATTCCCACTGTCTTCTGCTAC
GCGATGTTCTACGGCGGCTTCGGGCAGTTTGTGGCCGGCGCGCTGGAGCTGATCAAGGGC
AACACCTTTGGCGGCACTGCCTTCGCCTCCTACGGCGCCTTCTGGATGGGCTGG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001033A_C01 KCC001033A_c01
         (534 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_246391.1| unknown [Pasteurella multocida] gi|12721831|gb|...    78  6e-14
ref|NP_393898.1| conserved hypothetical membrane protein [Thermo...    73  3e-12
ref|NP_404109.1| putative membrane protein [Yersinia pestis] gi|...    72  3e-12
ref|ZP_00031602.1| COG1584: Predicted membrane protein [Burkhold...    70  1e-11
ref|NP_618878.1| Fun34 related protein [Methanosarcina acetivora...    70  2e-11

>ref|NP_246391.1| unknown [Pasteurella multocida] gi|12721831|gb|AAK03536.1| unknown
           [Pasteurella multocida]
          Length = 188

 Score = 78.2 bits (191), Expect = 6e-14
 Identities = 39/84 (46%), Positives = 50/84 (59%)
 Frame = +1

Query: 283 STAKDEWVRGDPGPFGLLCFGMTTCMLMFVTTGWTDKHFIPTVFCYAMFYGGFGQFVAGA 462
           S++KD++   +PGP GL  F +TT +L  +  G+ D   I  V   A  +GG  Q +AG 
Sbjct: 2   SSSKDKYA--NPGPLGLCGFALTTWLLCLINGGFFDTQSIGLVLGMAFAFGGTAQMIAGM 59

Query: 463 LELIKGNTFGGTAFASYGAFWMGW 534
            E  KGNTFG TAF SYGAFW  W
Sbjct: 60  FEYKKGNTFGFTAFISYGAFWWSW 83

>ref|NP_393898.1| conserved hypothetical membrane protein [Thermoplasma acidophilum]
           gi|10639590|emb|CAC11562.1| conserved hypothetical
           membrane protein [Thermoplasma acidophilum]
          Length = 201

 Score = 72.8 bits (177), Expect = 3e-12
 Identities = 34/75 (45%), Positives = 42/75 (55%)
 Frame = +1

Query: 304 VRGDPGPFGLLCFGMTTCMLMFVTTGWTDKHFIPTVFCYAMFYGGFGQFVAGALELIKGN 483
           +  DP P GL  F  TT +L F+  G      +  V   A  YGG  Q V G+ E+ +GN
Sbjct: 13  IGADPAPLGLAGFAFTTFLLSFINAGLIPSSGVSVVLPLAFAYGGLAQLVTGSWEMRRGN 72

Query: 484 TFGGTAFASYGAFWM 528
           TFG TAF SYG+FWM
Sbjct: 73  TFGFTAFTSYGSFWM 87

>ref|NP_404109.1| putative membrane protein [Yersinia pestis]
           gi|22127581|ref|NP_671004.1| hypothetical protein
           [Yersinia pestis KIM] gi|25331232|pir||AH0057 probable
           membrane protein YPO0467 [imported] - Yersinia pestis
           (strain CO92) gi|15978559|emb|CAC89323.1| putative
           membrane protein [Yersinia pestis CO92]
           gi|21960688|gb|AAM87255.1|AE013974_3 hypothetical
           protein [Yersinia pestis KIM]
          Length = 203

 Score = 72.4 bits (176), Expect = 3e-12
 Identities = 35/72 (48%), Positives = 44/72 (60%)
 Frame = +1

Query: 313 DPGPFGLLCFGMTTCMLMFVTTGWTDKHFIPTVFCYAMFYGGFGQFVAGALELIKGNTFG 492
           +PGP GL+ FGMTT +L     G+     +  +    +FYGG  Q +AG LE  KGNTF 
Sbjct: 8   NPGPLGLMGFGMTTVLLNLHNAGFFPLSSV--ILSMGIFYGGLAQILAGLLEYKKGNTFA 65

Query: 493 GTAFASYGAFWM 528
            TAF SYGAFW+
Sbjct: 66  ATAFTSYGAFWL 77

>ref|ZP_00031602.1| COG1584: Predicted membrane protein [Burkholderia fungorum]
          Length = 347

 Score = 70.5 bits (171), Expect = 1e-11
 Identities = 32/71 (45%), Positives = 42/71 (59%)
 Frame = +1

Query: 313 DPGPFGLLCFGMTTCMLMFVTTGWTDKHFIPTVFCYAMFYGGFGQFVAGALELIKGNTFG 492
           +P   GL  F +TT +L  +  GW   + +  V   A  YGG  Q +AG +E+ +GNTFG
Sbjct: 143 NPASLGLAGFALTTWLLSMINAGWFSGNAMGMVLAVAFAYGGTAQALAGLMEIPRGNTFG 202

Query: 493 GTAFASYGAFW 525
            TAF SYGAFW
Sbjct: 203 ATAFLSYGAFW 213

>ref|NP_618878.1| Fun34 related protein [Methanosarcina acetivorans str. C2A]
           gi|19918102|gb|AAM07358.1| Fun34 related protein
           [Methanosarcina acetivorans str. C2A]
          Length = 201

 Score = 69.7 bits (169), Expect = 2e-11
 Identities = 34/72 (47%), Positives = 43/72 (59%)
 Frame = +1

Query: 313 DPGPFGLLCFGMTTCMLMFVTTGWTDKHFIPTVFCYAMFYGGFGQFVAGALELIKGNTFG 492
           +P P GL+ FGMTT +L     G+     +  +    +FYGG GQ +AG  E  KGNTFG
Sbjct: 22  NPAPLGLMGFGMTTVLLNIHNAGFYPLGAV--ILSMGIFYGGLGQVIAGIEEWKKGNTFG 79

Query: 493 GTAFASYGAFWM 528
            TAF SYG FW+
Sbjct: 80  ATAFTSYGLFWL 91

EST assemble image

clone accession position 1 MX052f10_r BP088143 1 455 2 HC042d09_r AV635141 32 462 3 HC037e03_r AV634754 35 529 4 LCL032c07_r AV627803 89 578 5 CM011e10_r AV386917 93 638

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