KCC001032A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001032A_C01 KCC001032A_c01
gagagaactagtctcgagttttttttttttttttttGACGATGTTCATTTACAGCGGTGT
TGCGACAGGCTCGCATCCGAACACCTCGGACCATTGGAAGGCCGCTCCACCTCCAGCACC
GCGCCCAAACCCACACCTCCAGCACCCACGCTTCCCAACCACGCGTACCTGGCATTCCCT
AAGCATCTCCATCCTTCACTCCACCCAGGGCCTCCGCGGCTTGCGACTGAGACCGCTTGG
CCCCCTACATCCGTTCACGCGCCCTACGGCATACGGGCGTGCCACCAAAAAGGCGTGCTC
AGCTGCTGCAGCCGCCCCGTACACGCGACCCACATCCGCGGCTCACACCAAGTCTCTCAA
GCTACACCCTAAATTAGACCCTTGACCACAGCCACCACCTATGCTGCGCACTGCCACGTG
GTGCCGTACACAGCACGGCTTTGCCATGCCTTCCAATTCCTCTGGCACGTTCCGCCCATA
TTCGGCCGTCCACACCGGGCTCTGCCCGCCGGAATCGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001032A_C01 KCC001032A_c01
         (519 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_572685.1| CG11122-PA [Drosophila melanogaster] gi|1072818...    42  0.005
gb|AAM50210.1| GH28840p [Drosophila melanogaster]                      42  0.005
ref|XP_301454.1| similar to gene_id:K19E20.3~unknown protein [Ho...    41  0.008
gb|AAL58841.1| PAK1 kinase [Cryptococcus neoformans var. grubii]       41  0.008
pir||S20790 extensin - almond gi|20420|emb|CAA46634.1| extensin ...    30  0.013

>ref|NP_572685.1| CG11122-PA [Drosophila melanogaster] gi|10728183|gb|AAF48000.2|
            CG11122-PA [Drosophila melanogaster]
          Length = 3536

 Score = 42.0 bits (97), Expect = 0.005
 Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
 Frame = +1

Query: 106  STSSTAPKPTPPAPTLPNHAY--LAFPKHLHPSLHPGPPRLATETAWPPTSVHAPYGIRA 279
            S SS+ P P  P+P+LP  A   L+ P    PS  P PP  A  TA  P    A      
Sbjct: 2562 SRSSSLPPPASPSPSLPPPASPSLSLPPPASPSPSPSPPPPAEATAPAPVPAAAQPAANV 2621

Query: 280  CHQKGVLSCCSRPVHAT 330
            CHQ  +      P   T
Sbjct: 2622 CHQPVIQQLFRNPPAVT 2638

>gb|AAM50210.1| GH28840p [Drosophila melanogaster]
          Length = 1272

 Score = 42.0 bits (97), Expect = 0.005
 Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
 Frame = +1

Query: 106 STSSTAPKPTPPAPTLPNHAY--LAFPKHLHPSLHPGPPRLATETAWPPTSVHAPYGIRA 279
           S SS+ P P  P+P+LP  A   L+ P    PS  P PP  A  TA  P    A      
Sbjct: 298 SRSSSLPPPASPSPSLPPPASPSLSLPPPASPSPSPSPPPPAEATAPAPVPAAAQPAANV 357

Query: 280 CHQKGVLSCCSRPVHAT 330
           CHQ  +      P   T
Sbjct: 358 CHQPVIQQLFRNPPAVT 374

>ref|XP_301454.1| similar to gene_id:K19E20.3~unknown protein [Homo sapiens]
          Length = 431

 Score = 41.2 bits (95), Expect = 0.008
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
 Frame = +1

Query: 118 TAPKPTPPAPTLPNHAYLAFP-----KHLH-----PSLHPGPPRLATETAWPPTSVHAPY 267
           + P P+PP+   P H +++ P     +H H     P   P PP L T   WPPT  H P+
Sbjct: 351 STPTPSPPSHRGPQHPHISPPFHRGSQHSHTLPTFPQGPPTPPHLPTFPQWPPTPPHPPH 410

Query: 268 GIRACHQKGVLSCCSRPV 321
                      + CS+PV
Sbjct: 411 ----------RNPCSKPV 418

 Score = 39.7 bits (91), Expect = 0.023
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 118 TAPKPTPPAPTLPNHAYLAFPKHLHPSLHPGPPRLATETAWPPTSVHAPY 267
           + P P+PP+   P H +++ P H  P     P  L T   WPPT +H P+
Sbjct: 298 STPTPSPPSHRGPQHPHISPPSHRGPQ---RPHILPTFPQWPPTPLHPPH 344

 Score = 31.2 bits (69), Expect = 8.3
 Identities = 18/59 (30%), Positives = 26/59 (43%), Gaps = 10/59 (16%)
 Frame = +1

Query: 121 APKPTPPAPTLPNHAYLAFPK-------HLHPSLHPGPPR---LATETAWPPTSVHAPY 267
           AP  +PP+   P H +++ P        H+ P  H GP     L T    PP  +H P+
Sbjct: 233 APTSSPPSHRGPQHPHISPPSHRGPQHPHISPPSHRGPQHPHILPTFLQGPPIPLHPPH 291

>gb|AAL58841.1| PAK1 kinase [Cryptococcus neoformans var. grubii]
          Length = 632

 Score = 41.2 bits (95), Expect = 0.008
 Identities = 29/74 (39%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
 Frame = +1

Query: 64  DRLASEHLGPLEGRSTSSTAPKPT---PPAPTLPNHAYLAFPKH--LHPSLHPG--PPRL 222
           +R+ SE   P   R    T P P    PPAP     AY   P H   H S HPG  PP  
Sbjct: 211 NRMLSERHAPASHRPAELTTPAPLAGPPPAPRTTTQAYSPAPTHSPQHLSSHPGALPP-- 268

Query: 223 ATETAWPPTSVHAP 264
                 PP S HAP
Sbjct: 269 ------PPPSAHAP 276

>pir||S20790 extensin - almond gi|20420|emb|CAA46634.1| extensin [Prunus dulcis]
           gi|445616|prf||1909363A extensin
          Length = 278

 Score = 30.0 bits (66), Expect(2) = 0.013
 Identities = 12/29 (41%), Positives = 16/29 (54%)
 Frame = +2

Query: 71  SHPNTSDHWKAAPPPAPRPNPHLQHPRFP 157
           S P    H+K+ PPP+P P  H  H + P
Sbjct: 149 SPPKHPYHYKSPPPPSPSPPKHPYHYKSP 177

 Score = 30.0 bits (66), Expect(2) = 0.28
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 92  HWKAAPPPAPRPNPHLQHPRFP 157
           H+K+ PPP+P P  H   P+ P
Sbjct: 47  HYKSPPPPSPTPPVHYSPPKHP 68

 Score = 29.6 bits (65), Expect(2) = 0.013
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +1

Query: 130 PTPPAPTLPNHAYLAFPKHLHPSLHPGPPR--LATETAWPPTSVHAP 264
           P PP+PT P ++    P H      P PP+     ++  PPT V+ P
Sbjct: 193 PPPPSPTPPVYSPPKHPYHYKSPPPPSPPKKPYHYKSPPPPTPVYKP 239

 Score = 25.0 bits (53), Expect(2) = 0.28
 Identities = 14/45 (31%), Positives = 18/45 (39%)
 Frame = +1

Query: 130 PTPPAPTLPNHAYLAFPKHLHPSLHPGPPRLATETAWPPTSVHAP 264
           P PP+P+ P H Y        P   P PP+       PP    +P
Sbjct: 109 PPPPSPSPPKHPY---HYKSPPPPSPSPPKHPYHYKSPPPPSPSP 150



EST assemble image


clone accession position
1 LC073f10_r AV624154 1 472
2 CM011e03_r AV386894 31 520
3 HC091f11_r AV638855 37 487
4 LC098b01_r AV625806 42 391




Chlamydomonas reinhardtii
Kazusa DNA Research Institute