KCC001026A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC001026A_C01 KCC001026A_c01
GCTTGTCGGTGTTCCCTGCCCTTCCCTGCCCTTCCAACGCAACTTGACCAGCTGCAAACA
TGCAAGTGTGCAACGGTTCCCGCATGGCTAGGCAAAACCTTTCGCAGCGTCGATCTGTGA
CAAGGCTTCAACGTTCTCTGCATGTGACATGTCAGGCGTCACAACAGCGGAGCAGCGATG
CCTGTGTGGTGCAGAGCGCGAAGCTGCTGGCCGTCGCCGGAATGGCCGCGAGCATTCTGC
TTGGGGCGCCGCTGGATGCTATGGCCGCCAAGAGCAGGCTGCCGCCCATTGACGTGAACG
ACCCCAACCGCTGCACGGTGGCTGCTCTGGACAAGTTCGCTGACACGCGCGCCGCCTTCA
GCCAGGAGTCCAGCGGCGGCAATATGGTGGAGGCTATTGTTGATGTCCGCAACTGCGACT
TCTCCGGCCAGAACCTGAGCGGCAAGGTCATGAGCGGGGTCATCCTGGAGGGCGCAGACT
TTACGGGGGCCAAGTTCGTGGGCAGCCAGTTCGCCCGCGCCAACGCTCGCTCCGCCAAGA
TGGCGGGTGCCGACTTCACGGACACCAACCTCTACTCCACACAGTTCGAGGGAGCTGATC
TGCAGGGCGCCAACTTTGAGAACTCCATCCTCACCGGCAGCACCTTTGGCAAGAACGAGG
ACGGCGTGTGGGCCAACCTGAAGGGCGCTCATTTCGAGGGCGCGCTGGTGTCTTCTTCCG
ACATCGGCCGCATCTGCGAAAACCCC
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001026A_C01 KCC001026A_c01
(746 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM93693.1| hypothetical protein [Oryza sativa (japonica cult... 87 4e-16
ref|NP_851183.1| thylakoid lumenal 17.4 kD pentapeptide repeat f... 84 2e-15
sp|P81760|TL17_ARATH Thylakoid lumenal 17.4 kDa protein, chlorop... 84 3e-15
ref|NP_200161.2| thylakoid lumenal 17.4 kD pentapeptide repeat f... 81 2e-14
ref|ZP_00044302.1| COG1357: Uncharacterized low-complexity prote... 68 1e-10
>gb|AAM93693.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|31432906|gb|AAP54482.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 236
Score = 86.7 bits (213), Expect = 4e-16
Identities = 59/207 (28%), Positives = 96/207 (45%), Gaps = 7/207 (3%)
Frame = +3
Query: 144 VTCQASQQRSSDACVVQSAKLLAVAGMAASILLG-----APLDAMAAKSRLPPIDVNDPN 308
V C A +A + + + AV G+A +L + +AA RLPP+ +PN
Sbjct: 32 VACSAGGGGGPEAAGLFAGERKAVGGLACGVLAAWAVASSSSPVIAASQRLPPLST-EPN 90
Query: 309 RCTVAALDKFADTRAAFSQESSGGNMVEAIVDVRNCDFSGQ--NLSGKVMSGVILEGADF 482
RC A + + + +D+R CD++ + NL GK ++ ++ + F
Sbjct: 91 RCERAFVGNTI---------GQANGVYDKPLDLRFCDYTNEKTNLKGKSLAAALMSDSKF 141
Query: 483 TGAKFVGSQFARANARSAKMAGADFTDTNLYSTQFEGADLQGANFENSILTGSTFGKNED 662
GA ++A A A G DFT+ + FE ADLQGA F N++L+GSTF
Sbjct: 142 DGADMSEVVMSKAYAVGASFKGTDFTNAVIDRVNFEKADLQGAIFRNTVLSGSTFDD--- 198
Query: 663 GVWANLKGAHFEGALVSSSDIGRICEN 743
A ++ FE ++ D+ ++C N
Sbjct: 199 ---AKMQDVVFEDTIIGYIDLQKLCTN 222
>ref|NP_851183.1| thylakoid lumenal 17.4 kD pentapeptide repeat family protein,
chloroplast precursor [Arabidopsis thaliana]
gi|9759188|dbj|BAB09725.1| thylakoid lumenal 17.4 kD
protein, chloroplast precursor (P17.4) [Arabidopsis
thaliana] gi|13899115|gb|AAK48979.1|AF370552_1 thylakoid
lumenal 17.4 kD protein, chloroplast precursor (P17.4)
[Arabidopsis thaliana] gi|28059599|gb|AAO30073.1|
thylakoid lumenal 17.4 kD protein, chloroplast precursor
(P17.4) [Arabidopsis thaliana]
Length = 236
Score = 84.0 bits (206), Expect = 2e-15
Identities = 63/220 (28%), Positives = 105/220 (47%), Gaps = 10/220 (4%)
Frame = +3
Query: 114 SVTRLQRSL-HVTCQASQQRSSDACVVQS-------AKLLAVAGMAASILLGAPLDAMAA 269
++ R RSL V C A + R + V +S + A A ++ + +P+ +AA
Sbjct: 21 NLRREPRSLVTVHCSAGENRENGEGVKKSLFPLKELGSIACAALCACTLTIASPV--IAA 78
Query: 270 KSRLPPIDVNDPNRCTVAALDKFADTRAAFSQESSGGNMVEAIVDVRNCDFSGQ--NLSG 443
RLPP+ +P+RC A + + + +D+R CD++ NL G
Sbjct: 79 NQRLPPLST-EPDRCEKAFVGNTI---------GQANGVYDKPLDLRFCDYTNDQTNLKG 128
Query: 444 KVMSGVILEGADFTGAKFVGSQFARANARSAKMAGADFTDTNLYSTQFEGADLQGANFEN 623
K +S ++ GA F GA ++A A A G +FT+ + F ++L+GA F N
Sbjct: 129 KTLSAALMVGAKFDGADMTEVVMSKAYAVEASFKGVNFTNAVIDRVNFGKSNLKGAVFRN 188
Query: 624 SILTGSTFGKNEDGVWANLKGAHFEGALVSSSDIGRICEN 743
++L+GSTF + ANL+ FE ++ D+ +IC N
Sbjct: 189 TVLSGSTFEE------ANLEDVVFEDTIIGYIDLQKICRN 222
>sp|P81760|TL17_ARATH Thylakoid lumenal 17.4 kDa protein, chloroplast precursor (P17.4)
Length = 236
Score = 83.6 bits (205), Expect = 3e-15
Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 9/209 (4%)
Frame = +3
Query: 144 VTCQASQQRSSDACVVQS-------AKLLAVAGMAASILLGAPLDAMAAKSRLPPIDVND 302
V C A + R + V +S + A A ++ + +P+ +AA RLPP+ +
Sbjct: 32 VHCSAGENRENGEGVKKSLFPLKELGSIACAALCACTLTIASPV--IAANQRLPPLST-E 88
Query: 303 PNRCTVAALDKFADTRAAFSQESSGGNMVEAIVDVRNCDFSGQ--NLSGKVMSGVILEGA 476
P+RC A + + + +D+R CD++ NL GK +S ++ GA
Sbjct: 89 PDRCEKAFVGNTI---------GQANGVYDKPLDLRFCDYTNDQTNLKGKTLSAALMVGA 139
Query: 477 DFTGAKFVGSQFARANARSAKMAGADFTDTNLYSTQFEGADLQGANFENSILTGSTFGKN 656
F GA ++A A A G +FT+ + F ++L+GA F N++L+GSTF +
Sbjct: 140 KFDGADMTEVVMSKAYAVEASFKGVNFTNAVIDRVNFGKSNLKGAVFRNTVLSGSTFEE- 198
Query: 657 EDGVWANLKGAHFEGALVSSSDIGRICEN 743
ANL+ FE ++ D+ +IC N
Sbjct: 199 -----ANLEDVVFEDTIIGYIDLQKICRN 222
>ref|NP_200161.2| thylakoid lumenal 17.4 kD pentapeptide repeat family protein,
chloroplast precursor [Arabidopsis thaliana]
Length = 235
Score = 80.9 bits (198), Expect = 2e-14
Identities = 52/175 (29%), Positives = 88/175 (49%), Gaps = 2/175 (1%)
Frame = +3
Query: 225 AASILLGAPLDAMAAKSRLPPIDVNDPNRCTVAALDKFADTRAAFSQESSGGNMVEAIVD 404
A ++ + +P+ +AA RLPP+ +P+RC A + + + +D
Sbjct: 65 ACTLTIASPV--IAANQRLPPLST-EPDRCEKAFVGNTI---------GQANGVYDKPLD 112
Query: 405 VRNCDFSGQ--NLSGKVMSGVILEGADFTGAKFVGSQFARANARSAKMAGADFTDTNLYS 578
+R CD++ NL GK +S ++ GA F GA ++A A A G +FT+ +
Sbjct: 113 LRFCDYTNDQTNLKGKTLSAALMVGAKFDGADMTEVVMSKAYAVEASFKGVNFTNAVIDR 172
Query: 579 TQFEGADLQGANFENSILTGSTFGKNEDGVWANLKGAHFEGALVSSSDIGRICEN 743
F ++L+GA F N++L+GSTF + ANL+ FE ++ D+ +IC N
Sbjct: 173 VNFGKSNLKGAVFRNTVLSGSTFEE------ANLEDVVFEDTIIGYIDLQKICRN 221
>ref|ZP_00044302.1| COG1357: Uncharacterized low-complexity proteins [Magnetococcus sp.
MC-1]
Length = 1428
Score = 68.2 bits (165), Expect = 1e-10
Identities = 40/99 (40%), Positives = 52/99 (52%)
Frame = +3
Query: 411 NCDFSGQNLSGKVMSGVILEGADFTGAKFVGSQFARANARSAKMAGADFTDTNLYSTQFE 590
N D+S +LSG SGV LEGADF+G G F+ AN R G DF+ NL F
Sbjct: 1076 NIDWSALDLSGVNFSGVNLEGADFSGLDLSGVNFSGANLR-----GVDFSGANLRGVNFS 1130
Query: 591 GADLQGANFENSILTGSTFGKNEDGVWANLKGAHFEGAL 707
GADL+GA + ++ G T+ E G + N G +L
Sbjct: 1131 GADLRGATLDMALAIGVTWSNIEFGSFINAAGLRLSTSL 1169
Score = 56.6 bits (135), Expect = 4e-07
Identities = 37/104 (35%), Positives = 51/104 (48%), Gaps = 3/104 (2%)
Frame = +3
Query: 405 VRNCDFSGQNLSGKVMSGVILEGADFTGAKFVGSQFAR---ANARSAKMAGADFTDTNLY 575
+RN DFSG +L G SG L G DF+GA G+ F+ N+ AK+ G + L
Sbjct: 279 LRNFDFSGADLRGADFSGADLSGVDFSGANLAGAIFSTTSGGNSSRAKLGGVNLQGAILD 338
Query: 576 STQFEGADLQGANFENSILTGSTFGKNEDGVWANLKGAHFEGAL 707
G DL+GA+ N+ L+G D +A + GA F L
Sbjct: 339 GVSLSGLDLRGADLSNTDLSG------VDLSYALVVGARFANIL 376
Score = 56.6 bits (135), Expect = 4e-07
Identities = 39/125 (31%), Positives = 55/125 (43%), Gaps = 16/125 (12%)
Frame = +3
Query: 378 GNMVEAIVDVRN----------CDFSGQNLSGKVMSGVILEGADFTG------AKFVGSQ 509
G + D+RN +FSG +LSG G +L+GA F A F G+
Sbjct: 1014 GTDFSGVADLRNFIFRGAQLDGANFSGLDLSGVNFLGAMLDGARFDAGSLLRLADFKGAS 1073
Query: 510 FARANARSAKMAGADFTDTNLYSTQFEGADLQGANFENSILTGSTFGKNEDGVWANLKGA 689
+ + ++G +F+ NL F G DL G NF + L G F ANL+G
Sbjct: 1074 LLNIDWSALDLSGVNFSGVNLEGADFSGLDLSGVNFSGANLRGVDFS------GANLRGV 1127
Query: 690 HFEGA 704
+F GA
Sbjct: 1128 NFSGA 1132
Score = 45.8 bits (107), Expect = 7e-04
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 27/129 (20%)
Frame = +3
Query: 402 DVRNCDFSGQNLSGKVMSGVILEGA-----------DFTGAKFVGSQ------------- 509
D+ DFSG++LS ++ GV LEGA DF+GA G +
Sbjct: 516 DLSGIDFSGKDLSAALLRGVNLEGAILSTAILSQASDFSGADLSGLKALDASYSVLPTAV 575
Query: 510 ---FARANARSAKMAGADFTDTNLYSTQFEGADLQGANFENSILTGSTFGKNEDGVWANL 680
FA+ N ++G F NL ++ A+F+ + L G+ GV
Sbjct: 576 TGIFAQTNLAGLDLSGLSFLGVNLAGANLADVNVDEASFDQANLKGAIL----SGVSNIA 631
Query: 681 KGAHFEGAL 707
GA F+GAL
Sbjct: 632 SGAAFQGAL 640
Score = 43.9 bits (102), Expect = 0.003
Identities = 22/60 (36%), Positives = 32/60 (52%)
Frame = +3
Query: 417 DFSGQNLSGKVMSGVILEGADFTGAKFVGSQFARANARSAKMAGADFTDTNLYSTQFEGA 596
D SG +L+G +SG+ L G + TGA G+ SA +AGADF+ + F G+
Sbjct: 412 DLSGYDLAGFDLSGLDLSGVNLTGANLTGANLRDVLLSSANLAGADFSGAFAWGVDFTGS 471
Score = 43.1 bits (100), Expect = 0.005
Identities = 31/91 (34%), Positives = 45/91 (49%)
Frame = +3
Query: 453 SGVILEGADFTGAKFVGSQFARANARSAKMAGADFTDTNLYSTQFEGADLQGANFENSIL 632
+G +L DFTG F+ A+ R GADF+ +L F GA+L GA F S
Sbjct: 265 AGAMLAHTDFTGQSLRNFDFSGADLR-----GADFSGADLSGVDFSGANLAGAIF--STT 317
Query: 633 TGSTFGKNEDGVWANLKGAHFEGALVSSSDI 725
+G + + G NL+GA +G +S D+
Sbjct: 318 SGGNSSRAKLG-GVNLQGAILDGVSLSGLDL 347
Score = 39.3 bits (90), Expect = 0.066
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 24/129 (18%)
Frame = +3
Query: 372 SGGNMVEAIVDVRNCDFSGQNLSGKVMSGVILEGADFTG----------------AKFVG 503
+G N+ A ++R+ S NL+G SG G DFTG A +
Sbjct: 434 TGANLTGA--NLRDVLLSSANLAGADFSGAFAWGVDFTGSSGGDSATVSNMLVEKAANIS 491
Query: 504 SQFA---RANARSAKMAGADFTDTNLYSTQFEGAD-----LQGANFENSILTGSTFGKNE 659
+ FA + A S G DF+ +L F G D L+G N E +IL+ + +
Sbjct: 492 AGFASDLKDFATSNNFKGFDFSGWDLSGIDFSGKDLSAALLRGVNLEGAILSTAILSQAS 551
Query: 660 DGVWANLKG 686
D A+L G
Sbjct: 552 DFSGADLSG 560
Score = 37.7 bits (86), Expect = 0.19
Identities = 36/134 (26%), Positives = 51/134 (37%), Gaps = 26/134 (19%)
Frame = +3
Query: 399 VDVRNCDFSGQNLSGKVMSGVILEGADFTG-----------------------AKFVGSQ 509
+D+R D S +LSG +S ++ GA F A+ VGS
Sbjct: 345 LDLRGADLSNTDLSGVDLSYALVVGARFANILSDAQTDISGMLYDAGHADLFTAEAVGSA 404
Query: 510 F---ARANARSAKMAGADFTDTNLYSTQFEGADLQGANFENSILTGSTFGKNEDGVWANL 680
A + +AG D + +L GA+L GAN + +L+ ANL
Sbjct: 405 LHLAAGVDLSGYDLAGFDLSGLDLSGVNLTGANLTGANLRDVLLSS-----------ANL 453
Query: 681 KGAHFEGALVSSSD 722
GA F GA D
Sbjct: 454 AGADFSGAFAWGVD 467
Score = 37.7 bits (86), Expect = 0.19
Identities = 23/66 (34%), Positives = 28/66 (41%)
Frame = +3
Query: 453 SGVILEGADFTGAKFVGSQFARANARSAKMAGADFTDTNLYSTQFEGADLQGANFENSIL 632
+GV L G D G G + N A + GA+ D L S GAD GA
Sbjct: 409 AGVDLSGYDLAGFDLSGLDLSGVNLTGANLTGANLRDVLLSSANLAGADFSGAFAWGVDF 468
Query: 633 TGSTFG 650
TGS+ G
Sbjct: 469 TGSSGG 474
EST assemble image
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clone |
accession |
position |
| 1 |
HC073b07_r |
AV637438 |
1 |
536 |
| 2 |
MX224h08_r |
BP090504 |
27 |
438 |
| 3 |
CM062b11_r |
AV390124 |
95 |
684 |
| 4 |
CM041e02_r |
AV389438 |
122 |
624 |
| 5 |
CM010f06_r |
AV386973 |
448 |
848 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute