KCC001030A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001030A_C01 KCC001030A_c01
ccccccccttttttcattttTTTTTTTTTTTTTTATTCTCAAGAATTCGGGTATTTACAA
ACATGCGCTGCTTGACAGCATATCCAGTCCGTGACAGCGCAAAAACACCTCTCTGCCTCG
GTCAATGAAGCATCCGTGCACGGCCTCGCGCCCCCTGACCGCTGGCAACTCCGCTTCCTG
CCACACGGCCCGCTCGGCACAAACGACTCCATCCACTCCAATCATACGAAACCATCAGGT
CCGAGGGACGAACGCATCCACACAGCCACATCGCCCTCCCGCCCTAAAACTGCGCTGAGG
CAAGGAGCCCGCCCCCCGGGATGCACGCGGCTGCAGCGCACTGCGCAACCCGGCGCCCAG
GGGCGTGCCGCCATTCGGCGCTAGGGAGGGCGGAGCCGTGGGCAGTCCTCCAGCCCTTCA
AGCCAACATCATACACTGTCAAAACAGACCGGGAGTGCGGCCCGCGGGGGAAGCGGAACC
GGCACCGTCTCTCGGTGTTCTCTTCGTCTTCTCAAAATGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001030A_C01 KCC001030A_c01
         (521 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAP50553.1| rh26 [Rhesus cytomegalovirus strain 68-1]               40  0.014
dbj|BAA90502.1| maize EST AI621709, similar to an Arabidopsis th...    39  0.031
ref|XP_322152.1| hypothetical protein [Neurospora crassa] gi|289...    39  0.031
ref|NP_003886.1| synaptojanin 1; inositol 5'-phosphatase (synapt...    39  0.041
gb|AAC51921.1| synaptojanin [Homo sapiens]                             39  0.041

>gb|AAP50553.1| rh26 [Rhesus cytomegalovirus strain 68-1]
          Length = 282

 Score = 40.4 bits (93), Expect = 0.014
 Identities = 33/133 (24%), Positives = 56/133 (41%), Gaps = 2/133 (1%)
 Frame = +2

Query: 44  NSGIYKHALLDSISSP*QRKNTSLPRSMKHPCTASRPLTAGNSASCHTARSAQTTPSTPI 223
           +SGIY H++  S ++   R +T    ++    T ++  T   + +  T  S   T STP+
Sbjct: 111 HSGIYCHSVFTSTNNGINRVDTCFNLTVVPKITTTKKATTTKTTTTTTLASKLKTRSTPV 170

Query: 224 IRNHQVRGTNASTQPHRPPALKLR*GKEPAPRDARGCSALRNPAPRGVPPFGAREGGAV- 400
           I+N  + GT   +  H  P+L     K+P+ +D            +  PP     G  V 
Sbjct: 171 IKNPHIDGTPPPS--HEKPSL-----KKPSLKDTLQAHTTLTTLLQSYPPLTTTPGYEVV 223

Query: 401 -GSPPALQANIIH 436
             +P     N+ H
Sbjct: 224 QHTPEKQVQNVTH 236

>dbj|BAA90502.1| maize EST AI621709, similar to an Arabidopsis thialiana chromosome
           BAC genomic sequence (AC006193); unknown protein [Oryza
           sativa]
          Length = 895

 Score = 39.3 bits (90), Expect = 0.031
 Identities = 40/120 (33%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
 Frame = +2

Query: 80  ISSP*QRKNTSLPRSMKHPCTAS---RPLTAGNSASCHTARSAQTTPSTPIIRNHQVRGT 250
           ++SP  R   S P S   P T S   RP T G      T RS   TPSTP  RN+ V G 
Sbjct: 20  MASPISRGRPSTPSSNHRPSTPSSIHRPSTPGA-----TRRSIGGTPSTPRSRNNGVGGG 74

Query: 251 NA---STQPHRPPALKLR*GKEPAPRDARGCSALRNPAPRGVPPFGAREGGAVGSPPALQ 421
                 ++P+ PP+   R      PR     S  R+P      P   R    +G+PP  Q
Sbjct: 75  GGGPFKSEPNSPPSATAR------PR----LSFDRSPRSVDSKPVVERRVPKIGTPPDKQ 124

>ref|XP_322152.1| hypothetical protein [Neurospora crassa] gi|28917438|gb|EAA27140.1|
            hypothetical protein [Neurospora crassa]
          Length = 1010

 Score = 39.3 bits (90), Expect = 0.031
 Identities = 37/128 (28%), Positives = 49/128 (37%), Gaps = 23/128 (17%)
 Frame = +2

Query: 101  KNTSLPRSMKHPCTASRPLTAGNSASCHTARSAQTTPSTPIIRNHQVRGT---------- 250
            ++ S  RS      A+ P+  G S +   +RS   +PS P  R +  RG           
Sbjct: 815  RSPSRSRSRTRSPAAAPPIRRGRSGTRSRSRSYSRSPSPPPARGYPTRGRAPVSNNDRAA 874

Query: 251  ------------NASTQPHRPPALKLR*GKEPAPRDARGCSALRNPAP-RGVPPFGAREG 391
                        +AS  PH PP  +LR G     R        R+P P RG  P G R+ 
Sbjct: 875  AASGKRRREGSYSASRSPHPPPQQRLRRGSYSRSRS-------RSPIPIRGNGPAG-RDT 926

Query: 392  GAVGSPPA 415
            G  G  PA
Sbjct: 927  GRAGPAPA 934

>ref|NP_003886.1| synaptojanin 1; inositol 5'-phosphatase (synaptojanin 1);
            synaptojanin-1, polyphosphoinositide phosphatase [Homo
            sapiens] gi|8134730|sp|O43426|SYJ1_HUMAN Synaptojanin 1
            (Synaptic inositol-1,4,5-trisphosphate 5-phosphatase 1)
            gi|2702323|gb|AAC51922.1| synaptojanin [Homo sapiens]
          Length = 1575

 Score = 38.9 bits (89), Expect = 0.041
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 14/118 (11%)
 Frame = +2

Query: 188  ARSAQTTPSTPIIRNHQVRGTNASTQPHRPPALKLR*GKEPAPRDARGCSALRNPAP--R 361
            +R+   TP  P  ++  +    A+  P + PA  L   + P PR     +    PAP  R
Sbjct: 1069 SRAPSRTPGPPSAQSSPIDAQPATPLPQKDPAQPLEPKRPPPPRPV---APPTRPAPPQR 1125

Query: 362  GVPPFGAR-------EGGAVGSPPA--LQANIIHCQNRPGVR---PAGEAEPAPSLGV 499
              PP GAR       E G +G+PP+  +    +     PG       G ++P+P  G+
Sbjct: 1126 PPPPSGARSPAPTRKEFGGIGAPPSPGVARREMEAPKSPGTTRKDNIGRSQPSPQAGL 1183

>gb|AAC51921.1| synaptojanin [Homo sapiens]
          Length = 1311

 Score = 38.9 bits (89), Expect = 0.041
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 14/118 (11%)
 Frame = +2

Query: 188  ARSAQTTPSTPIIRNHQVRGTNASTQPHRPPALKLR*GKEPAPRDARGCSALRNPAP--R 361
            +R+   TP  P  ++  +    A+  P + PA  L   + P PR     +    PAP  R
Sbjct: 1069 SRAPSRTPGPPSAQSSPIDAQPATPLPQKDPAQPLEPKRPPPPRPV---APPTRPAPPQR 1125

Query: 362  GVPPFGAR-------EGGAVGSPPA--LQANIIHCQNRPGVR---PAGEAEPAPSLGV 499
              PP GAR       E G +G+PP+  +    +     PG       G ++P+P  G+
Sbjct: 1126 PPPPSGARSPAPTRKEFGGIGAPPSPGVARREMEAPKSPGTTRKDNIGRSQPSPQAGL 1183



EST assemble image


clone accession position
1 HC049h09_r AV635713 1 160
2 CM011c06_r AV386930 15 452
3 MX260h08_r BP092926 40 543
4 LC051a12_r AV622547 40 521




Chlamydomonas reinhardtii
Kazusa DNA Research Institute